SKmel STAU1 KD

No Sample

DESeq2

count_matrix.tab.gz

127.86 kB

de_file.tab.gz

529.03 kB

diffexp_deseq2.tab.gz

767.37 kB

FASTQ file (single-end)

MIL455A37_S51_L004_R1_001.fastq.gz

121.35 MB

fastqc

Directory

stderr.txt

1.15 kB

MIL455A37_S51_L004_R1_001_fastqc.zip

407.18 kB

FASTQ file (single-end)

MIL455A38_S52_L004_R1_001.fastq.gz

123.74 MB

fastqc

Directory

stderr.txt

1.15 kB

MIL455A38_S52_L004_R1_001_fastqc.zip

404.97 kB

FASTQ file (single-end)

MIL455A39_S53_L004_R1_001.fastq.gz

283.87 MB

fastqc

Directory

stderr.txt

1.15 kB

MIL455A39_S53_L004_R1_001_fastqc.zip

403.54 kB

FASTQ file (single-end)

MIL455A40_S54_L004_R1_001.fastq.gz

297.31 MB

fastqc

Directory

stderr.txt

1.15 kB

MIL455A40_S54_L004_R1_001_fastqc.zip

395.97 kB

BBDuk (single-end)

MIL455A37_S51_L004_R1_001_preprocessed.fastq.gz

94.29 MB

MIL455A37_S51_L004_R1_001_statistics.txt.gz

398 B

fastqc

Directory

BBDuk (single-end)

MIL455A38_S52_L004_R1_001_preprocessed.fastq.gz

99.40 MB

MIL455A38_S52_L004_R1_001_statistics.txt.gz

413 B

fastqc

Directory

BBDuk (single-end)

MIL455A40_S54_L004_R1_001_preprocessed.fastq.gz

237.56 MB

MIL455A40_S54_L004_R1_001_statistics.txt.gz

463 B

fastqc

Directory

BBDuk (single-end)

MIL455A39_S53_L004_R1_001_preprocessed.fastq.gz

224.14 MB

MIL455A39_S53_L004_R1_001_statistics.txt.gz

450 B

fastqc

Directory

STAR

MIL455A39_S53_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.35 MB

MIL455A39_S53_L004_R1_001_preprocessed.bam.bai

3.76 MB

MIL455A39_S53_L004_R1_001_preprocessed.bam

407.29 MB

MIL455A39_S53_L004_R1_001_preprocessed_stats.txt

1.81 kB

MIL455A39_S53_L004_R1_001_preprocessed_SJ.out.tab

1.03 MB

STAR

MIL455A37_S51_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

2.51 MB

MIL455A37_S51_L004_R1_001_preprocessed.bam.bai

3.26 MB

MIL455A37_S51_L004_R1_001_preprocessed.bam

163.64 MB

MIL455A37_S51_L004_R1_001_preprocessed_stats.txt

1.81 kB

MIL455A37_S51_L004_R1_001_preprocessed_SJ.out.tab

631.51 kB

STAR

MIL455A40_S54_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.59 MB

MIL455A40_S54_L004_R1_001_preprocessed.bam.bai

3.80 MB

MIL455A40_S54_L004_R1_001_preprocessed.bam

411.47 MB

MIL455A40_S54_L004_R1_001_preprocessed_stats.txt

1.81 kB

MIL455A40_S54_L004_R1_001_preprocessed_SJ.out.tab

1.12 MB

STAR

MIL455A38_S52_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

2.32 MB

MIL455A38_S52_L004_R1_001_preprocessed.bam.bai

3.16 MB

MIL455A38_S52_L004_R1_001_preprocessed.bam

168.44 MB

MIL455A38_S52_L004_R1_001_preprocessed_stats.txt

1.81 kB

MIL455A38_S52_L004_R1_001_preprocessed_SJ.out.tab

648.24 kB

HTSeq-count (CPM)

MIL455A37_S51_L004_R1_001_preprocessed_HTseq_rc.txt.gz

185.69 kB

MIL455A37_S51_L004_R1_001_preprocessed_rc.tab.gz

185.57 kB

MIL455A37_S51_L004_R1_001_preprocessed_cpm.tab.gz

227.88 kB

MIL455A37_S51_L004_R1_001_preprocessed_expressions.txt.gz

488.81 kB

HTSeq-count (CPM)

MIL455A38_S52_L004_R1_001_preprocessed_HTseq_rc.txt.gz

185.92 kB

MIL455A38_S52_L004_R1_001_preprocessed_rc.tab.gz

185.81 kB

MIL455A38_S52_L004_R1_001_preprocessed_cpm.tab.gz

228.57 kB

MIL455A38_S52_L004_R1_001_preprocessed_expressions.txt.gz

489.57 kB

HTSeq-count (CPM)

MIL455A40_S54_L004_R1_001_preprocessed_HTseq_rc.txt.gz

191.96 kB

MIL455A40_S54_L004_R1_001_preprocessed_rc.tab.gz

191.84 kB

MIL455A40_S54_L004_R1_001_preprocessed_cpm.tab.gz

249.86 kB

MIL455A40_S54_L004_R1_001_preprocessed_expressions.txt.gz

519.87 kB

HTSeq-count (CPM)

MIL455A39_S53_L004_R1_001_preprocessed_HTseq_rc.txt.gz

191.06 kB

MIL455A39_S53_L004_R1_001_preprocessed_rc.tab.gz

190.94 kB

MIL455A39_S53_L004_R1_001_preprocessed_cpm.tab.gz

248.53 kB

MIL455A39_S53_L004_R1_001_preprocessed_expressions.txt.gz

516.79 kB

DESeq2

de_file.tab.gz

513.67 kB

diffexp_deseq2.tab.gz

745.46 kB

count_matrix.tab.gz

123.48 kB

Gene set

Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_all.tab.gz

39.37 kB

Gene set

Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_up.tab.gz

6.92 kB

Gene set

Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_down.tab.gz

7.07 kB

STAR

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_unmapped.out.mate1.fastq.gz

1.86 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.bam.bai

2.93 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.bam

243.90 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_stats.txt

1.81 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_SJ.out.tab

660.73 kB

BBDuk (single-end)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.fastq.gz

280.88 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_statistics.txt.gz

477 B

fastqc

Directory

FASTQ file (single-end)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1.fastq.gz

286.84 MB

fastqc

Directory

stderr.txt

1.64 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_fastqc.zip

868.09 kB

HTSeq-count (CPM)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_HTseq_rc.txt.gz

188.41 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_rc.tab.gz

188.29 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_cpm.tab.gz

238.95 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_expressions.txt.gz

503.80 kB

FASTQ file (single-end)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2.fastq.gz

331.75 MB

fastqc

Directory

stderr.txt

1.64 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_fastqc.zip

867.40 kB

BBDuk (single-end)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.fastq.gz

319.68 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_statistics.txt.gz

446 B

fastqc

Directory

STAR

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz

2.75 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam.bai

3.10 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam

296.02 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_stats.txt

1.81 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_SJ.out.tab

434.14 kB

HTSeq-count (CPM)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_HTseq_rc.txt.gz

188.14 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_rc.tab.gz

188.02 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_cpm.tab.gz

239.19 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_expressions.txt.gz

504.79 kB

Gene set

SKmel_vs_HEK_DESeq2_logFC1.0_FDR0.05_all.tab.gz

40.38 kB

Gene set

SKmel_vs_HEK_DESeq2_logFC1.0_FDR0.05_up.tab.gz

7.39 kB

Gene set

SKmel_vs_HEK_DESeq2_logFC1.0_FDR0.05_down.tab.gz

7.47 kB

DESeq2

de_file.tab.gz

417.10 kB

diffexp_deseq2.tab.gz

633.01 kB

count_matrix.tab.gz

118.05 kB

Gene set

SKmel_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_down.tab.gz

91 B

Gene set

SKmel_KD_vs_Ctrl_DESeq2_logFC1.0_FDR0.05_all.tab.gz

36.54 kB

SK mel Ctrl tot 2

FASTQ file (single-end)

MIL455A39_S53_L004_R1_001.fastq.gz

283.87 MB

fastqc

Directory

stderr.txt

1.15 kB

MIL455A39_S53_L004_R1_001_fastqc.zip

403.54 kB

BBDuk (single-end)

MIL455A39_S53_L004_R1_001_preprocessed.fastq.gz

224.14 MB

MIL455A39_S53_L004_R1_001_statistics.txt.gz

450 B

fastqc

Directory

STAR

MIL455A39_S53_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.35 MB

MIL455A39_S53_L004_R1_001_preprocessed.bam.bai

3.76 MB

MIL455A39_S53_L004_R1_001_preprocessed.bam

407.29 MB

MIL455A39_S53_L004_R1_001_preprocessed_stats.txt

1.81 kB

MIL455A39_S53_L004_R1_001_preprocessed_SJ.out.tab

1.03 MB

HTSeq-count (CPM)

MIL455A39_S53_L004_R1_001_preprocessed_HTseq_rc.txt.gz

191.06 kB

MIL455A39_S53_L004_R1_001_preprocessed_rc.tab.gz

190.94 kB

MIL455A39_S53_L004_R1_001_preprocessed_cpm.tab.gz

248.53 kB

MIL455A39_S53_L004_R1_001_preprocessed_expressions.txt.gz

516.79 kB

SK mel STAU1 siRNA tot 1

FASTQ file (single-end)

MIL455A38_S52_L004_R1_001.fastq.gz

123.74 MB

fastqc

Directory

stderr.txt

1.15 kB

MIL455A38_S52_L004_R1_001_fastqc.zip

404.97 kB

BBDuk (single-end)

MIL455A38_S52_L004_R1_001_preprocessed.fastq.gz

99.40 MB

MIL455A38_S52_L004_R1_001_statistics.txt.gz

413 B

fastqc

Directory

STAR

MIL455A38_S52_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

2.32 MB

MIL455A38_S52_L004_R1_001_preprocessed.bam.bai

3.16 MB

MIL455A38_S52_L004_R1_001_preprocessed.bam

168.44 MB

MIL455A38_S52_L004_R1_001_preprocessed_stats.txt

1.81 kB

MIL455A38_S52_L004_R1_001_preprocessed_SJ.out.tab

648.24 kB

HTSeq-count (CPM)

MIL455A38_S52_L004_R1_001_preprocessed_HTseq_rc.txt.gz

185.92 kB

MIL455A38_S52_L004_R1_001_preprocessed_rc.tab.gz

185.81 kB

MIL455A38_S52_L004_R1_001_preprocessed_cpm.tab.gz

228.57 kB

MIL455A38_S52_L004_R1_001_preprocessed_expressions.txt.gz

489.57 kB

SK mel Ctrl tot 1

FASTQ file (single-end)

MIL455A37_S51_L004_R1_001.fastq.gz

121.35 MB

fastqc

Directory

stderr.txt

1.15 kB

MIL455A37_S51_L004_R1_001_fastqc.zip

407.18 kB

BBDuk (single-end)

MIL455A37_S51_L004_R1_001_preprocessed.fastq.gz

94.29 MB

MIL455A37_S51_L004_R1_001_statistics.txt.gz

398 B

fastqc

Directory

STAR

MIL455A37_S51_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

2.51 MB

MIL455A37_S51_L004_R1_001_preprocessed.bam.bai

3.26 MB

MIL455A37_S51_L004_R1_001_preprocessed.bam

163.64 MB

MIL455A37_S51_L004_R1_001_preprocessed_stats.txt

1.81 kB

MIL455A37_S51_L004_R1_001_preprocessed_SJ.out.tab

631.51 kB

HTSeq-count (CPM)

MIL455A37_S51_L004_R1_001_preprocessed_HTseq_rc.txt.gz

185.69 kB

MIL455A37_S51_L004_R1_001_preprocessed_rc.tab.gz

185.57 kB

MIL455A37_S51_L004_R1_001_preprocessed_cpm.tab.gz

227.88 kB

MIL455A37_S51_L004_R1_001_preprocessed_expressions.txt.gz

488.81 kB

SK mel STAU1 siRNA tot 2

FASTQ file (single-end)

MIL455A40_S54_L004_R1_001.fastq.gz

297.31 MB

fastqc

Directory

stderr.txt

1.15 kB

MIL455A40_S54_L004_R1_001_fastqc.zip

395.97 kB

BBDuk (single-end)

MIL455A40_S54_L004_R1_001_preprocessed.fastq.gz

237.56 MB

MIL455A40_S54_L004_R1_001_statistics.txt.gz

463 B

fastqc

Directory

STAR

MIL455A40_S54_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.59 MB

MIL455A40_S54_L004_R1_001_preprocessed.bam.bai

3.80 MB

MIL455A40_S54_L004_R1_001_preprocessed.bam

411.47 MB

MIL455A40_S54_L004_R1_001_preprocessed_stats.txt

1.81 kB

MIL455A40_S54_L004_R1_001_preprocessed_SJ.out.tab

1.12 MB

HTSeq-count (CPM)

MIL455A40_S54_L004_R1_001_preprocessed_HTseq_rc.txt.gz

191.96 kB

MIL455A40_S54_L004_R1_001_preprocessed_rc.tab.gz

191.84 kB

MIL455A40_S54_L004_R1_001_preprocessed_cpm.tab.gz

249.86 kB

MIL455A40_S54_L004_R1_001_preprocessed_expressions.txt.gz

519.87 kB

Copy of STAU1 CM cell line Ctrl single KD (60 pmoles) rep1

STAR

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_unmapped.out.mate1.fastq.gz

1.86 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.bam.bai

2.93 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.bam

243.90 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_stats.txt

1.81 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_SJ.out.tab

660.73 kB

BBDuk (single-end)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed.fastq.gz

280.88 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_statistics.txt.gz

477 B

fastqc

Directory

FASTQ file (single-end)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1.fastq.gz

286.84 MB

fastqc

Directory

stderr.txt

1.64 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_fastqc.zip

868.09 kB

HTSeq-count (CPM)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_HTseq_rc.txt.gz

188.41 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_rc.tab.gz

188.29 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_cpm.tab.gz

238.95 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep1_preprocessed_expressions.txt.gz

503.80 kB

Copy of STAU1 CM cell line Ctrl single KD (60 pmoles) rep2

FASTQ file (single-end)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2.fastq.gz

331.75 MB

fastqc

Directory

stderr.txt

1.64 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_fastqc.zip

867.40 kB

BBDuk (single-end)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.fastq.gz

319.68 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_statistics.txt.gz

446 B

fastqc

Directory

STAR

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_unmapped.out.mate1.fastq.gz

2.75 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam.bai

3.10 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed.bam

296.02 MB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_stats.txt

1.81 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_SJ.out.tab

434.14 kB

HTSeq-count (CPM)

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_HTseq_rc.txt.gz

188.14 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_rc.tab.gz

188.02 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_cpm.tab.gz

239.19 kB

STAU1 CM cell line Ctrl single KD (60 pmoles) rep2_preprocessed_expressions.txt.gz

504.79 kB