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Folder iconJ2 RIPSeq

Cristina Militti
Feb. 10, 2022

No Sample

MultiQC
multiqc_data
Directory
multiqc_report.html
1.19 MB
Samtools idxstats
idxstat_report.txt
5.85 kB
FASTQ file (paired-end)
MIL4655A126_S21_L001_R1_001.fastq.gz
4.40 GB
MIL4655A126_S21_L001_R2_001.fastq.gz
4.41 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A126_S21_L001_R1_001_fastqc.zip
820.27 kB
MIL4655A126_S21_L001_R2_001_fastqc.zip
834.67 kB
FASTQ file (paired-end)
MIL4655A125_S20_L001_R1_001.fastq.gz
3.30 GB
MIL4655A125_S20_L001_R2_001.fastq.gz
3.35 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A125_S20_L001_R1_001_fastqc.zip
823.34 kB
MIL4655A125_S20_L001_R2_001_fastqc.zip
841.10 kB
FASTQ file (paired-end)
MIL4655A124_S53_L001_R1_001.fastq.gz
22.59 MB
MIL4655A124_S53_L001_R2_001.fastq.gz
22.58 MB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A124_S53_L001_R1_001_fastqc.zip
857.94 kB
MIL4655A124_S53_L001_R2_001_fastqc.zip
878.40 kB
FASTQ file (paired-end)
MIL4655A122_S37_L001_R1_001.fastq.gz
1.52 GB
MIL4655A122_S37_L001_R2_001.fastq.gz
1.54 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A122_S37_L001_R1_001_fastqc.zip
819.08 kB
MIL4655A122_S37_L001_R2_001_fastqc.zip
841.45 kB
FASTQ file (paired-end)
MIL4655A121_S52_L001_R1_001.fastq.gz
79.47 MB
MIL4655A121_S52_L001_R2_001.fastq.gz
79.17 MB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A121_S52_L001_R1_001_fastqc.zip
859.35 kB
MIL4655A121_S52_L001_R2_001_fastqc.zip
879.71 kB
FASTQ file (paired-end)
MIL4655A123_S38_L001_R1_001.fastq.gz
1.50 GB
MIL4655A123_S38_L001_R2_001.fastq.gz
1.52 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A123_S38_L001_R1_001_fastqc.zip
821.29 kB
MIL4655A123_S38_L001_R2_001_fastqc.zip
843.73 kB
FASTQ file (paired-end)
MIL4655A120_S31_L001_R1_001.fastq.gz
2.49 GB
MIL4655A120_S31_L001_R2_001.fastq.gz
2.61 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A120_S31_L001_R1_001_fastqc.zip
804.00 kB
MIL4655A120_S31_L001_R2_001_fastqc.zip
829.30 kB
FASTQ file (paired-end)
MIL4655A119_S30_L001_R1_001.fastq.gz
2.40 GB
MIL4655A119_S30_L001_R2_001.fastq.gz
2.45 GB
fastqc
Directory
stderr.txt
2.49 kB
MIL4655A119_S30_L001_R1_001_fastqc.zip
808.77 kB
MIL4655A119_S30_L001_R2_001_fastqc.zip
828.14 kB
Samtools idxstats
idxstat_report.txt
5.95 kB
Samtools idxstats
idxstat_report.txt
5.96 kB
Cutadapt (Corall RNA-Seq, paired-end)
cutadapt_report.txt
1.39 kB
MIL4655A124_S53_L001_R1_001_trimmed.fastq.gz
12.87 MB
MIL4655A124_S53_L001_R2_001_trimmed.fastq.gz
14.56 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
5.78 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.19 MB
Cutadapt (Corall RNA-Seq, paired-end)
cutadapt_report.txt
1.41 kB
MIL4655A121_S52_L001_R1_001_trimmed.fastq.gz
49.80 MB
MIL4655A121_S52_L001_R2_001_trimmed.fastq.gz
56.35 MB
fastqc
Directory
STAR
MIL4655A121_S52_L001_R1_001_trimmed_unmapped.out.mate1.fastq.gz
8.32 MB
MIL4655A121_S52_L001_R2_001_trimmed_unmapped.out.mate2.fastq.gz
9.53 MB
MIL4655A121_S52_L001_R1_001_trimmed.bam.bai
2.58 MB
MIL4655A121_S52_L001_R1_001_trimmed.bam
500.13 MB
MIL4655A121_S52_L001_R1_001_trimmed_stats.txt
1.81 kB
MIL4655A121_S52_L001_R1_001_trimmed_SJ.out.tab
1.57 MB
Subsample FASTQ (paired-end)
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.fastq.gz
37.10 MB
MIL4655A121_S52_L001_R2_001_trimmed_downsampled.fastq.gz
41.84 MB
fastqc
Directory
STAR
MIL4655A124_S53_L001_R1_001_trimmed_unmapped.out.mate1.fastq.gz
1.94 MB
MIL4655A124_S53_L001_R2_001_trimmed_unmapped.out.mate2.fastq.gz
2.23 MB
MIL4655A124_S53_L001_R1_001_trimmed.bam.bai
1.81 MB
MIL4655A124_S53_L001_R1_001_trimmed.bam
137.15 MB
MIL4655A124_S53_L001_R1_001_trimmed_stats.txt
1.80 kB
MIL4655A124_S53_L001_R1_001_trimmed_SJ.out.tab
568.12 kB
Subsample FASTQ (paired-end)
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.fastq.gz
12.84 MB
MIL4655A124_S53_L001_R2_001_trimmed_downsampled.fastq.gz
14.54 MB
fastqc
Directory
UMI-tools dedup
MIL4655A121_S52_L001_R1_001_trimmed_dedup.bam
458.72 MB
MIL4655A121_S52_L001_R1_001_trimmed_dedup.log
8.17 kB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_stats.zip
2.08 MB
MIL4655A121_S52_L001_R1_001_trimmed_dedup.bam.bai
2.57 MB
MIL4655A121_S52_L001_R1_001_trimmed_stats.txt
432 B
MIL4655A121_S52_L001_R1_001_trimmed_dedup.bw
3.97 MB
STAR
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
22.57 MB
MIL4655A121_S52_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
25.30 MB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.bam.bai
336 B
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.bam
35.99 MB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_SJ.out.tab
18.12 kB
STAR
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
36.56 MB
MIL4655A121_S52_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
41.29 MB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.bam.bai
1.13 kB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.bam
648.83 kB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_SJ.out.tab
7.83 kB
UMI-tools dedup
MIL4655A124_S53_L001_R1_001_trimmed_dedup.bam
108.02 MB
MIL4655A124_S53_L001_R1_001_trimmed_dedup.log
5.58 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_stats.zip
757.86 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup.bam.bai
1.80 MB
MIL4655A124_S53_L001_R1_001_trimmed_stats.txt
425 B
MIL4655A124_S53_L001_R1_001_trimmed_dedup.bw
765.28 kB
featureCounts
featureCounts_rc.txt.summary
358 B
MIL4655A121_S52_L001_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
4.71 MB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_rc.tab.gz
221.21 kB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_tpm.tab.gz
346.87 kB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_cpm.tab.gz
244.85 kB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_expressions.txt.gz
650.82 kB
STAR
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
6.55 MB
MIL4655A124_S53_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
7.37 MB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.bam.bai
336 B
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.bam
14.93 MB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_SJ.out.tab
5.93 kB
STAR
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
12.70 MB
MIL4655A124_S53_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
14.39 MB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.bam.bai
256 B
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.bam
37.05 kB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_SJ.out.tab
895 B
featureCounts
featureCounts_rc.txt.summary
355 B
MIL4655A124_S53_L001_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
4.70 MB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_rc.tab.gz
213.01 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_tpm.tab.gz
300.95 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_cpm.tab.gz
227.84 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_expressions.txt.gz
578.06 kB
Cutadapt (Corall RNA-Seq, paired-end)
cutadapt_report.txt
1.48 kB
MIL4655A123_S38_L001_R1_001_trimmed.fastq.gz
1.00 GB
MIL4655A123_S38_L001_R2_001_trimmed.fastq.gz
1.15 GB
fastqc
Directory
Subsample FASTQ (paired-end)
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.fastq.gz
37.40 MB
MIL4655A123_S38_L001_R2_001_trimmed_downsampled.fastq.gz
42.15 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, paired-end)
cutadapt_report.txt
1.46 kB
MIL4655A122_S37_L001_R1_001_trimmed.fastq.gz
1.02 GB
MIL4655A122_S37_L001_R2_001_trimmed.fastq.gz
1.18 GB
fastqc
Directory
STAR
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.94 MB
MIL4655A123_S38_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
20.06 MB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.bam.bai
336 B
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.bam
49.66 MB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_stats.txt
1.80 kB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_SJ.out.tab
23.64 kB
STAR
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
37.09 MB
MIL4655A123_S38_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
41.84 MB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.bam.bai
432 B
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.bam
186.64 kB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_SJ.out.tab
3.42 kB
Subsample FASTQ (paired-end)
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.fastq.gz
37.91 MB
MIL4655A122_S37_L001_R2_001_trimmed_downsampled.fastq.gz
42.98 MB
fastqc
Directory
STAR
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
18.73 MB
MIL4655A122_S37_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
21.06 MB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.bam.bai
336 B
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.bam
48.78 MB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_stats.txt
1.80 kB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_SJ.out.tab
26.12 kB
STAR
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
37.58 MB
MIL4655A122_S37_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
42.67 MB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.bam.bai
424 B
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.bam
196.38 kB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_SJ.out.tab
3.75 kB
STAR
MIL4655A123_S38_L001_R1_001_trimmed_unmapped.out.mate1.fastq.gz
89.88 MB
MIL4655A123_S38_L001_R2_001_trimmed_unmapped.out.mate2.fastq.gz
104.94 MB
MIL4655A123_S38_L001_R1_001_trimmed.bam.bai
4.33 MB
MIL4655A123_S38_L001_R1_001_trimmed.bam
13.17 GB
MIL4655A123_S38_L001_R1_001_trimmed_stats.txt
1.82 kB
MIL4655A123_S38_L001_R1_001_trimmed_SJ.out.tab
6.66 MB
STAR
MIL4655A122_S37_L001_R1_001_trimmed_unmapped.out.mate1.fastq.gz
90.79 MB
MIL4655A122_S37_L001_R2_001_trimmed_unmapped.out.mate2.fastq.gz
106.77 MB
MIL4655A122_S37_L001_R1_001_trimmed.bam.bai
4.25 MB
MIL4655A122_S37_L001_R1_001_trimmed.bam
12.81 GB
MIL4655A122_S37_L001_R1_001_trimmed_stats.txt
1.82 kB
MIL4655A122_S37_L001_R1_001_trimmed_SJ.out.tab
6.84 MB

J2_RIP_STAU1-KD_Input

FASTQ file (paired-end)
MIL4655A120_S31_L001_R1_001.fastq.gz
2.49 GB
MIL4655A120_S31_L001_R2_001.fastq.gz
2.61 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A120_S31_L001_R1_001_fastqc.zip
804.00 kB
MIL4655A120_S31_L001_R2_001_fastqc.zip
829.30 kB

J2_RIP_Ctrl_J2_rep2

FASTQ file (paired-end)
MIL4655A123_S38_L001_R1_001.fastq.gz
1.50 GB
MIL4655A123_S38_L001_R2_001.fastq.gz
1.52 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A123_S38_L001_R1_001_fastqc.zip
821.29 kB
MIL4655A123_S38_L001_R2_001_fastqc.zip
843.73 kB
Samtools idxstats
idxstat_report.txt
5.95 kB
Cutadapt (Corall RNA-Seq, paired-end)
cutadapt_report.txt
1.48 kB
MIL4655A123_S38_L001_R1_001_trimmed.fastq.gz
1.00 GB
MIL4655A123_S38_L001_R2_001_trimmed.fastq.gz
1.15 GB
fastqc
Directory
Subsample FASTQ (paired-end)
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.fastq.gz
37.40 MB
MIL4655A123_S38_L001_R2_001_trimmed_downsampled.fastq.gz
42.15 MB
fastqc
Directory
STAR
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.94 MB
MIL4655A123_S38_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
20.06 MB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.bam.bai
336 B
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.bam
49.66 MB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_stats.txt
1.80 kB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_SJ.out.tab
23.64 kB
STAR
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
37.09 MB
MIL4655A123_S38_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
41.84 MB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.bam.bai
432 B
MIL4655A123_S38_L001_R1_001_trimmed_downsampled.bam
186.64 kB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MIL4655A123_S38_L001_R1_001_trimmed_downsampled_SJ.out.tab
3.42 kB
STAR
MIL4655A123_S38_L001_R1_001_trimmed_unmapped.out.mate1.fastq.gz
89.88 MB
MIL4655A123_S38_L001_R2_001_trimmed_unmapped.out.mate2.fastq.gz
104.94 MB
MIL4655A123_S38_L001_R1_001_trimmed.bam.bai
4.33 MB
MIL4655A123_S38_L001_R1_001_trimmed.bam
13.17 GB
MIL4655A123_S38_L001_R1_001_trimmed_stats.txt
1.82 kB
MIL4655A123_S38_L001_R1_001_trimmed_SJ.out.tab
6.66 MB

J2_RIP_Ctrl_IgG

FASTQ file (paired-end)
MIL4655A121_S52_L001_R1_001.fastq.gz
79.47 MB
MIL4655A121_S52_L001_R2_001.fastq.gz
79.17 MB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A121_S52_L001_R1_001_fastqc.zip
859.35 kB
MIL4655A121_S52_L001_R2_001_fastqc.zip
879.71 kB
Samtools idxstats
idxstat_report.txt
5.85 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.19 MB
Cutadapt (Corall RNA-Seq, paired-end)
cutadapt_report.txt
1.41 kB
MIL4655A121_S52_L001_R1_001_trimmed.fastq.gz
49.80 MB
MIL4655A121_S52_L001_R2_001_trimmed.fastq.gz
56.35 MB
fastqc
Directory
STAR
MIL4655A121_S52_L001_R1_001_trimmed_unmapped.out.mate1.fastq.gz
8.32 MB
MIL4655A121_S52_L001_R2_001_trimmed_unmapped.out.mate2.fastq.gz
9.53 MB
MIL4655A121_S52_L001_R1_001_trimmed.bam.bai
2.58 MB
MIL4655A121_S52_L001_R1_001_trimmed.bam
500.13 MB
MIL4655A121_S52_L001_R1_001_trimmed_stats.txt
1.81 kB
MIL4655A121_S52_L001_R1_001_trimmed_SJ.out.tab
1.57 MB
Subsample FASTQ (paired-end)
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.fastq.gz
37.10 MB
MIL4655A121_S52_L001_R2_001_trimmed_downsampled.fastq.gz
41.84 MB
fastqc
Directory
UMI-tools dedup
MIL4655A121_S52_L001_R1_001_trimmed_dedup.bam
458.72 MB
MIL4655A121_S52_L001_R1_001_trimmed_dedup.log
8.17 kB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_stats.zip
2.08 MB
MIL4655A121_S52_L001_R1_001_trimmed_dedup.bam.bai
2.57 MB
MIL4655A121_S52_L001_R1_001_trimmed_stats.txt
432 B
MIL4655A121_S52_L001_R1_001_trimmed_dedup.bw
3.97 MB
STAR
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
22.57 MB
MIL4655A121_S52_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
25.30 MB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.bam.bai
336 B
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.bam
35.99 MB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_SJ.out.tab
18.12 kB
STAR
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
36.56 MB
MIL4655A121_S52_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
41.29 MB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.bam.bai
1.13 kB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled.bam
648.83 kB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MIL4655A121_S52_L001_R1_001_trimmed_downsampled_SJ.out.tab
7.83 kB
featureCounts
featureCounts_rc.txt.summary
358 B
MIL4655A121_S52_L001_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
4.71 MB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_rc.tab.gz
221.21 kB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_tpm.tab.gz
346.87 kB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_cpm.tab.gz
244.85 kB
MIL4655A121_S52_L001_R1_001_trimmed_dedup_expressions.txt.gz
650.82 kB

J2_RIP_Ctrl_J2_rep1

FASTQ file (paired-end)
MIL4655A122_S37_L001_R1_001.fastq.gz
1.52 GB
MIL4655A122_S37_L001_R2_001.fastq.gz
1.54 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A122_S37_L001_R1_001_fastqc.zip
819.08 kB
MIL4655A122_S37_L001_R2_001_fastqc.zip
841.45 kB
Samtools idxstats
idxstat_report.txt
5.96 kB
Cutadapt (Corall RNA-Seq, paired-end)
cutadapt_report.txt
1.46 kB
MIL4655A122_S37_L001_R1_001_trimmed.fastq.gz
1.02 GB
MIL4655A122_S37_L001_R2_001_trimmed.fastq.gz
1.18 GB
fastqc
Directory
Subsample FASTQ (paired-end)
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.fastq.gz
37.91 MB
MIL4655A122_S37_L001_R2_001_trimmed_downsampled.fastq.gz
42.98 MB
fastqc
Directory
STAR
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
18.73 MB
MIL4655A122_S37_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
21.06 MB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.bam.bai
336 B
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.bam
48.78 MB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_stats.txt
1.80 kB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_SJ.out.tab
26.12 kB
STAR
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
37.58 MB
MIL4655A122_S37_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
42.67 MB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.bam.bai
424 B
MIL4655A122_S37_L001_R1_001_trimmed_downsampled.bam
196.38 kB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MIL4655A122_S37_L001_R1_001_trimmed_downsampled_SJ.out.tab
3.75 kB
STAR
MIL4655A122_S37_L001_R1_001_trimmed_unmapped.out.mate1.fastq.gz
90.79 MB
MIL4655A122_S37_L001_R2_001_trimmed_unmapped.out.mate2.fastq.gz
106.77 MB
MIL4655A122_S37_L001_R1_001_trimmed.bam.bai
4.25 MB
MIL4655A122_S37_L001_R1_001_trimmed.bam
12.81 GB
MIL4655A122_S37_L001_R1_001_trimmed_stats.txt
1.82 kB
MIL4655A122_S37_L001_R1_001_trimmed_SJ.out.tab
6.84 MB

J2_RIP_STAU1-KD_IgG

FASTQ file (paired-end)
MIL4655A124_S53_L001_R1_001.fastq.gz
22.59 MB
MIL4655A124_S53_L001_R2_001.fastq.gz
22.58 MB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A124_S53_L001_R1_001_fastqc.zip
857.94 kB
MIL4655A124_S53_L001_R2_001_fastqc.zip
878.40 kB
Cutadapt (Corall RNA-Seq, paired-end)
cutadapt_report.txt
1.39 kB
MIL4655A124_S53_L001_R1_001_trimmed.fastq.gz
12.87 MB
MIL4655A124_S53_L001_R2_001_trimmed.fastq.gz
14.56 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
5.78 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.19 MB
STAR
MIL4655A124_S53_L001_R1_001_trimmed_unmapped.out.mate1.fastq.gz
1.94 MB
MIL4655A124_S53_L001_R2_001_trimmed_unmapped.out.mate2.fastq.gz
2.23 MB
MIL4655A124_S53_L001_R1_001_trimmed.bam.bai
1.81 MB
MIL4655A124_S53_L001_R1_001_trimmed.bam
137.15 MB
MIL4655A124_S53_L001_R1_001_trimmed_stats.txt
1.80 kB
MIL4655A124_S53_L001_R1_001_trimmed_SJ.out.tab
568.12 kB
Subsample FASTQ (paired-end)
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.fastq.gz
12.84 MB
MIL4655A124_S53_L001_R2_001_trimmed_downsampled.fastq.gz
14.54 MB
fastqc
Directory
UMI-tools dedup
MIL4655A124_S53_L001_R1_001_trimmed_dedup.bam
108.02 MB
MIL4655A124_S53_L001_R1_001_trimmed_dedup.log
5.58 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_stats.zip
757.86 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup.bam.bai
1.80 MB
MIL4655A124_S53_L001_R1_001_trimmed_stats.txt
425 B
MIL4655A124_S53_L001_R1_001_trimmed_dedup.bw
765.28 kB
STAR
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
6.55 MB
MIL4655A124_S53_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
7.37 MB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.bam.bai
336 B
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.bam
14.93 MB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_SJ.out.tab
5.93 kB
STAR
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
12.70 MB
MIL4655A124_S53_L001_R2_001_trimmed_downsampled_unmapped.out.mate2.fastq.gz
14.39 MB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.bam.bai
256 B
MIL4655A124_S53_L001_R1_001_trimmed_downsampled.bam
37.05 kB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MIL4655A124_S53_L001_R1_001_trimmed_downsampled_SJ.out.tab
895 B
featureCounts
featureCounts_rc.txt.summary
355 B
MIL4655A124_S53_L001_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
4.70 MB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_rc.tab.gz
213.01 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_tpm.tab.gz
300.95 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_cpm.tab.gz
227.84 kB
MIL4655A124_S53_L001_R1_001_trimmed_dedup_expressions.txt.gz
578.06 kB

J2_RIP_STAU1-KD_J2_rep1

FASTQ file (paired-end)
MIL4655A125_S20_L001_R1_001.fastq.gz
3.30 GB
MIL4655A125_S20_L001_R2_001.fastq.gz
3.35 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A125_S20_L001_R1_001_fastqc.zip
823.34 kB
MIL4655A125_S20_L001_R2_001_fastqc.zip
841.10 kB

J2_RIP_STAU1-KD_J2_rep2

FASTQ file (paired-end)
MIL4655A126_S21_L001_R1_001.fastq.gz
4.40 GB
MIL4655A126_S21_L001_R2_001.fastq.gz
4.41 GB
fastqc
Directory
stderr.txt
2.37 kB
MIL4655A126_S21_L001_R1_001_fastqc.zip
820.27 kB
MIL4655A126_S21_L001_R2_001_fastqc.zip
834.67 kB

J2_RIP_Ctrl_Input

FASTQ file (paired-end)
MIL4655A119_S30_L001_R1_001.fastq.gz
2.40 GB
MIL4655A119_S30_L001_R2_001.fastq.gz
2.45 GB
fastqc
Directory
stderr.txt
2.49 kB
MIL4655A119_S30_L001_R1_001_fastqc.zip
808.77 kB
MIL4655A119_S30_L001_R2_001_fastqc.zip
828.14 kB