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Folder iconSTAU1/2 KD quantseq

Cristina Militti
July 28, 2021

No Sample

BBDuk (single-end)
fastqc
Directory
STAU1_CM_cells_rep1_preprocessed.fastq.gz
344.40 MB
STAU1_CM_cells_rep1_statistics.txt.gz
487 B
DESeq2
diffexp_deseq2.tab.gz
679.88 kB
count_matrix.tab.gz
125.25 kB
de_file.tab.gz
448.83 kB
Gene set
STAU1A_cell_line_STAU1-2_KD_vs_STAU1A_cells_DESeq2_logFC1.0_FDR0.05_down.tab.gz
1.58 kB
Gene set
STAU1A_cell_line_STAU1-2_KD_vs_STAU1A_cells_DESeq2_logFC1.0_FDR0.05_up.tab.gz
1.01 kB
Gene set
STAU1A_cell_line_STAU1-2_KD_vs_STAU1A_cells_DESeq2_logFC1.0_FDR0.05_all.tab.gz
39.28 kB
DESeq2
de_file.tab.gz
453.85 kB
diffexp_deseq2.tab.gz
677.58 kB
count_matrix.tab.gz
116.26 kB
Gene set
STAU2_cells_STAU2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_all.tab.gz
37.00 kB
Gene set
STAU2_cells_STAU2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_up.tab.gz
768 B
Gene set
STAU2_cells_STAU2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_down.tab.gz
825 B
DESeq2
de_file.tab.gz
435.24 kB
diffexp_deseq2.tab.gz
660.27 kB
count_matrix.tab.gz
120.97 kB
Gene set
STAU1_cell_line_STAU1_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_up.tab.gz
111 B
Gene set
STAU1_cell_line_STAU1_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_down.tab.gz
138 B
Gene set
STAU1_cell_line_STAU1_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_all.tab.gz
39.34 kB
Gene set
STAU1A_cell_line_STAU1-2_KD_vs_STAU1-2_KD_plus_STAU1A_DESeq2_logFC1.0_FDR0.05_down.tab.gz
119 B
Gene set
STAU1A_cell_line_STAU1-2_KD_vs_STAU1-2_KD_plus_STAU1A_DESeq2_logFC1.0_FDR0.05_up.tab.gz
140 B
Gene set
STAU1A_cell_line_STAU1-2_KD_vs_STAU1-2_KD_plus_STAU1A_DESeq2_logFC1.0_FDR0.05_all.tab.gz
37.75 kB
DESeq2
de_file.tab.gz
490.85 kB
diffexp_deseq2.tab.gz
732.58 kB
count_matrix.tab.gz
126.36 kB
Gene set
STAU2_cell_line_STAU2_KD_vs_STAU2_KD_+STAU2_rescue_DESeq2_logFC1.0_FDR0.05_all.tab.gz
37.27 kB
DESeq2
de_file.tab.gz
427.34 kB
diffexp_deseq2.tab.gz
646.97 kB
count_matrix.tab.gz
118.36 kB
Gene set
STAU2_cell_line_STAU2_KD_vs_STAU2_KD_+STAU2_rescue_DESeq2_logFC1.0_FDR0.05_down.tab.gz
130 B
DESeq2
de_file.tab.gz
447.07 kB
diffexp_deseq2.tab.gz
677.87 kB
count_matrix.tab.gz
123.75 kB
Gene set
STAU1_CM_cell_line_STAU1-2_KD_vs_STAU1-2_KD_+_STAU1_rescue_DESeq2_logFC1.0_FDR0.05_all.tab.gz
38.89 kB
FASTQ file (single-end)
STAU1_CM_cells_rep2.fastq.gz
208.09 MB
fastqc
Directory
stderr.txt
1.03 kB
STAU1_CM_cells_rep2_fastqc.zip
861.41 kB
FASTQ file (single-end)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2.fastq.gz
236.02 MB
fastqc
Directory
stderr.txt
1.58 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_fastqc.zip
878.29 kB
FASTQ file (single-end)
STAU2 cell line STAU2 KD + STAU2 rescue rep2.fastq.gz
464.88 MB
fastqc
Directory
stderr.txt
1.52 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_fastqc.zip
870.20 kB
FASTQ file (single-end)
STAU1 CM cell line STAU1 KD rep2.fastq.gz
234.42 MB
fastqc
Directory
stderr.txt
1.28 kB
STAU1 CM cell line STAU1 KD rep2_fastqc.zip
875.89 kB
FASTQ file (single-end)
STAU1B_MM_cells_rep1.fastq.gz
309.89 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU1B_MM_cells_rep1_fastqc.zip
860.09 kB
FASTQ file (single-end)
STAU1_CM_cells_rep1.fastq.gz
354.27 MB
fastqc
Directory
stderr.txt
1.03 kB
STAU1_CM_cells_rep1_fastqc.zip
862.22 kB
FASTQ file (single-end)
STAU1A_MM_cells_rep1.fastq.gz
339.48 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU1A_MM_cells_rep1_fastqc.zip
867.40 kB
FASTQ file (single-end)
STAU2_MM _cells_rep1.fastq.gz
301.81 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU2_MM _cells_rep1_fastqc.zip
870.03 kB
FASTQ file (single-end)
STAU1B_MM_cells_rep2.fastq.gz
297.00 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU1B_MM_cells_rep2_fastqc.zip
853.59 kB
FASTQ file (single-end)
STAU1A_MM_cells_rep2.fastq.gz
525.00 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU1A_MM_cells_rep2_fastqc.zip
863.00 kB
FASTQ file (single-end)
STAU2_MM_cells_rep2.fastq.gz
266.49 MB
fastqc
Directory
stderr.txt
1.03 kB
STAU2_MM_cells_rep2_fastqc.zip
865.55 kB
FASTQ file (single-end)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1.fastq.gz
209.05 MB
fastqc
Directory
stderr.txt
1.66 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_fastqc.zip
881.71 kB
FASTQ file (single-end)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1.fastq.gz
286.84 MB
fastqc
Directory
stderr.txt
1.64 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_fastqc.zip
868.09 kB
FASTQ file (single-end)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1.fastq.gz
389.30 MB
fastqc
Directory
stderr.txt
1.58 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_fastqc.zip
872.69 kB
FASTQ file (single-end)
STAU1 CM cell line STAU1 KD rep1.fastq.gz
300.42 MB
fastqc
Directory
stderr.txt
1.28 kB
STAU1 CM cell line STAU1 KD rep1_fastqc.zip
876.83 kB
FASTQ file (single-end)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2.fastq.gz
238.05 MB
fastqc
Directory
stderr.txt
1.66 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_fastqc.zip
877.74 kB
FASTQ file (single-end)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2.fastq.gz
331.75 MB
fastqc
Directory
stderr.txt
1.64 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_fastqc.zip
867.40 kB
FASTQ file (single-end)
STAU2 cell line Ctrl single KD (60 pmoles) rep2.fastq.gz
181.56 MB
fastqc
Directory
stderr.txt
1.58 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_fastqc.zip
880.78 kB
FASTQ file (single-end)
STAU2 cell line Ctrl double KD (180 pmoles) rep1.fastq.gz
297.48 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_fastqc.zip
882.76 kB
FASTQ file (single-end)
STAU2 cell line STAU2 KD rep2.fastq.gz
463.94 MB
fastqc
Directory
stderr.txt
1.23 kB
STAU2 cell line STAU2 KD rep2_fastqc.zip
867.69 kB
FASTQ file (single-end)
STAU2 cell line STAU2 KD + STAU2 rescue rep2.fastq.gz
382.67 MB
fastqc
Directory
stderr.txt
1.52 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_fastqc.zip
877.40 kB
FASTQ file (single-end)
STAU2 cell line Ctrl double KD (180 pmoles) rep2.fastq.gz
375.34 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_fastqc.zip
873.29 kB
FASTQ file (single-end)
STAU2 cell line Ctrl single KD (60 pmoles) rep2.fastq.gz
270.23 MB
fastqc
Directory
stderr.txt
1.58 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_fastqc.zip
872.13 kB
FASTQ file (single-end)
STAU2 cell line STAU2 KD rep2.fastq.gz
387.73 MB
fastqc
Directory
stderr.txt
1.23 kB
STAU2 cell line STAU2 KD rep2_fastqc.zip
875.50 kB
FASTQ file (single-end)
STAU1A cell line STAU1-2 KD rep 2.fastq.gz
357.20 MB
fastqc
Directory
stderr.txt
1.30 kB
STAU1A cell line STAU1-2 KD rep 2_fastqc.zip
875.16 kB
FASTQ file (single-end)
STAU1B cell line STAU1-2 KD rep 1.fastq.gz
315.92 MB
fastqc
Directory
stderr.txt
1.30 kB
STAU1B cell line STAU1-2 KD rep 1_fastqc.zip
862.62 kB
FASTQ file (single-end)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1.fastq.gz
334.57 MB
fastqc
Directory
stderr.txt
1.62 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_fastqc.zip
865.99 kB
FASTQ file (single-end)
STAU1 CM cell line STAU1-2 KD rep1.fastq.gz
393.07 MB
fastqc
Directory
stderr.txt
1.32 kB
STAU1 CM cell line STAU1-2 KD rep1_fastqc.zip
866.93 kB
FASTQ file (single-end)
STAU1A cell line STAU1-2 KD rep 1.fastq.gz
322.48 MB
fastqc
Directory
stderr.txt
1.30 kB
STAU1A cell line STAU1-2 KD rep 1_fastqc.zip
867.52 kB
FASTQ file (single-end)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2.fastq.gz
376.82 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_fastqc.zip
877.66 kB
FASTQ file (single-end)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1.fastq.gz
291.01 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_fastqc.zip
860.94 kB
FASTQ file (single-end)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1.fastq.gz
373.13 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_fastqc.zip
873.95 kB
FASTQ file (single-end)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2.fastq.gz
377.56 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_fastqc.zip
880.44 kB
FASTQ file (single-end)
STAU1B cell line STAU1-2 KD rep 2.fastq.gz
368.19 MB
fastqc
Directory
stderr.txt
1.30 kB
STAU1B cell line STAU1-2 KD rep 2_fastqc.zip
876.42 kB
FASTQ file (single-end)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2.fastq.gz
286.59 MB
fastqc
Directory
stderr.txt
1.62 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_fastqc.zip
875.28 kB
FASTQ file (single-end)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1.fastq.gz
383.83 MB
fastqc
Directory
stderr.txt
1.56 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_fastqc.zip
877.27 kB
FASTQ file (single-end)
STAU2 cell line STAU2-STAU1 KD rep1.fastq.gz
360.68 MB
fastqc
Directory
stderr.txt
1.34 kB
STAU2 cell line STAU2-STAU1 KD rep1_fastqc.zip
879.27 kB
FASTQ file (single-end)
STAU1 CM cell line STAU1-2 KD rep2.fastq.gz
371.39 MB
fastqc
Directory
stderr.txt
1.32 kB
STAU1 CM cell line STAU1-2 KD rep2_fastqc.zip
876.34 kB
FASTQ file (single-end)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2.fastq.gz
423.78 MB
fastqc
Directory
stderr.txt
1.56 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_fastqc.zip
868.64 kB
FASTQ file (single-end)
STAU2 cell line STAU2-1 KD rep2.fastq.gz
377.86 MB
fastqc
Directory
stderr.txt
1.26 kB
STAU2 cell line STAU2-1 KD rep2_fastqc.zip
871.78 kB
BBDuk (single-end)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed.fastq.gz
203.55 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_statistics.txt.gz
452 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.29 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed.bam.bai
2.70 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed.bam
212.55 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_SJ.out.tab
336.12 kB
HTSeq-count (CPM)
STAU2 cell line STAU2 KD rep2_preprocessed_HTseq_rc.txt.gz
186.61 kB
STAU2 cell line STAU2 KD rep2_preprocessed_rc.tab.gz
186.49 kB
STAU2 cell line STAU2 KD rep2_preprocessed_cpm.tab.gz
233.81 kB
STAU2 cell line STAU2 KD rep2_preprocessed_expressions.txt.gz
496.00 kB
BBDuk (single-end)
STAU1A_MM_cells_rep1_preprocessed.fastq.gz
328.19 MB
STAU1A_MM_cells_rep1_statistics.txt.gz
497 B
fastqc
Directory
BBDuk (single-end)
STAU1A_MM_cells_rep2_preprocessed.fastq.gz
509.36 MB
STAU1A_MM_cells_rep2_statistics.txt.gz
484 B
fastqc
Directory
BBDuk (single-end)
STAU1B_MM_cells_rep1_preprocessed.fastq.gz
303.05 MB
STAU1B_MM_cells_rep1_statistics.txt.gz
479 B
fastqc
Directory
BBDuk (single-end)
STAU1B_MM_cells_rep2_preprocessed.fastq.gz
293.51 MB
STAU1B_MM_cells_rep2_statistics.txt.gz
480 B
fastqc
Directory
BBDuk (single-end)
STAU2_MM_cells_rep2_preprocessed.fastq.gz
262.00 MB
STAU2_MM_cells_rep2_statistics.txt.gz
483 B
fastqc
Directory
BBDuk (single-end)
STAU2_MM _cells_rep1_preprocessed.fastq.gz
294.03 MB
STAU2_MM _cells_rep1_statistics.txt.gz
473 B
fastqc
Directory
BBDuk (single-end)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed.fastq.gz
382.49 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_statistics.txt.gz
487 B
fastqc
Directory
BBDuk (single-end)
STAU1_CM_cells_rep2_preprocessed.fastq.gz
205.28 MB
STAU1_CM_cells_rep2_statistics.txt.gz
478 B
fastqc
Directory
BBDuk (single-end)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.fastq.gz
319.68 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_statistics.txt.gz
446 B
fastqc
Directory
BBDuk (single-end)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed.fastq.gz
226.72 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_statistics.txt.gz
468 B
fastqc
Directory
BBDuk (single-end)
STAU1 CM cell line STAU1 KD rep2_preprocessed.fastq.gz
221.50 MB
STAU1 CM cell line STAU1 KD rep2_statistics.txt.gz
445 B
fastqc
Directory
BBDuk (single-end)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.fastq.gz
280.88 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_statistics.txt.gz
477 B
fastqc
Directory
BBDuk (single-end)
STAU1 CM cell line STAU1 KD rep1_preprocessed.fastq.gz
291.08 MB
STAU1 CM cell line STAU1 KD rep1_statistics.txt.gz
470 B
fastqc
Directory
BBDuk (single-end)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed.fastq.gz
227.35 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_statistics.txt.gz
447 B
fastqc
Directory
BBDuk (single-end)
STAU2 cell line STAU2 KD rep2_preprocessed.fastq.gz
367.07 MB
STAU2 cell line STAU2 KD rep2_statistics.txt.gz
457 B
fastqc
Directory
BBDuk (single-end)
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.fastq.gz
174.01 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_statistics.txt.gz
421 B
fastqc
Directory
STAR
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
1.39 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam.bai
2.80 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam
168.86 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_SJ.out.tab
508.14 kB
BBDuk (single-end)
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed.fastq.gz
285.40 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_statistics.txt.gz
465 B
fastqc
Directory
BBDuk (single-end)
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.fastq.gz
369.26 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_statistics.txt.gz
497 B
fastqc
Directory
STAR
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.14 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.bam.bai
3.28 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.bam
369.32 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_SJ.out.tab
743.89 kB
BBDuk (single-end)
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.fastq.gz
265.60 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_statistics.txt.gz
474 B
fastqc
Directory
BBDuk (single-end)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.fastq.gz
360.24 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_statistics.txt.gz
489 B
fastqc
Directory
BBDuk (single-end)
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed.fastq.gz
368.52 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_statistics.txt.gz
474 B
fastqc
Directory
BBDuk (single-end)
STAU1B cell line STAU1-2 KD rep 2_preprocessed.fastq.gz
354.60 MB
STAU1B cell line STAU1-2 KD rep 2_statistics.txt.gz
487 B
fastqc
Directory
BBDuk (single-end)
STAU1A cell line STAU1-2 KD rep 2_preprocessed.fastq.gz
344.09 MB
STAU1A cell line STAU1-2 KD rep 2_statistics.txt.gz
471 B
fastqc
Directory
STAR
STAU1_CM_cells_rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.46 MB
STAU1_CM_cells_rep1_preprocessed.bam.bai
3.29 MB
STAU1_CM_cells_rep1_preprocessed.bam
313.89 MB
STAU1_CM_cells_rep1_preprocessed_stats.txt
1.81 kB
STAU1_CM_cells_rep1_preprocessed_SJ.out.tab
923.09 kB
BBDuk (single-end)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.fastq.gz
281.98 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_statistics.txt.gz
472 B
fastqc
Directory
BBDuk (single-end)
STAU1A cell line STAU1-2 KD rep 1_preprocessed.fastq.gz
313.36 MB
STAU1A cell line STAU1-2 KD rep 1_statistics.txt.gz
471 B
fastqc
Directory
STAR
STAU1A_MM_cells_rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.47 MB
STAU1A_MM_cells_rep1_preprocessed.bam.bai
3.26 MB
STAU1A_MM_cells_rep1_preprocessed.bam
301.70 MB
STAU1A_MM_cells_rep1_preprocessed_stats.txt
1.81 kB
STAU1A_MM_cells_rep1_preprocessed_SJ.out.tab
813.88 kB
BBDuk (single-end)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed.fastq.gz
274.12 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_statistics.txt.gz
455 B
fastqc
Directory
STAR
STAU1B_MM_cells_rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.23 MB
STAU1B_MM_cells_rep1_preprocessed.bam.bai
3.10 MB
STAU1B_MM_cells_rep1_preprocessed.bam
281.64 MB
STAU1B_MM_cells_rep1_preprocessed_stats.txt
1.81 kB
STAU1B_MM_cells_rep1_preprocessed_SJ.out.tab
808.77 kB
STAR
STAU1A_MM_cells_rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.53 MB
STAU1A_MM_cells_rep2_preprocessed.bam.bai
3.55 MB
STAU1A_MM_cells_rep2_preprocessed.bam
469.72 MB
STAU1A_MM_cells_rep2_preprocessed_stats.txt
1.82 kB
STAU1A_MM_cells_rep2_preprocessed_SJ.out.tab
945.44 kB
BBDuk (single-end)
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.fastq.gz
457.22 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_statistics.txt.gz
478 B
fastqc
Directory
BBDuk (single-end)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed.fastq.gz
327.10 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_statistics.txt.gz
472 B
fastqc
Directory
STAR
STAU1B_MM_cells_rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.05 MB
STAU1B_MM_cells_rep2_preprocessed.bam.bai
2.96 MB
STAU1B_MM_cells_rep2_preprocessed.bam
266.95 MB
STAU1B_MM_cells_rep2_preprocessed_stats.txt
1.81 kB
STAU1B_MM_cells_rep2_preprocessed_SJ.out.tab
719.02 kB
BBDuk (single-end)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed.fastq.gz
368.97 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_statistics.txt.gz
473 B
fastqc
Directory
BBDuk (single-end)
STAU2 cell line STAU2 KD rep2_preprocessed.fastq.gz
450.99 MB
STAU2 cell line STAU2 KD rep2_statistics.txt.gz
494 B
fastqc
Directory
STAR
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_unmapped.out.mate1.fastq.gz
3.18 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.bam.bai
3.34 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.bam
337.35 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_stats.txt
1.81 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_SJ.out.tab
763.92 kB
BBDuk (single-end)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.fastq.gz
358.36 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_statistics.txt.gz
463 B
fastqc
Directory
BBDuk (single-end)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed.fastq.gz
415.65 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_statistics.txt.gz
464 B
fastqc
Directory
BBDuk (single-end)
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed.fastq.gz
345.85 MB
STAU2 cell line STAU2-STAU1 KD rep1_statistics.txt.gz
473 B
fastqc
Directory
STAR
STAU2_MM_cells_rep2_preprocessed_unmapped.out.mate1.fastq.gz
1.87 MB
STAU2_MM_cells_rep2_preprocessed.bam.bai
2.98 MB
STAU2_MM_cells_rep2_preprocessed.bam
235.55 MB
STAU2_MM_cells_rep2_preprocessed_stats.txt
1.81 kB
STAU2_MM_cells_rep2_preprocessed_SJ.out.tab
697.08 kB
BBDuk (single-end)
STAU1 CM cell line STAU1-2 KD rep1_preprocessed.fastq.gz
384.36 MB
STAU1 CM cell line STAU1-2 KD rep1_statistics.txt.gz
459 B
fastqc
Directory
BBDuk (single-end)
STAU1B cell line STAU1-2 KD rep 1_preprocessed.fastq.gz
307.24 MB
STAU1B cell line STAU1-2 KD rep 1_statistics.txt.gz
490 B
fastqc
Directory
STAR
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_unmapped.out.mate1.fastq.gz
1.50 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed.bam.bai
2.73 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed.bam
176.28 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_SJ.out.tab
551.81 kB
BBDuk (single-end)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.fastq.gz
362.18 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_statistics.txt.gz
486 B
fastqc
Directory
STAR
STAU2_MM _cells_rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.24 MB
STAU2_MM _cells_rep1_preprocessed.bam.bai
3.14 MB
STAU2_MM _cells_rep1_preprocessed.bam
269.87 MB
STAU2_MM _cells_rep1_preprocessed_stats.txt
1.81 kB
STAU2_MM _cells_rep1_preprocessed_SJ.out.tab
817.27 kB
STAR
STAU1_CM_cells_rep2_preprocessed_unmapped.out.mate1.fastq.gz
1.42 MB
STAU1_CM_cells_rep2_preprocessed.bam.bai
2.82 MB
STAU1_CM_cells_rep2_preprocessed.bam
181.36 MB
STAU1_CM_cells_rep2_preprocessed_stats.txt
1.81 kB
STAU1_CM_cells_rep2_preprocessed_SJ.out.tab
636.69 kB
BBDuk (single-end)
STAU1 CM cell line STAU1-2 KD rep2_preprocessed.fastq.gz
356.49 MB
STAU1 CM cell line STAU1-2 KD rep2_statistics.txt.gz
463 B
fastqc
Directory
STAR
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.75 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam.bai
3.10 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam
296.02 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_SJ.out.tab
434.14 kB
BBDuk (single-end)
STAU2 cell line STAU2-1 KD rep2_preprocessed.fastq.gz
369.32 MB
STAU2 cell line STAU2-1 KD rep2_statistics.txt.gz
469 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.75 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed.bam.bai
2.97 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed.bam
334.12 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_SJ.out.tab
761.12 kB
STAR
STAU1 CM cell line STAU1 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.20 MB
STAU1 CM cell line STAU1 KD rep2_preprocessed.bam.bai
2.85 MB
STAU1 CM cell line STAU1 KD rep2_preprocessed.bam
205.44 MB
STAU1 CM cell line STAU1 KD rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1 KD rep2_preprocessed_SJ.out.tab
334.07 kB
STAR
STAU1 CM cell line STAU1 KD rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.12 MB
STAU1 CM cell line STAU1 KD rep1_preprocessed.bam.bai
2.95 MB
STAU1 CM cell line STAU1 KD rep1_preprocessed.bam
256.05 MB
STAU1 CM cell line STAU1 KD rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1 KD rep1_preprocessed_SJ.out.tab
657.03 kB
STAR
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.11 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed.bam.bai
2.87 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed.bam
205.57 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_SJ.out.tab
357.27 kB
STAR
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_unmapped.out.mate1.fastq.gz
1.86 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.bam.bai
2.93 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.bam
243.90 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_SJ.out.tab
660.73 kB
STAR
STAU2 cell line STAU2 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.24 MB
STAU2 cell line STAU2 KD rep2_preprocessed.bam.bai
3.47 MB
STAU2 cell line STAU2 KD rep2_preprocessed.bam
370.95 MB
STAU2 cell line STAU2 KD rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2 KD rep2_preprocessed_SJ.out.tab
742.02 kB
STAR
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
1.63 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam.bai
2.81 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam
239.66 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_SJ.out.tab
620.23 kB
STAR
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.17 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed.bam.bai
3.14 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed.bam
271.00 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_stats.txt
1.81 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_SJ.out.tab
682.29 kB
STAR
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_unmapped.out.mate1.fastq.gz
3.49 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.bam.bai
3.36 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.bam
356.71 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_stats.txt
1.81 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_SJ.out.tab
647.54 kB
STAR
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.31 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed.bam.bai
3.04 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed.bam
326.32 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_SJ.out.tab
753.91 kB
STAR
STAU1A cell line STAU1-2 KD rep 2_preprocessed_unmapped.out.mate1.fastq.gz
3.16 MB
STAU1A cell line STAU1-2 KD rep 2_preprocessed.bam.bai
3.24 MB
STAU1A cell line STAU1-2 KD rep 2_preprocessed.bam
349.88 MB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_stats.txt
1.81 kB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_SJ.out.tab
661.40 kB
STAR
STAU1B cell line STAU1-2 KD rep 2_preprocessed_unmapped.out.mate1.fastq.gz
3.48 MB
STAU1B cell line STAU1-2 KD rep 2_preprocessed.bam.bai
3.21 MB
STAU1B cell line STAU1-2 KD rep 2_preprocessed.bam
357.38 MB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_stats.txt
1.81 kB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_SJ.out.tab
674.34 kB
STAR
STAU1A cell line STAU1-2 KD rep 1_preprocessed_unmapped.out.mate1.fastq.gz
2.47 MB
STAU1A cell line STAU1-2 KD rep 1_preprocessed.bam.bai
3.11 MB
STAU1A cell line STAU1-2 KD rep 1_preprocessed.bam
294.62 MB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_stats.txt
1.81 kB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_SJ.out.tab
716.32 kB
HTSeq-count (CPM)
STAU1_CM_cells_rep1_preprocessed_HTseq_rc.txt.gz
190.60 kB
STAU1_CM_cells_rep1_preprocessed_rc.tab.gz
190.48 kB
STAU1_CM_cells_rep1_preprocessed_cpm.tab.gz
244.45 kB
STAU1_CM_cells_rep1_preprocessed_expressions.txt.gz
511.24 kB
STAR
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_unmapped.out.mate1.fastq.gz
2.49 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.bam.bai
3.06 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.bam
258.34 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_stats.txt
1.81 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_SJ.out.tab
708.65 kB
HTSeq-count (CPM)
STAU1A_MM_cells_rep1_preprocessed_HTseq_rc.txt.gz
189.63 kB
STAU1A_MM_cells_rep1_preprocessed_rc.tab.gz
189.51 kB
STAU1A_MM_cells_rep1_preprocessed_cpm.tab.gz
242.67 kB
STAU1A_MM_cells_rep1_preprocessed_expressions.txt.gz
508.69 kB
STAR
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.01 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed.bam.bai
2.96 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed.bam
265.16 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_SJ.out.tab
382.50 kB
STAR
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.22 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.bam.bai
3.17 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.bam
434.03 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_SJ.out.tab
803.10 kB
HTSeq-count (CPM)
STAU1B_MM_cells_rep1_preprocessed_HTseq_rc.txt.gz
189.13 kB
STAU1B_MM_cells_rep1_preprocessed_rc.tab.gz
189.02 kB
STAU1B_MM_cells_rep1_preprocessed_cpm.tab.gz
239.61 kB
STAU1B_MM_cells_rep1_preprocessed_expressions.txt.gz
504.63 kB
STAR
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.75 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed.bam.bai
3.00 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed.bam
295.07 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_SJ.out.tab
711.19 kB
STAR
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_unmapped.out.mate1.fastq.gz
3.11 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed.bam.bai
3.26 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed.bam
366.04 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_SJ.out.tab
740.58 kB
STAR
STAU2 cell line STAU2 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.28 MB
STAU2 cell line STAU2 KD rep2_preprocessed.bam.bai
3.36 MB
STAU2 cell line STAU2 KD rep2_preprocessed.bam
424.22 MB
STAU2 cell line STAU2 KD rep2_preprocessed_stats.txt
1.82 kB
STAU2 cell line STAU2 KD rep2_preprocessed_SJ.out.tab
808.03 kB
HTSeq-count (CPM)
STAU1B_MM_cells_rep2_preprocessed_HTseq_rc.txt.gz
188.44 kB
STAU1B_MM_cells_rep2_preprocessed_rc.tab.gz
188.32 kB
STAU1B_MM_cells_rep2_preprocessed_cpm.tab.gz
237.35 kB
STAU1B_MM_cells_rep2_preprocessed_expressions.txt.gz
501.44 kB
HTSeq-count (CPM)
STAU1A_MM_cells_rep2_preprocessed_HTseq_rc.txt.gz
191.85 kB
STAU1A_MM_cells_rep2_preprocessed_rc.tab.gz
191.73 kB
STAU1A_MM_cells_rep2_preprocessed_cpm.tab.gz
251.01 kB
STAU1A_MM_cells_rep2_preprocessed_expressions.txt.gz
520.83 kB
STAR
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.94 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed.bam.bai
3.12 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed.bam
382.48 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_SJ.out.tab
766.24 kB
STAR
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.76 MB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed.bam.bai
3.21 MB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed.bam
345.77 MB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_SJ.out.tab
723.14 kB
STAR
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.88 MB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed.bam.bai
3.08 MB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed.bam
348.62 MB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_SJ.out.tab
761.44 kB
STAR
STAU1B cell line STAU1-2 KD rep 1_preprocessed_unmapped.out.mate1.fastq.gz
2.63 MB
STAU1B cell line STAU1-2 KD rep 1_preprocessed.bam.bai
3.03 MB
STAU1B cell line STAU1-2 KD rep 1_preprocessed.bam
286.20 MB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_stats.txt
1.81 kB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_SJ.out.tab
712.09 kB
STAR
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_unmapped.out.mate1.fastq.gz
3.62 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.bam.bai
3.31 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.bam
351.80 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_stats.txt
1.81 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_SJ.out.tab
705.72 kB
HTSeq-count (CPM)
STAU2_MM_cells_rep2_preprocessed_HTseq_rc.txt.gz
187.81 kB
STAU2_MM_cells_rep2_preprocessed_rc.tab.gz
187.69 kB
STAU2_MM_cells_rep2_preprocessed_cpm.tab.gz
236.27 kB
STAU2_MM_cells_rep2_preprocessed_expressions.txt.gz
499.62 kB
HTSeq-count (CPM)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_HTseq_rc.txt.gz
186.53 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_rc.tab.gz
186.42 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_cpm.tab.gz
232.36 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_expressions.txt.gz
494.54 kB
HTSeq-count (CPM)
STAU2_MM _cells_rep1_preprocessed_HTseq_rc.txt.gz
189.12 kB
STAU2_MM _cells_rep1_preprocessed_rc.tab.gz
189.00 kB
STAU2_MM _cells_rep1_preprocessed_cpm.tab.gz
240.55 kB
STAU2_MM _cells_rep1_preprocessed_expressions.txt.gz
505.99 kB
HTSeq-count (CPM)
STAU1_CM_cells_rep2_preprocessed_HTseq_rc.txt.gz
187.19 kB
STAU1_CM_cells_rep2_preprocessed_rc.tab.gz
187.07 kB
STAU1_CM_cells_rep2_preprocessed_cpm.tab.gz
232.52 kB
STAU1_CM_cells_rep2_preprocessed_expressions.txt.gz
494.17 kB
STAR
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.51 MB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed.bam.bai
3.15 MB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed.bam
348.72 MB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_SJ.out.tab
447.98 kB
STAR
STAU2 cell line STAU2-1 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.57 MB
STAU2 cell line STAU2-1 KD rep2_preprocessed.bam.bai
3.04 MB
STAU2 cell line STAU2-1 KD rep2_preprocessed.bam
345.70 MB
STAU2 cell line STAU2-1 KD rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2-1 KD rep2_preprocessed_SJ.out.tab
733.35 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_HTseq_rc.txt.gz
190.45 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_rc.tab.gz
190.33 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_cpm.tab.gz
245.41 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_expressions.txt.gz
512.62 kB
HTSeq-count (CPM)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
188.14 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_rc.tab.gz
188.02 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_cpm.tab.gz
239.19 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_expressions.txt.gz
504.79 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1 KD rep2_preprocessed_HTseq_rc.txt.gz
185.82 kB
STAU1 CM cell line STAU1 KD rep2_preprocessed_rc.tab.gz
185.70 kB
STAU1 CM cell line STAU1 KD rep2_preprocessed_cpm.tab.gz
232.12 kB
STAU1 CM cell line STAU1 KD rep2_preprocessed_expressions.txt.gz
494.62 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1 KD rep1_preprocessed_HTseq_rc.txt.gz
188.59 kB
STAU1 CM cell line STAU1 KD rep1_preprocessed_rc.tab.gz
188.47 kB
STAU1 CM cell line STAU1 KD rep1_preprocessed_cpm.tab.gz
239.09 kB
STAU1 CM cell line STAU1 KD rep1_preprocessed_expressions.txt.gz
504.58 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_HTseq_rc.txt.gz
185.46 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_rc.tab.gz
185.34 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_cpm.tab.gz
230.79 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_expressions.txt.gz
492.75 kB
HTSeq-count (CPM)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_HTseq_rc.txt.gz
188.41 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_rc.tab.gz
188.29 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_cpm.tab.gz
238.95 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_expressions.txt.gz
503.80 kB
HTSeq-count (CPM)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
186.13 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_rc.tab.gz
186.01 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_cpm.tab.gz
232.02 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_expressions.txt.gz
494.83 kB
HTSeq-count (CPM)
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
184.17 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_rc.tab.gz
184.06 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_cpm.tab.gz
225.21 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_expressions.txt.gz
484.28 kB
HTSeq-count (CPM)
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_HTseq_rc.txt.gz
187.36 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_rc.tab.gz
187.24 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_cpm.tab.gz
235.12 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_expressions.txt.gz
498.01 kB
HTSeq-count (CPM)
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_HTseq_rc.txt.gz
186.62 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_rc.tab.gz
186.50 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_cpm.tab.gz
234.09 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_expressions.txt.gz
496.57 kB
HTSeq-count (CPM)
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
186.74 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_rc.tab.gz
186.63 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_cpm.tab.gz
233.44 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_expressions.txt.gz
496.25 kB
HTSeq-count (CPM)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_HTseq_rc.txt.gz
188.43 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_rc.tab.gz
188.31 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_cpm.tab.gz
238.95 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_expressions.txt.gz
504.36 kB
HTSeq-count (CPM)
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
188.87 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_rc.tab.gz
188.75 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_cpm.tab.gz
240.51 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_expressions.txt.gz
505.53 kB
HTSeq-count (CPM)
STAU1A cell line STAU1-2 KD rep 2_preprocessed_HTseq_rc.txt.gz
187.11 kB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_rc.tab.gz
186.99 kB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_cpm.tab.gz
235.42 kB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_expressions.txt.gz
498.57 kB
HTSeq-count (CPM)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_HTseq_rc.txt.gz
186.96 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_rc.tab.gz
186.84 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_cpm.tab.gz
234.81 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_expressions.txt.gz
497.95 kB
HTSeq-count (CPM)
STAU1B cell line STAU1-2 KD rep 2_preprocessed_HTseq_rc.txt.gz
187.84 kB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_rc.tab.gz
187.73 kB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_cpm.tab.gz
237.32 kB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_expressions.txt.gz
501.98 kB
HTSeq-count (CPM)
STAU1A cell line STAU1-2 KD rep 1_preprocessed_HTseq_rc.txt.gz
187.03 kB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_rc.tab.gz
186.91 kB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_cpm.tab.gz
235.08 kB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_expressions.txt.gz
498.64 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_HTseq_rc.txt.gz
185.48 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_rc.tab.gz
185.36 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_cpm.tab.gz
231.46 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_expressions.txt.gz
493.95 kB
HTSeq-count (CPM)
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_HTseq_rc.txt.gz
187.67 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_rc.tab.gz
187.56 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_cpm.tab.gz
237.98 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_expressions.txt.gz
502.62 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_HTseq_rc.txt.gz
187.86 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_rc.tab.gz
187.75 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_cpm.tab.gz
237.49 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_expressions.txt.gz
501.58 kB
HTSeq-count (CPM)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_HTseq_rc.txt.gz
186.44 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_rc.tab.gz
186.32 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_cpm.tab.gz
233.38 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_expressions.txt.gz
495.87 kB
HTSeq-count (CPM)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_HTseq_rc.txt.gz
188.00 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_rc.tab.gz
187.89 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_cpm.tab.gz
238.99 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_expressions.txt.gz
503.60 kB
HTSeq-count (CPM)
STAU2 cell line STAU2 KD rep2_preprocessed_HTseq_rc.txt.gz
187.98 kB
STAU2 cell line STAU2 KD rep2_preprocessed_rc.tab.gz
187.86 kB
STAU2 cell line STAU2 KD rep2_preprocessed_cpm.tab.gz
238.85 kB
STAU2 cell line STAU2 KD rep2_preprocessed_expressions.txt.gz
503.22 kB
HTSeq-count (CPM)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_HTseq_rc.txt.gz
187.38 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_rc.tab.gz
187.26 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_cpm.tab.gz
237.25 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_expressions.txt.gz
501.78 kB
HTSeq-count (CPM)
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_HTseq_rc.txt.gz
186.32 kB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_rc.tab.gz
186.21 kB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_cpm.tab.gz
233.34 kB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_expressions.txt.gz
495.04 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_HTseq_rc.txt.gz
188.85 kB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_rc.tab.gz
188.73 kB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_cpm.tab.gz
241.03 kB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_expressions.txt.gz
506.83 kB
HTSeq-count (CPM)
STAU1B cell line STAU1-2 KD rep 1_preprocessed_HTseq_rc.txt.gz
187.43 kB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_rc.tab.gz
187.31 kB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_cpm.tab.gz
235.93 kB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_expressions.txt.gz
499.85 kB
HTSeq-count (CPM)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_HTseq_rc.txt.gz
188.56 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_rc.tab.gz
188.44 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_cpm.tab.gz
240.29 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_expressions.txt.gz
506.20 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_HTseq_rc.txt.gz
187.21 kB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_rc.tab.gz
187.10 kB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_cpm.tab.gz
236.60 kB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_expressions.txt.gz
500.99 kB
HTSeq-count (CPM)
STAU2 cell line STAU2-1 KD rep2_preprocessed_HTseq_rc.txt.gz
186.81 kB
STAU2 cell line STAU2-1 KD rep2_preprocessed_rc.tab.gz
186.70 kB
STAU2 cell line STAU2-1 KD rep2_preprocessed_cpm.tab.gz
235.13 kB
STAU2 cell line STAU2-1 KD rep2_preprocessed_expressions.txt.gz
498.00 kB
DESeq2
de_file.tab.gz
461.74 kB
diffexp_deseq2.tab.gz
689.91 kB
count_matrix.tab.gz
120.01 kB
Gene set
STAU2_cell_line_STAU1-2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_down.tab.gz
671 B
Gene set
STAU2_cell_line_STAU1-2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_all.tab.gz
37.89 kB
Gene set
STAU2_cell_line_STAU1-2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_up.tab.gz
604 B
DESeq2
de_file.tab.gz
425.09 kB
diffexp_deseq2.tab.gz
643.69 kB
count_matrix.tab.gz
117.08 kB
Gene set
STAU2_cell_line_STAU1-2_KD_vs_STAU1-2_KD_+_STAU2_DESeq2_logFC1.0_FDR0.05_all.tab.gz
36.99 kB
Gene set
STAU2_cell_line_STAU1-2_KD_vs_STAU1-2_KD_+_STAU2_DESeq2_logFC1.0_FDR0.05_up.tab.gz
122 B
DESeq2
de_file.tab.gz
451.38 kB
diffexp_deseq2.tab.gz
683.31 kB
count_matrix.tab.gz
123.81 kB
Gene set
STAU1_CM_cell_line_STAU1-2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_up.tab.gz
265 B
Gene set
STAU1_CM_cell_line_STAU1-2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_down.tab.gz
188 B
Gene set
STAU1_CM_cell_line_STAU1-2_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_all.tab.gz
39.06 kB
DESeq2
de_file.tab.gz
457.28 kB
diffexp_deseq2.tab.gz
693.71 kB
count_matrix.tab.gz
124.92 kB
Gene set
STAU2_cell_line_vs_STAU1_CM_cell_line_DESeq2_logFC1.0_FDR0.05_all.tab.gz
39.19 kB
Gene set
STAU2_cell_line_vs_STAU1_CM_cell_line_DESeq2_logFC1.0_FDR0.05_down.tab.gz
238 B
Gene set
STAU2_cell_line_vs_STAU1_CM_cell_line_DESeq2_logFC1.0_FDR0.05_up.tab.gz
228 B
DESeq2
de_file.tab.gz
478.02 kB
diffexp_deseq2.tab.gz
710.61 kB
count_matrix.tab.gz
120.38 kB
Gene set
STAU2_cell_line_STAU1-2_KD_vs_STAU2_cells_DESeq2_logFC1.0_FDR0.05_all.tab.gz
37.88 kB
Gene set
STAU2_cell_line_STAU1-2_KD_vs_STAU2_cells_DESeq2_logFC1.0_FDR0.05_down.tab.gz
1.28 kB
Gene set
STAU2_cell_line_STAU1-2_KD_vs_STAU2_cells_DESeq2_logFC1.0_FDR0.05_up.tab.gz
1.62 kB
DESeq2
de_file.tab.gz
475.13 kB
diffexp_deseq2.tab.gz
715.65 kB
count_matrix.tab.gz
126.79 kB
DESeq2
de_file.tab.gz
437.87 kB
diffexp_deseq2.tab.gz
663.78 kB
count_matrix.tab.gz
121.23 kB
Gene set
STAU1B_cell_line_STAU1-2_KD_vs_STAU1-2_KD_plus_STAU1B_DESeq2_logFC1.0_FDR0.05_up.tab.gz
125 B
Gene set
STAU1B_cell_line_STAU1-2_KD_vs_STAU1-2_KD_plus_STAU1B_DESeq2_logFC1.0_FDR0.05_all.tab.gz
37.91 kB

STAU2_MM _cells_rep1

FASTQ file (single-end)
STAU2_MM _cells_rep1.fastq.gz
301.81 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU2_MM _cells_rep1_fastqc.zip
870.03 kB
BBDuk (single-end)
STAU2_MM _cells_rep1_preprocessed.fastq.gz
294.03 MB
STAU2_MM _cells_rep1_statistics.txt.gz
473 B
fastqc
Directory
STAR
STAU2_MM _cells_rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.24 MB
STAU2_MM _cells_rep1_preprocessed.bam.bai
3.14 MB
STAU2_MM _cells_rep1_preprocessed.bam
269.87 MB
STAU2_MM _cells_rep1_preprocessed_stats.txt
1.81 kB
STAU2_MM _cells_rep1_preprocessed_SJ.out.tab
817.27 kB
HTSeq-count (CPM)
STAU2_MM _cells_rep1_preprocessed_HTseq_rc.txt.gz
189.12 kB
STAU2_MM _cells_rep1_preprocessed_rc.tab.gz
189.00 kB
STAU2_MM _cells_rep1_preprocessed_cpm.tab.gz
240.55 kB
STAU2_MM _cells_rep1_preprocessed_expressions.txt.gz
505.99 kB

STAU1A_MM_cells_rep2

FASTQ file (single-end)
STAU1A_MM_cells_rep2.fastq.gz
525.00 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU1A_MM_cells_rep2_fastqc.zip
863.00 kB
BBDuk (single-end)
STAU1A_MM_cells_rep2_preprocessed.fastq.gz
509.36 MB
STAU1A_MM_cells_rep2_statistics.txt.gz
484 B
fastqc
Directory
STAR
STAU1A_MM_cells_rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.53 MB
STAU1A_MM_cells_rep2_preprocessed.bam.bai
3.55 MB
STAU1A_MM_cells_rep2_preprocessed.bam
469.72 MB
STAU1A_MM_cells_rep2_preprocessed_stats.txt
1.82 kB
STAU1A_MM_cells_rep2_preprocessed_SJ.out.tab
945.44 kB
HTSeq-count (CPM)
STAU1A_MM_cells_rep2_preprocessed_HTseq_rc.txt.gz
191.85 kB
STAU1A_MM_cells_rep2_preprocessed_rc.tab.gz
191.73 kB
STAU1A_MM_cells_rep2_preprocessed_cpm.tab.gz
251.01 kB
STAU1A_MM_cells_rep2_preprocessed_expressions.txt.gz
520.83 kB

STAU1_CM_cells_rep1

FASTQ file (single-end)
STAU1_CM_cells_rep1.fastq.gz
354.27 MB
fastqc
Directory
stderr.txt
1.03 kB
STAU1_CM_cells_rep1_fastqc.zip
862.22 kB
BBDuk (single-end)
STAU1_CM_cells_rep1_preprocessed.fastq.gz
344.40 MB
STAU1_CM_cells_rep1_statistics.txt.gz
487 B
fastqc
Directory
STAR
STAU1_CM_cells_rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.46 MB
STAU1_CM_cells_rep1_preprocessed.bam.bai
3.29 MB
STAU1_CM_cells_rep1_preprocessed.bam
313.89 MB
STAU1_CM_cells_rep1_preprocessed_stats.txt
1.81 kB
STAU1_CM_cells_rep1_preprocessed_SJ.out.tab
923.09 kB
HTSeq-count (CPM)
STAU1_CM_cells_rep1_preprocessed_HTseq_rc.txt.gz
190.60 kB
STAU1_CM_cells_rep1_preprocessed_rc.tab.gz
190.48 kB
STAU1_CM_cells_rep1_preprocessed_cpm.tab.gz
244.45 kB
STAU1_CM_cells_rep1_preprocessed_expressions.txt.gz
511.24 kB

STAU1_CM_cells_rep2

FASTQ file (single-end)
STAU1_CM_cells_rep2.fastq.gz
208.09 MB
fastqc
Directory
stderr.txt
1.03 kB
STAU1_CM_cells_rep2_fastqc.zip
861.41 kB
BBDuk (single-end)
STAU1_CM_cells_rep2_preprocessed.fastq.gz
205.28 MB
STAU1_CM_cells_rep2_statistics.txt.gz
478 B
fastqc
Directory
STAR
STAU1_CM_cells_rep2_preprocessed_unmapped.out.mate1.fastq.gz
1.42 MB
STAU1_CM_cells_rep2_preprocessed.bam.bai
2.82 MB
STAU1_CM_cells_rep2_preprocessed.bam
181.36 MB
STAU1_CM_cells_rep2_preprocessed_stats.txt
1.81 kB
STAU1_CM_cells_rep2_preprocessed_SJ.out.tab
636.69 kB
HTSeq-count (CPM)
STAU1_CM_cells_rep2_preprocessed_HTseq_rc.txt.gz
187.19 kB
STAU1_CM_cells_rep2_preprocessed_rc.tab.gz
187.07 kB
STAU1_CM_cells_rep2_preprocessed_cpm.tab.gz
232.52 kB
STAU1_CM_cells_rep2_preprocessed_expressions.txt.gz
494.17 kB

STAU2_MM_cells_rep2

FASTQ file (single-end)
STAU2_MM_cells_rep2.fastq.gz
266.49 MB
fastqc
Directory
stderr.txt
1.03 kB
STAU2_MM_cells_rep2_fastqc.zip
865.55 kB
BBDuk (single-end)
STAU2_MM_cells_rep2_preprocessed.fastq.gz
262.00 MB
STAU2_MM_cells_rep2_statistics.txt.gz
483 B
fastqc
Directory
STAR
STAU2_MM_cells_rep2_preprocessed_unmapped.out.mate1.fastq.gz
1.87 MB
STAU2_MM_cells_rep2_preprocessed.bam.bai
2.98 MB
STAU2_MM_cells_rep2_preprocessed.bam
235.55 MB
STAU2_MM_cells_rep2_preprocessed_stats.txt
1.81 kB
STAU2_MM_cells_rep2_preprocessed_SJ.out.tab
697.08 kB
HTSeq-count (CPM)
STAU2_MM_cells_rep2_preprocessed_HTseq_rc.txt.gz
187.81 kB
STAU2_MM_cells_rep2_preprocessed_rc.tab.gz
187.69 kB
STAU2_MM_cells_rep2_preprocessed_cpm.tab.gz
236.27 kB
STAU2_MM_cells_rep2_preprocessed_expressions.txt.gz
499.62 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1

FASTQ file (single-end)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1.fastq.gz
286.84 MB
fastqc
Directory
stderr.txt
1.64 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_fastqc.zip
868.09 kB
BBDuk (single-end)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.fastq.gz
280.88 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_statistics.txt.gz
477 B
fastqc
Directory
STAR
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_unmapped.out.mate1.fastq.gz
1.86 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.bam.bai
2.93 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.bam
243.90 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_SJ.out.tab
660.73 kB
HTSeq-count (CPM)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_HTseq_rc.txt.gz
188.41 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_rc.tab.gz
188.29 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_cpm.tab.gz
238.95 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_expressions.txt.gz
503.80 kB

STAU1 CM cell line Ctrl double KD (120 pmoles) rep2

FASTQ file (single-end)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2.fastq.gz
238.05 MB
fastqc
Directory
stderr.txt
1.66 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_fastqc.zip
877.74 kB
BBDuk (single-end)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed.fastq.gz
227.35 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_statistics.txt.gz
447 B
fastqc
Directory
STAR
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.11 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed.bam.bai
2.87 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed.bam
205.57 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_SJ.out.tab
357.27 kB
HTSeq-count (CPM)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
186.13 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_rc.tab.gz
186.01 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_cpm.tab.gz
232.02 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep2_preprocessed_expressions.txt.gz
494.83 kB

STAU1 CM cell line STAU1 KD + STAU1 rescue rep2

FASTQ file (single-end)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2.fastq.gz
236.02 MB
fastqc
Directory
stderr.txt
1.58 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_fastqc.zip
878.29 kB
STAR
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.29 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed.bam.bai
2.70 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed.bam
212.55 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_SJ.out.tab
336.12 kB
BBDuk (single-end)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed.fastq.gz
226.72 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_statistics.txt.gz
468 B
fastqc
Directory
HTSeq-count (CPM)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_HTseq_rc.txt.gz
185.46 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_rc.tab.gz
185.34 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_cpm.tab.gz
230.79 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep2_preprocessed_expressions.txt.gz
492.75 kB

STAU2 cell line Ctrl single KD (60 pmoles) rep1

FASTQ file (single-end)
STAU2 cell line Ctrl single KD (60 pmoles) rep2.fastq.gz
181.56 MB
fastqc
Directory
stderr.txt
1.58 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_fastqc.zip
880.78 kB
BBDuk (single-end)
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.fastq.gz
174.01 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_statistics.txt.gz
421 B
fastqc
Directory
STAR
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
1.39 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam.bai
2.80 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam
168.86 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_SJ.out.tab
508.14 kB
HTSeq-count (CPM)
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
184.17 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_rc.tab.gz
184.06 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_cpm.tab.gz
225.21 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_expressions.txt.gz
484.28 kB

STAU2 cell line STAU2 KD + STAU2 rescue rep1

FASTQ file (single-end)
STAU2 cell line STAU2 KD + STAU2 rescue rep2.fastq.gz
382.67 MB
fastqc
Directory
stderr.txt
1.52 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_fastqc.zip
877.40 kB
BBDuk (single-end)
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.fastq.gz
369.26 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_statistics.txt.gz
497 B
fastqc
Directory
STAR
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.14 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.bam.bai
3.28 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.bam
369.32 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_SJ.out.tab
743.89 kB
HTSeq-count (CPM)
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_HTseq_rc.txt.gz
186.62 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_rc.tab.gz
186.50 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_cpm.tab.gz
234.09 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_expressions.txt.gz
496.57 kB

STAU2 cell line STAU2 KD rep1

FASTQ file (single-end)
STAU2 cell line STAU2 KD rep2.fastq.gz
387.73 MB
fastqc
Directory
stderr.txt
1.23 kB
STAU2 cell line STAU2 KD rep2_fastqc.zip
875.50 kB
HTSeq-count (CPM)
STAU2 cell line STAU2 KD rep2_preprocessed_HTseq_rc.txt.gz
186.61 kB
STAU2 cell line STAU2 KD rep2_preprocessed_rc.tab.gz
186.49 kB
STAU2 cell line STAU2 KD rep2_preprocessed_cpm.tab.gz
233.81 kB
STAU2 cell line STAU2 KD rep2_preprocessed_expressions.txt.gz
496.00 kB
BBDuk (single-end)
STAU2 cell line STAU2 KD rep2_preprocessed.fastq.gz
367.07 MB
STAU2 cell line STAU2 KD rep2_statistics.txt.gz
457 B
fastqc
Directory
STAR
STAU2 cell line STAU2 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.24 MB
STAU2 cell line STAU2 KD rep2_preprocessed.bam.bai
3.47 MB
STAU2 cell line STAU2 KD rep2_preprocessed.bam
370.95 MB
STAU2 cell line STAU2 KD rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2 KD rep2_preprocessed_SJ.out.tab
742.02 kB

STAU2 cell line Ctrl single KD (60 pmoles) rep2

FASTQ file (single-end)
STAU2 cell line Ctrl single KD (60 pmoles) rep2.fastq.gz
270.23 MB
fastqc
Directory
stderr.txt
1.58 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_fastqc.zip
872.13 kB
BBDuk (single-end)
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.fastq.gz
265.60 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_statistics.txt.gz
474 B
fastqc
Directory
STAR
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
1.63 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam.bai
2.81 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam
239.66 MB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_SJ.out.tab
620.23 kB
HTSeq-count (CPM)
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
186.74 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_rc.tab.gz
186.63 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_cpm.tab.gz
233.44 kB
STAU2 cell line Ctrl single KD (60 pmoles) rep2_preprocessed_expressions.txt.gz
496.25 kB

STAU2 cell line Ctrl double KD (180 pmoles) rep2

FASTQ file (single-end)
STAU2 cell line Ctrl double KD (180 pmoles) rep2.fastq.gz
375.34 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_fastqc.zip
873.29 kB
BBDuk (single-end)
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed.fastq.gz
368.52 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_statistics.txt.gz
474 B
fastqc
Directory
STAR
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.31 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed.bam.bai
3.04 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed.bam
326.32 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_SJ.out.tab
753.91 kB
HTSeq-count (CPM)
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
188.87 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_rc.tab.gz
188.75 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_cpm.tab.gz
240.51 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep2_preprocessed_expressions.txt.gz
505.53 kB

STAU2 cell line STAU2 KD rep2

FASTQ file (single-end)
STAU2 cell line STAU2 KD rep2.fastq.gz
463.94 MB
fastqc
Directory
stderr.txt
1.23 kB
STAU2 cell line STAU2 KD rep2_fastqc.zip
867.69 kB
BBDuk (single-end)
STAU2 cell line STAU2 KD rep2_preprocessed.fastq.gz
450.99 MB
STAU2 cell line STAU2 KD rep2_statistics.txt.gz
494 B
fastqc
Directory
STAR
STAU2 cell line STAU2 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.28 MB
STAU2 cell line STAU2 KD rep2_preprocessed.bam.bai
3.36 MB
STAU2 cell line STAU2 KD rep2_preprocessed.bam
424.22 MB
STAU2 cell line STAU2 KD rep2_preprocessed_stats.txt
1.82 kB
STAU2 cell line STAU2 KD rep2_preprocessed_SJ.out.tab
808.03 kB
HTSeq-count (CPM)
STAU2 cell line STAU2 KD rep2_preprocessed_HTseq_rc.txt.gz
187.98 kB
STAU2 cell line STAU2 KD rep2_preprocessed_rc.tab.gz
187.86 kB
STAU2 cell line STAU2 KD rep2_preprocessed_cpm.tab.gz
238.85 kB
STAU2 cell line STAU2 KD rep2_preprocessed_expressions.txt.gz
503.22 kB

STAU1A_MM_cells_rep1

FASTQ file (single-end)
STAU1A_MM_cells_rep1.fastq.gz
339.48 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU1A_MM_cells_rep1_fastqc.zip
867.40 kB
BBDuk (single-end)
STAU1A_MM_cells_rep1_preprocessed.fastq.gz
328.19 MB
STAU1A_MM_cells_rep1_statistics.txt.gz
497 B
fastqc
Directory
STAR
STAU1A_MM_cells_rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.47 MB
STAU1A_MM_cells_rep1_preprocessed.bam.bai
3.26 MB
STAU1A_MM_cells_rep1_preprocessed.bam
301.70 MB
STAU1A_MM_cells_rep1_preprocessed_stats.txt
1.81 kB
STAU1A_MM_cells_rep1_preprocessed_SJ.out.tab
813.88 kB
HTSeq-count (CPM)
STAU1A_MM_cells_rep1_preprocessed_HTseq_rc.txt.gz
189.63 kB
STAU1A_MM_cells_rep1_preprocessed_rc.tab.gz
189.51 kB
STAU1A_MM_cells_rep1_preprocessed_cpm.tab.gz
242.67 kB
STAU1A_MM_cells_rep1_preprocessed_expressions.txt.gz
508.69 kB

STAU1B_MM_cells_rep1

FASTQ file (single-end)
STAU1B_MM_cells_rep1.fastq.gz
309.89 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU1B_MM_cells_rep1_fastqc.zip
860.09 kB
BBDuk (single-end)
STAU1B_MM_cells_rep1_preprocessed.fastq.gz
303.05 MB
STAU1B_MM_cells_rep1_statistics.txt.gz
479 B
fastqc
Directory
STAR
STAU1B_MM_cells_rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.23 MB
STAU1B_MM_cells_rep1_preprocessed.bam.bai
3.10 MB
STAU1B_MM_cells_rep1_preprocessed.bam
281.64 MB
STAU1B_MM_cells_rep1_preprocessed_stats.txt
1.81 kB
STAU1B_MM_cells_rep1_preprocessed_SJ.out.tab
808.77 kB
HTSeq-count (CPM)
STAU1B_MM_cells_rep1_preprocessed_HTseq_rc.txt.gz
189.13 kB
STAU1B_MM_cells_rep1_preprocessed_rc.tab.gz
189.02 kB
STAU1B_MM_cells_rep1_preprocessed_cpm.tab.gz
239.61 kB
STAU1B_MM_cells_rep1_preprocessed_expressions.txt.gz
504.63 kB

STAU1 CM cell line STAU1 KD + STAU1 rescue rep1

FASTQ file (single-end)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1.fastq.gz
389.30 MB
fastqc
Directory
stderr.txt
1.58 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_fastqc.zip
872.69 kB
BBDuk (single-end)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed.fastq.gz
382.49 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_statistics.txt.gz
487 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.75 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed.bam.bai
2.97 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed.bam
334.12 MB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_SJ.out.tab
761.12 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_HTseq_rc.txt.gz
190.45 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_rc.tab.gz
190.33 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_cpm.tab.gz
245.41 kB
STAU1 CM cell line STAU1 KD + STAU1 rescue rep1_preprocessed_expressions.txt.gz
512.62 kB

STAU1 CM cell line STAU1 KD rep2

FASTQ file (single-end)
stderr.txt
1.28 kB
STAU1 CM cell line STAU1 KD rep2.fastq.gz
234.42 MB
fastqc
Directory
STAU1 CM cell line STAU1 KD rep2_fastqc.zip
875.89 kB
BBDuk (single-end)
STAU1 CM cell line STAU1 KD rep2_preprocessed.fastq.gz
221.50 MB
STAU1 CM cell line STAU1 KD rep2_statistics.txt.gz
445 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.20 MB
STAU1 CM cell line STAU1 KD rep2_preprocessed.bam.bai
2.85 MB
STAU1 CM cell line STAU1 KD rep2_preprocessed.bam
205.44 MB
STAU1 CM cell line STAU1 KD rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1 KD rep2_preprocessed_SJ.out.tab
334.07 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1 KD rep2_preprocessed_HTseq_rc.txt.gz
185.82 kB
STAU1 CM cell line STAU1 KD rep2_preprocessed_rc.tab.gz
185.70 kB
STAU1 CM cell line STAU1 KD rep2_preprocessed_cpm.tab.gz
232.12 kB
STAU1 CM cell line STAU1 KD rep2_preprocessed_expressions.txt.gz
494.62 kB

STAU1 CM cell line STAU1 KD rep1

FASTQ file (single-end)
STAU1 CM cell line STAU1 KD rep1.fastq.gz
300.42 MB
fastqc
Directory
stderr.txt
1.28 kB
STAU1 CM cell line STAU1 KD rep1_fastqc.zip
876.83 kB
BBDuk (single-end)
STAU1 CM cell line STAU1 KD rep1_preprocessed.fastq.gz
291.08 MB
STAU1 CM cell line STAU1 KD rep1_statistics.txt.gz
470 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1 KD rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.12 MB
STAU1 CM cell line STAU1 KD rep1_preprocessed.bam.bai
2.95 MB
STAU1 CM cell line STAU1 KD rep1_preprocessed.bam
256.05 MB
STAU1 CM cell line STAU1 KD rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1 KD rep1_preprocessed_SJ.out.tab
657.03 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1 KD rep1_preprocessed_HTseq_rc.txt.gz
188.59 kB
STAU1 CM cell line STAU1 KD rep1_preprocessed_rc.tab.gz
188.47 kB
STAU1 CM cell line STAU1 KD rep1_preprocessed_cpm.tab.gz
239.09 kB
STAU1 CM cell line STAU1 KD rep1_preprocessed_expressions.txt.gz
504.58 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2

FASTQ file (single-end)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2.fastq.gz
331.75 MB
fastqc
Directory
stderr.txt
1.64 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_fastqc.zip
867.40 kB
BBDuk (single-end)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.fastq.gz
319.68 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_statistics.txt.gz
446 B
fastqc
Directory
STAR
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.75 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam.bai
3.10 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam
296.02 MB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_SJ.out.tab
434.14 kB
HTSeq-count (CPM)
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_HTseq_rc.txt.gz
188.14 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_rc.tab.gz
188.02 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_cpm.tab.gz
239.19 kB
STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_expressions.txt.gz
504.79 kB

STAU2 cell line Ctrl double KD (180 pmoles) rep1

FASTQ file (single-end)
STAU2 cell line Ctrl double KD (180 pmoles) rep1.fastq.gz
297.48 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_fastqc.zip
882.76 kB
BBDuk (single-end)
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed.fastq.gz
285.40 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_statistics.txt.gz
465 B
fastqc
Directory
STAR
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.17 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed.bam.bai
3.14 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed.bam
271.00 MB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_stats.txt
1.81 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_SJ.out.tab
682.29 kB
HTSeq-count (CPM)
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_HTseq_rc.txt.gz
187.36 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_rc.tab.gz
187.24 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_cpm.tab.gz
235.12 kB
STAU2 cell line Ctrl double KD (180 pmoles) rep1_preprocessed_expressions.txt.gz
498.01 kB

STAU1 CM cell line STAU1-2 KD rep2

FASTQ file (single-end)
STAU1 CM cell line STAU1-2 KD rep2.fastq.gz
371.39 MB
fastqc
Directory
stderr.txt
1.32 kB
STAU1 CM cell line STAU1-2 KD rep2_fastqc.zip
876.34 kB
BBDuk (single-end)
STAU1 CM cell line STAU1-2 KD rep2_preprocessed.fastq.gz
356.49 MB
STAU1 CM cell line STAU1-2 KD rep2_statistics.txt.gz
463 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.51 MB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed.bam.bai
3.15 MB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed.bam
348.72 MB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_SJ.out.tab
447.98 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_HTseq_rc.txt.gz
187.21 kB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_rc.tab.gz
187.10 kB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_cpm.tab.gz
236.60 kB
STAU1 CM cell line STAU1-2 KD rep2_preprocessed_expressions.txt.gz
500.99 kB

STAU1 CM cell line STAU1-2 KD rep1

FASTQ file (single-end)
STAU1 CM cell line STAU1-2 KD rep1.fastq.gz
393.07 MB
fastqc
Directory
stderr.txt
1.32 kB
STAU1 CM cell line STAU1-2 KD rep1_fastqc.zip
866.93 kB
BBDuk (single-end)
STAU1 CM cell line STAU1-2 KD rep1_preprocessed.fastq.gz
384.36 MB
STAU1 CM cell line STAU1-2 KD rep1_statistics.txt.gz
459 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.88 MB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed.bam.bai
3.08 MB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed.bam
348.62 MB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_SJ.out.tab
761.44 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_HTseq_rc.txt.gz
188.85 kB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_rc.tab.gz
188.73 kB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_cpm.tab.gz
241.03 kB
STAU1 CM cell line STAU1-2 KD rep1_preprocessed_expressions.txt.gz
506.83 kB

STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1

FASTQ file (single-end)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1.fastq.gz
334.57 MB
fastqc
Directory
stderr.txt
1.62 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_fastqc.zip
865.99 kB
BBDuk (single-end)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed.fastq.gz
327.10 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_statistics.txt.gz
472 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.75 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed.bam.bai
3.00 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed.bam
295.07 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_SJ.out.tab
711.19 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_HTseq_rc.txt.gz
187.86 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_rc.tab.gz
187.75 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_cpm.tab.gz
237.49 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep1_preprocessed_expressions.txt.gz
501.58 kB

STAU2 cell line STAU2-STAU1 KD rep1

FASTQ file (single-end)
STAU2 cell line STAU2-STAU1 KD rep1.fastq.gz
360.68 MB
fastqc
Directory
stderr.txt
1.34 kB
STAU2 cell line STAU2-STAU1 KD rep1_fastqc.zip
879.27 kB
BBDuk (single-end)
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed.fastq.gz
345.85 MB
STAU2 cell line STAU2-STAU1 KD rep1_statistics.txt.gz
473 B
fastqc
Directory
STAR
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_unmapped.out.mate1.fastq.gz
2.76 MB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed.bam.bai
3.21 MB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed.bam
345.77 MB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_SJ.out.tab
723.14 kB
HTSeq-count (CPM)
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_HTseq_rc.txt.gz
186.32 kB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_rc.tab.gz
186.21 kB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_cpm.tab.gz
233.34 kB
STAU2 cell line STAU2-STAU1 KD rep1_preprocessed_expressions.txt.gz
495.04 kB

STAU2 cell line STAU2-1 KD rep2

FASTQ file (single-end)
STAU2 cell line STAU2-1 KD rep2.fastq.gz
377.86 MB
fastqc
Directory
stderr.txt
1.26 kB
STAU2 cell line STAU2-1 KD rep2_fastqc.zip
871.78 kB
BBDuk (single-end)
STAU2 cell line STAU2-1 KD rep2_preprocessed.fastq.gz
369.32 MB
STAU2 cell line STAU2-1 KD rep2_statistics.txt.gz
469 B
fastqc
Directory
STAR
STAU2 cell line STAU2-1 KD rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.57 MB
STAU2 cell line STAU2-1 KD rep2_preprocessed.bam.bai
3.04 MB
STAU2 cell line STAU2-1 KD rep2_preprocessed.bam
345.70 MB
STAU2 cell line STAU2-1 KD rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2-1 KD rep2_preprocessed_SJ.out.tab
733.35 kB
HTSeq-count (CPM)
STAU2 cell line STAU2-1 KD rep2_preprocessed_HTseq_rc.txt.gz
186.81 kB
STAU2 cell line STAU2-1 KD rep2_preprocessed_rc.tab.gz
186.70 kB
STAU2 cell line STAU2-1 KD rep2_preprocessed_cpm.tab.gz
235.13 kB
STAU2 cell line STAU2-1 KD rep2_preprocessed_expressions.txt.gz
498.00 kB

STAU1B_MM_cells_rep2

FASTQ file (single-end)
STAU1B_MM_cells_rep2.fastq.gz
297.00 MB
fastqc
Directory
stderr.txt
1.05 kB
STAU1B_MM_cells_rep2_fastqc.zip
853.59 kB
BBDuk (single-end)
STAU1B_MM_cells_rep2_preprocessed.fastq.gz
293.51 MB
STAU1B_MM_cells_rep2_statistics.txt.gz
480 B
fastqc
Directory
STAR
STAU1B_MM_cells_rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.05 MB
STAU1B_MM_cells_rep2_preprocessed.bam.bai
2.96 MB
STAU1B_MM_cells_rep2_preprocessed.bam
266.95 MB
STAU1B_MM_cells_rep2_preprocessed_stats.txt
1.81 kB
STAU1B_MM_cells_rep2_preprocessed_SJ.out.tab
719.02 kB
HTSeq-count (CPM)
STAU1B_MM_cells_rep2_preprocessed_HTseq_rc.txt.gz
188.44 kB
STAU1B_MM_cells_rep2_preprocessed_rc.tab.gz
188.32 kB
STAU1B_MM_cells_rep2_preprocessed_cpm.tab.gz
237.35 kB
STAU1B_MM_cells_rep2_preprocessed_expressions.txt.gz
501.44 kB

STAU1 CM cell line Ctrl double KD (120 pmoles) rep1

FASTQ file (single-end)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1.fastq.gz
209.05 MB
fastqc
Directory
stderr.txt
1.66 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_fastqc.zip
881.71 kB
BBDuk (single-end)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed.fastq.gz
203.55 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_statistics.txt.gz
452 B
fastqc
Directory
STAR
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_unmapped.out.mate1.fastq.gz
1.50 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed.bam.bai
2.73 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed.bam
176.28 MB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_SJ.out.tab
551.81 kB
HTSeq-count (CPM)
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_HTseq_rc.txt.gz
186.53 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_rc.tab.gz
186.42 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_cpm.tab.gz
232.36 kB
STAU1 CM cell line Ctrl double KD (120 pmoles) rep1_preprocessed_expressions.txt.gz
494.54 kB

STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2

FASTQ file (single-end)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2.fastq.gz
376.82 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_fastqc.zip
877.66 kB
BBDuk (single-end)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.fastq.gz
360.24 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_statistics.txt.gz
489 B
fastqc
Directory
STAR
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_unmapped.out.mate1.fastq.gz
3.49 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.bam.bai
3.36 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.bam
356.71 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_stats.txt
1.81 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_SJ.out.tab
647.54 kB
HTSeq-count (CPM)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_HTseq_rc.txt.gz
188.43 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_rc.tab.gz
188.31 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_cpm.tab.gz
238.95 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_expressions.txt.gz
504.36 kB

STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1

FASTQ file (single-end)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1.fastq.gz
291.01 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_fastqc.zip
860.94 kB
BBDuk (single-end)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.fastq.gz
281.98 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_statistics.txt.gz
472 B
fastqc
Directory
STAR
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_unmapped.out.mate1.fastq.gz
2.49 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.bam.bai
3.06 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.bam
258.34 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_stats.txt
1.81 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_SJ.out.tab
708.65 kB
HTSeq-count (CPM)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_HTseq_rc.txt.gz
186.96 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_rc.tab.gz
186.84 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_cpm.tab.gz
234.81 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_expressions.txt.gz
497.95 kB

STAU1A cell line STAU1-2 KD rep 1

FASTQ file (single-end)
STAU1A cell line STAU1-2 KD rep 1.fastq.gz
322.48 MB
fastqc
Directory
stderr.txt
1.30 kB
STAU1A cell line STAU1-2 KD rep 1_fastqc.zip
867.52 kB
BBDuk (single-end)
STAU1A cell line STAU1-2 KD rep 1_preprocessed.fastq.gz
313.36 MB
STAU1A cell line STAU1-2 KD rep 1_statistics.txt.gz
471 B
fastqc
Directory
STAR
STAU1A cell line STAU1-2 KD rep 1_preprocessed_unmapped.out.mate1.fastq.gz
2.47 MB
STAU1A cell line STAU1-2 KD rep 1_preprocessed.bam.bai
3.11 MB
STAU1A cell line STAU1-2 KD rep 1_preprocessed.bam
294.62 MB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_stats.txt
1.81 kB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_SJ.out.tab
716.32 kB
HTSeq-count (CPM)
STAU1A cell line STAU1-2 KD rep 1_preprocessed_HTseq_rc.txt.gz
187.03 kB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_rc.tab.gz
186.91 kB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_cpm.tab.gz
235.08 kB
STAU1A cell line STAU1-2 KD rep 1_preprocessed_expressions.txt.gz
498.64 kB

STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1

FASTQ file (single-end)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1.fastq.gz
373.13 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_fastqc.zip
873.95 kB
STAR
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_unmapped.out.mate1.fastq.gz
3.18 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.bam.bai
3.34 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.bam
337.35 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_stats.txt
1.81 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_SJ.out.tab
763.92 kB
BBDuk (single-end)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed.fastq.gz
358.36 MB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_statistics.txt.gz
463 B
fastqc
Directory
HTSeq-count (CPM)
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_HTseq_rc.txt.gz
188.00 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_rc.tab.gz
187.89 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_cpm.tab.gz
238.99 kB
STAU1A cell line STAU1-2 KD + STAU1 rescue rep 1_preprocessed_expressions.txt.gz
503.60 kB

STAU2 cell line STAU2 KD + STAU2 rescue rep2

FASTQ file (single-end)
STAU2 cell line STAU2 KD + STAU2 rescue rep2.fastq.gz
464.88 MB
fastqc
Directory
stderr.txt
1.52 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_fastqc.zip
870.20 kB
BBDuk (single-end)
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.fastq.gz
457.22 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_statistics.txt.gz
478 B
fastqc
Directory
STAR
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.22 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.bam.bai
3.17 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed.bam
434.03 MB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_SJ.out.tab
803.10 kB
HTSeq-count (CPM)
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_HTseq_rc.txt.gz
187.67 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_rc.tab.gz
187.56 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_cpm.tab.gz
237.98 kB
STAU2 cell line STAU2 KD + STAU2 rescue rep2_preprocessed_expressions.txt.gz
502.62 kB

STAU1B cell line STAU1-2 KD rep 2

BBDuk (single-end)
fastqc
Directory
STAU1B cell line STAU1-2 KD rep 2_preprocessed.fastq.gz
354.60 MB
STAU1B cell line STAU1-2 KD rep 2_statistics.txt.gz
487 B
FASTQ file (single-end)
STAU1B cell line STAU1-2 KD rep 2.fastq.gz
368.19 MB
fastqc
Directory
stderr.txt
1.30 kB
STAU1B cell line STAU1-2 KD rep 2_fastqc.zip
876.42 kB
STAR
STAU1B cell line STAU1-2 KD rep 2_preprocessed_unmapped.out.mate1.fastq.gz
3.48 MB
STAU1B cell line STAU1-2 KD rep 2_preprocessed.bam.bai
3.21 MB
STAU1B cell line STAU1-2 KD rep 2_preprocessed.bam
357.38 MB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_stats.txt
1.81 kB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_SJ.out.tab
674.34 kB
HTSeq-count (CPM)
STAU1B cell line STAU1-2 KD rep 2_preprocessed_HTseq_rc.txt.gz
187.84 kB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_rc.tab.gz
187.73 kB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_cpm.tab.gz
237.32 kB
STAU1B cell line STAU1-2 KD rep 2_preprocessed_expressions.txt.gz
501.98 kB

STAU1B cell line STAU1-2 KD rep 1

FASTQ file (single-end)
STAU1B cell line STAU1-2 KD rep 1.fastq.gz
315.92 MB
fastqc
Directory
stderr.txt
1.30 kB
STAU1B cell line STAU1-2 KD rep 1_fastqc.zip
862.62 kB
BBDuk (single-end)
STAU1B cell line STAU1-2 KD rep 1_preprocessed.fastq.gz
307.24 MB
STAU1B cell line STAU1-2 KD rep 1_statistics.txt.gz
490 B
fastqc
Directory
STAR
STAU1B cell line STAU1-2 KD rep 1_preprocessed_unmapped.out.mate1.fastq.gz
2.63 MB
STAU1B cell line STAU1-2 KD rep 1_preprocessed.bam.bai
3.03 MB
STAU1B cell line STAU1-2 KD rep 1_preprocessed.bam
286.20 MB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_stats.txt
1.81 kB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_SJ.out.tab
712.09 kB
HTSeq-count (CPM)
STAU1B cell line STAU1-2 KD rep 1_preprocessed_HTseq_rc.txt.gz
187.43 kB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_rc.tab.gz
187.31 kB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_cpm.tab.gz
235.93 kB
STAU1B cell line STAU1-2 KD rep 1_preprocessed_expressions.txt.gz
499.85 kB

STAU1A cell line STAU1-2 KD rep 2

FASTQ file (single-end)
STAU1A cell line STAU1-2 KD rep 2.fastq.gz
357.20 MB
fastqc
Directory
stderr.txt
1.30 kB
STAU1A cell line STAU1-2 KD rep 2_fastqc.zip
875.16 kB
BBDuk (single-end)
STAU1A cell line STAU1-2 KD rep 2_preprocessed.fastq.gz
344.09 MB
STAU1A cell line STAU1-2 KD rep 2_statistics.txt.gz
471 B
fastqc
Directory
STAR
STAU1A cell line STAU1-2 KD rep 2_preprocessed_unmapped.out.mate1.fastq.gz
3.16 MB
STAU1A cell line STAU1-2 KD rep 2_preprocessed.bam.bai
3.24 MB
STAU1A cell line STAU1-2 KD rep 2_preprocessed.bam
349.88 MB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_stats.txt
1.81 kB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_SJ.out.tab
661.40 kB
HTSeq-count (CPM)
STAU1A cell line STAU1-2 KD rep 2_preprocessed_HTseq_rc.txt.gz
187.11 kB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_rc.tab.gz
186.99 kB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_cpm.tab.gz
235.42 kB
STAU1A cell line STAU1-2 KD rep 2_preprocessed_expressions.txt.gz
498.57 kB

STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2

FASTQ file (single-end)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2.fastq.gz
377.56 MB
fastqc
Directory
stderr.txt
1.60 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_fastqc.zip
880.44 kB
BBDuk (single-end)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.fastq.gz
362.18 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_statistics.txt.gz
486 B
fastqc
Directory
STAR
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_unmapped.out.mate1.fastq.gz
3.62 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.bam.bai
3.31 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed.bam
351.80 MB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_stats.txt
1.81 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_SJ.out.tab
705.72 kB
HTSeq-count (CPM)
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_HTseq_rc.txt.gz
188.56 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_rc.tab.gz
188.44 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_cpm.tab.gz
240.29 kB
STAU1B cell line STAU1-2 KD + STAU1 rescue rep 2_preprocessed_expressions.txt.gz
506.20 kB

STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2

FASTQ file (single-end)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2.fastq.gz
286.59 MB
fastqc
Directory
stderr.txt
1.62 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_fastqc.zip
875.28 kB
BBDuk (single-end)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed.fastq.gz
274.12 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_statistics.txt.gz
455 B
fastqc
Directory
STAR
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
3.01 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed.bam.bai
2.96 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed.bam
265.16 MB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_SJ.out.tab
382.50 kB
HTSeq-count (CPM)
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_HTseq_rc.txt.gz
185.48 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_rc.tab.gz
185.36 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_cpm.tab.gz
231.46 kB
STAU1 CM cell line STAU1-2 KD + STAU1 rescue rep2_preprocessed_expressions.txt.gz
493.95 kB

STAU2 cell line STAU2-1 KD + STAU2 rescue rep1

FASTQ file (single-end)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1.fastq.gz
383.83 MB
fastqc
Directory
stderr.txt
1.56 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_fastqc.zip
877.27 kB
BBDuk (single-end)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed.fastq.gz
368.97 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_statistics.txt.gz
473 B
fastqc
Directory
STAR
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_unmapped.out.mate1.fastq.gz
3.11 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed.bam.bai
3.26 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed.bam
366.04 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_SJ.out.tab
740.58 kB
HTSeq-count (CPM)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_HTseq_rc.txt.gz
186.44 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_rc.tab.gz
186.32 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_cpm.tab.gz
233.38 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep1_preprocessed_expressions.txt.gz
495.87 kB

STAU2 cell line STAU2-1 KD + STAU2 rescue rep2

FASTQ file (single-end)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2.fastq.gz
423.78 MB
fastqc
Directory
stderr.txt
1.56 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_fastqc.zip
868.64 kB
BBDuk (single-end)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed.fastq.gz
415.65 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_statistics.txt.gz
464 B
fastqc
Directory
STAR
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_unmapped.out.mate1.fastq.gz
2.94 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed.bam.bai
3.12 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed.bam
382.48 MB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_stats.txt
1.81 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_SJ.out.tab
766.24 kB
HTSeq-count (CPM)
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_HTseq_rc.txt.gz
187.38 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_rc.tab.gz
187.26 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_cpm.tab.gz
237.25 kB
STAU2 cell line STAU2-1 KD + STAU2 rescue rep2_preprocessed_expressions.txt.gz
501.78 kB