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Folder iconJ2 hiCLIP

Cristina Militti
Feb. 4, 2022

merged_lane.fastq.gz

FASTQ file (single-end)
merged_lane.fastq.gz
15.83 GB
fastqc
Directory
stderr.txt
895 B
merged_lane_fastqc.zip
703.22 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)
demux_nomatch.fastq.gz
10.58 GB
fastqc
Directory
demux_nomatch_fastqc.zip
713.09 kB

temp:dsRNA_temp:SKmel_STAU1 shRNA mock_202112_CM_J2

FASTQ file (CLIP)
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2.fastq.gz
5.61 MB
fastqc
Directory
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_fastqc.zip
1.17 MB
Cutadapt (single-end)
report.txt
686 B
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed.fastq.gz
5.53 MB
fastqc
Directory
STAR
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
3.48 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed.bam.bai
3.92 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed.bam
18.09 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed_stats.txt
1.79 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed_SJ.out.tab
57.41 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed.bw
26.15 kB
iCount xlsites
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_skipped.bam
3.08 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single.bed.gz
113.75 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
1.64 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
114.39 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single.bedgraph
397.56 kB
iCount summary
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
584 B
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
960 B
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
598.68 kB
iCount RNA-maps
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single.tar.gz
348.56 kB
Paraclu
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
274 B
PEKA
4mer analysis of temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome.tar.gz
143.66 kB

temp:dsRNA_temp:SKmel_Ctrl shRNA mock_202112_CM_J2

FASTQ file (CLIP)
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2.fastq.gz
5.04 MB
fastqc
Directory
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_fastqc.zip
957.75 kB
Cutadapt (single-end)
report.txt
686 B
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed.fastq.gz
4.81 MB
fastqc
Directory
STAR
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
2.43 MB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed.bam.bai
3.53 MB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed.bam
17.77 MB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed_stats.txt
1.79 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed_SJ.out.tab
58.36 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed.bw
25.51 kB
iCount xlsites
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_skipped.bam
3.08 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single.bed.gz
161.03 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
1.33 MB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
162.05 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single.bedgraph
574.12 kB
iCount summary
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
592 B
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
971 B
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
743.46 kB
iCount RNA-maps
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single.tar.gz
364.55 kB
Paraclu
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
624 B
PEKA
4mer analysis of temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome.tar.gz
174.16 kB

temp:dsRNA_temp:SKmel_Ctrl shRNA J2 rep2_202112_CM_J2

FASTQ file (CLIP)
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2.fastq.gz
221.44 MB
fastqc
Directory
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_fastqc.zip
857.03 kB
Cutadapt (single-end)
report.txt
689 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed.fastq.gz
227.29 MB
fastqc
Directory
STAR
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
104.60 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed.bam.bai
4.26 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed.bam
813.01 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed_stats.txt
1.81 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed_SJ.out.tab
2.24 MB
iCount xlsites
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_skipped.bam
7.93 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.bed.gz
8.11 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
17.19 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
8.18 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.bedgraph
36.42 MB
Paraclu
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
24.09 kB
iCount summary
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
616 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
1017 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
2.55 MB
iCount RNA-maps
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.tar.gz
1.02 MB
PEKA
4mer analysis of temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome.tar.gz
580.45 kB

temp:dsRNA_temp:SKmel_STAU1 shRNA J2 rep2_202112_CM_J2

FASTQ file (CLIP)
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2.fastq.gz
237.92 MB
fastqc
Directory
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_fastqc.zip
840.16 kB
Cutadapt (single-end)
report.txt
690 B
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed.fastq.gz
244.15 MB
fastqc
Directory
STAR
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
109.14 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed.bam.bai
4.18 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed.bam
844.36 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed_stats.txt
1.81 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed_SJ.out.tab
2.38 MB
iCount xlsites
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_skipped.bam
7.43 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.bed.gz
9.72 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
18.53 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
9.80 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.bedgraph
44.03 MB
iCount summary
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
620 B
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
2.58 MB
iCount RNA-maps
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.tar.gz
1.13 MB
Paraclu
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
33.21 kB
PEKA
4mer analysis of temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome.tar.gz
608.42 kB

temp:dsRNA_temp:SKmel_Ctrl shRNA J2 rep1_202112_CM_J2

FASTQ file (CLIP)
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2.fastq.gz
426.17 MB
fastqc
Directory
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_fastqc.zip
783.59 kB
iCount RNA-maps
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.tar.gz
1.36 MB
Paraclu
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
71.20 kB
Cutadapt (single-end)
report.txt
689 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed.fastq.gz
439.54 MB
fastqc
Directory
STAR
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
196.04 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed.bam.bai
4.73 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed.bam
1.52 GB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed_stats.txt
1.81 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed_SJ.out.tab
4.16 MB
iCount xlsites
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_skipped.bam
13.63 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.bed.gz
14.37 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
24.08 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
14.54 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.bedgraph
65.25 MB
iCount summary
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
624 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
2.76 MB
PEKA
4mer analysis of temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome.tar.gz
680.22 kB

No Sample

FASTQ file (CLIP)
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_fastqc.zip
1.17 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2.fastq.gz
5.61 MB
fastqc
Directory
Upload iCount sample annotation
E166 J2 hiCLIP annotation.xlsx
222.74 kB
E166 J2 hiCLIP annotation.tab.gz
1006 B
FASTQ file (single-end)
merged_lane.fastq.gz
15.83 GB
fastqc
Directory
stderr.txt
895 B
merged_lane_fastqc.zip
703.22 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
623 B
FASTQ file (CLIP)
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2.fastq.gz
221.44 MB
fastqc
Directory
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_fastqc.zip
857.03 kB
FASTQ file (CLIP)
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2.fastq.gz
237.92 MB
fastqc
Directory
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_fastqc.zip
840.16 kB
FASTQ file (CLIP)
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2.fastq.gz
787.68 MB
fastqc
Directory
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_fastqc.zip
780.98 kB
FASTQ file (CLIP)
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2.fastq.gz
426.17 MB
fastqc
Directory
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_fastqc.zip
783.59 kB
iCount RNA-maps
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.tar.gz
1.36 MB
iCount RNA-maps
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.tar.gz
1.94 MB
Paraclu
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
71.20 kB
FASTQ file (CLIP)
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2.fastq.gz
5.04 MB
fastqc
Directory
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_fastqc.zip
957.75 kB
Cutadapt (single-end)
report.txt
686 B
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed.fastq.gz
5.53 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
690 B
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed.fastq.gz
244.15 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
689 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed.fastq.gz
227.29 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
689 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed.fastq.gz
439.54 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
686 B
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed.fastq.gz
4.81 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
690 B
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed.fastq.gz
812.29 MB
fastqc
Directory
STAR
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
3.48 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed.bam.bai
3.92 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed.bam
18.09 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed_stats.txt
1.79 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed_SJ.out.tab
57.41 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_trimmed.bw
26.15 kB
STAR
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
104.60 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed.bam.bai
4.26 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed.bam
813.01 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed_stats.txt
1.81 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_trimmed_SJ.out.tab
2.24 MB
STAR
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
109.14 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed.bam.bai
4.18 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed.bam
844.36 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed_stats.txt
1.81 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_trimmed_SJ.out.tab
2.38 MB
STAR
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
2.43 MB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed.bam.bai
3.53 MB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed.bam
17.77 MB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed_stats.txt
1.79 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed_SJ.out.tab
58.36 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_trimmed.bw
25.51 kB
STAR
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
196.04 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed.bam.bai
4.73 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed.bam
1.52 GB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed_stats.txt
1.81 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_trimmed_SJ.out.tab
4.16 MB
iCount xlsites
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_skipped.bam
3.08 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single.bed.gz
113.75 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
1.64 MB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
114.39 kB
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single.bedgraph
397.56 kB
STAR
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
348.11 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed.bam.bai
5.80 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed.bam
2.74 GB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed_stats.txt
1.82 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed_SJ.out.tab
6.44 MB
FASTQ file (CLIP)
demux_nomatch.fastq.gz
10.58 GB
fastqc
Directory
demux_nomatch_fastqc.zip
713.09 kB
iCount xlsites
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_skipped.bam
3.08 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single.bed.gz
161.03 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
1.33 MB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
162.05 kB
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single.bedgraph
574.12 kB
iCount xlsites
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_skipped.bam
7.93 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.bed.gz
8.11 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
17.19 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
8.18 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.bedgraph
36.42 MB
Paraclu
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
24.09 kB
iCount summary
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
584 B
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
960 B
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
598.68 kB
iCount RNA-maps
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single.tar.gz
348.56 kB
Paraclu
temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
274 B
iCount xlsites
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_skipped.bam
7.43 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.bed.gz
9.72 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
18.53 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
9.80 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.bedgraph
44.03 MB
iCount summary
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
592 B
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
971 B
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
743.46 kB
iCount RNA-maps
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single.tar.gz
364.55 kB
Paraclu
temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
624 B
iCount summary
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
616 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
1017 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
2.55 MB
iCount RNA-maps
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.tar.gz
1.02 MB
iCount xlsites
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_skipped.bam
13.63 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.bed.gz
14.37 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
24.08 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
14.54 MB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.bedgraph
65.25 MB
iCount summary
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
620 B
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
2.58 MB
PEKA
4mer analysis of temp-dsrna-temp-skmel-stau1-shrna-mock-202112-cm-j2_mapped_to_genome.tar.gz
143.66 kB
iCount RNA-maps
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single.tar.gz
1.13 MB
Paraclu
temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
33.21 kB
PEKA
4mer analysis of temp-dsrna-temp-skmel-stau1-shrna-j2-rep2-202112-cm-j2_mapped_to_genome.tar.gz
608.42 kB
PEKA
4mer analysis of temp-dsrna-temp-skmel-ctrl-shrna-mock-202112-cm-j2_mapped_to_genome.tar.gz
174.16 kB
iCount summary
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
624 B
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
2.76 MB
PEKA
4mer analysis of temp-dsrna-temp-skmel-ctrl-shrna-j2-rep2-202112-cm-j2_mapped_to_genome.tar.gz
580.45 kB
iCount xlsites
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_skipped.bam
23.80 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.bed.gz
27.78 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
45.30 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
28.12 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.bedgraph
127.98 MB
Paraclu
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
252.16 kB
iCount summary
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
626 B
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
3.08 MB
PEKA
4mer analysis of temp-dsrna-temp-skmel-ctrl-shrna-j2-rep1-202112-cm-j2_mapped_to_genome.tar.gz
680.22 kB
PEKA
4mer analysis of temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome.tar.gz
758.61 kB

temp:dsRNA_temp:SKmel_STAU1 shRNA J2 rep1_202112_CM_J2

FASTQ file (CLIP)
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2.fastq.gz
787.68 MB
fastqc
Directory
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_fastqc.zip
780.98 kB
iCount RNA-maps
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.tar.gz
1.94 MB
Cutadapt (single-end)
report.txt
690 B
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed.fastq.gz
812.29 MB
fastqc
Directory
STAR
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed_unmapped.out.mate1.fastq.gz
348.11 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed.bam.bai
5.80 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed.bam
2.74 GB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed_stats.txt
1.82 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_trimmed_SJ.out.tab
6.44 MB
iCount xlsites
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_skipped.bam
23.80 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.bed.gz
27.78 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_singleAndMulti.bed.gz
45.30 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_reads_single.bed.gz
28.12 MB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single.bedgraph
127.98 MB
Paraclu
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_peaks.bed.gz
252.16 kB
iCount summary
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_type.tsv
626 B
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome_single_summary_gene.tsv
3.08 MB
PEKA
4mer analysis of temp-dsrna-temp-skmel-stau1-shrna-j2-rep1-202112-cm-j2_mapped_to_genome.tar.gz
758.61 kB