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Folder iconSemi-extractability library

Tajda Klobučar
April 9, 2021
naive vs naive semi, epi vs epi semi, one day wnt diff vs diff semi Prepared using corall total RNAseq library prep, sequenced in feb 2021

No Sample

FASTQ file (single-end)
fastqc
Directory
MOD2156A46_S20_L002_R1_001.fastq.gz
385.17 MB
stderr.txt
1.17 kB
MOD2156A46_S20_L002_R1_001_fastqc.zip
409.86 kB
MultiQC
multiqc_report.html
1.17 MB
multiqc_data
Directory
featureCounts
featureCounts_rc.txt.summary
357 B
MOD2156A45_S19_L002_R1_001_trimmed_featureCounts_rc.txt.gz
3.65 MB
MOD2156A45_S19_L002_R1_001_trimmed_rc.tab.gz
232.82 kB
MOD2156A45_S19_L002_R1_001_trimmed_tpm.tab.gz
455.00 kB
MOD2156A45_S19_L002_R1_001_trimmed_cpm.tab.gz
322.06 kB
MOD2156A45_S19_L002_R1_001_trimmed_expressions.txt.gz
863.68 kB
STAR
MOD2156A45_S19_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
46.25 MB
MOD2156A45_S19_L002_R1_001_trimmed.bam.bai
3.34 MB
MOD2156A45_S19_L002_R1_001_trimmed.bam
1.22 GB
MOD2156A45_S19_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A45_S19_L002_R1_001_trimmed_SJ.out.tab
4.90 MB
STAR
MOD2156A52_S26_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
35.44 MB
MOD2156A52_S26_L002_R1_001_trimmed.bam.bai
3.15 MB
MOD2156A52_S26_L002_R1_001_trimmed.bam
939.18 MB
MOD2156A52_S26_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A52_S26_L002_R1_001_trimmed_SJ.out.tab
4.59 MB
featureCounts
featureCounts_rc.txt.summary
357 B
MOD2156A45_S19_L002_R1_001_trimmed_featureCounts_rc.txt.gz
3.65 MB
MOD2156A45_S19_L002_R1_001_trimmed_rc.tab.gz
232.73 kB
MOD2156A45_S19_L002_R1_001_trimmed_tpm.tab.gz
457.16 kB
MOD2156A45_S19_L002_R1_001_trimmed_cpm.tab.gz
323.99 kB
MOD2156A45_S19_L002_R1_001_trimmed_expressions.txt.gz
867.24 kB
featureCounts
featureCounts_rc.txt.summary
355 B
MOD2156A52_S26_L002_R1_001_trimmed_featureCounts_rc.txt.gz
3.64 MB
MOD2156A52_S26_L002_R1_001_trimmed_rc.tab.gz
230.00 kB
MOD2156A52_S26_L002_R1_001_trimmed_tpm.tab.gz
445.49 kB
MOD2156A52_S26_L002_R1_001_trimmed_cpm.tab.gz
313.82 kB
MOD2156A52_S26_L002_R1_001_trimmed_expressions.txt.gz
843.29 kB
FASTQ file (single-end)
MOD2156A37_S11_L002_R1_001.fastq.gz
1.45 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A37_S11_L002_R1_001_fastqc.zip
409.31 kB
FASTQ file (single-end)
MOD2156A38_S12_L002_R1_001.fastq.gz
779.96 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A38_S12_L002_R1_001_fastqc.zip
407.83 kB
FASTQ file (single-end)
MOD2156A48_S22_L002_R1_001.fastq.gz
633.74 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A48_S22_L002_R1_001_fastqc.zip
409.88 kB
FASTQ file (single-end)
MOD2156A47_S21_L002_R1_001.fastq.gz
1.24 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A47_S21_L002_R1_001_fastqc.zip
404.07 kB
FASTQ file (single-end)
MOD2156A39_S13_L002_R1_001.fastq.gz
882.74 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A39_S13_L002_R1_001_fastqc.zip
407.92 kB
STAR
MOD2156A39_S13_L002_R1_001_unmapped.out.mate1.fastq.gz
88.11 MB
MOD2156A39_S13_L002_R1_001.bam.bai
3.03 MB
MOD2156A39_S13_L002_R1_001.bam
823.52 MB
MOD2156A39_S13_L002_R1_001_stats.txt
1.82 kB
MOD2156A39_S13_L002_R1_001_SJ.out.tab
6.03 MB
STAR
MOD2156A46_S20_L002_R1_001_unmapped.out.mate1.fastq.gz
103.11 MB
MOD2156A46_S20_L002_R1_001.bam.bai
2.11 MB
MOD2156A46_S20_L002_R1_001.bam
292.10 MB
MOD2156A46_S20_L002_R1_001_stats.txt
1.81 kB
MOD2156A46_S20_L002_R1_001_SJ.out.tab
3.88 MB
MOD2156A46_S20_L002_R1_001.bw
16.93 MB
STAR
MOD2156A38_S12_L002_R1_001_unmapped.out.mate1.fastq.gz
147.63 MB
MOD2156A38_S12_L002_R1_001.bam.bai
2.80 MB
MOD2156A38_S12_L002_R1_001.bam
663.88 MB
MOD2156A38_S12_L002_R1_001_stats.txt
1.82 kB
MOD2156A38_S12_L002_R1_001_SJ.out.tab
5.59 MB
STAR
MOD2156A48_S22_L002_R1_001_unmapped.out.mate1.fastq.gz
62.18 MB
MOD2156A48_S22_L002_R1_001.bam.bai
2.60 MB
MOD2156A48_S22_L002_R1_001.bam
583.34 MB
MOD2156A48_S22_L002_R1_001_stats.txt
1.82 kB
MOD2156A48_S22_L002_R1_001_SJ.out.tab
5.33 MB
STAR
MOD2156A47_S21_L002_R1_001_unmapped.out.mate1.fastq.gz
106.09 MB
MOD2156A47_S21_L002_R1_001.bam.bai
3.58 MB
MOD2156A47_S21_L002_R1_001.bam
1.10 GB
MOD2156A47_S21_L002_R1_001_stats.txt
1.82 kB
MOD2156A47_S21_L002_R1_001_SJ.out.tab
7.22 MB
STAR
MOD2156A37_S11_L002_R1_001_unmapped.out.mate1.fastq.gz
342.86 MB
MOD2156A37_S11_L002_R1_001.bam.bai
3.74 MB
MOD2156A37_S11_L002_R1_001.bam
1.14 GB
MOD2156A37_S11_L002_R1_001_stats.txt
1.82 kB
MOD2156A37_S11_L002_R1_001_SJ.out.tab
7.34 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.05 kB
MOD2156A38_S12_L002_R1_001_trimmed.fastq.gz
645.09 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.fastq.gz
51.95 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.31 kB
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.01 kB
MOD2156A46_S20_L002_R1_001_trimmed.fastq.gz
309.53 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.29 kB
Samtools idxstats
idxstat_report.txt
3.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
UMI-tools dedup
MOD2156A47_S21_L002_R1_001_trimmed_dedup.bam
1.06 GB
MOD2156A47_S21_L002_R1_001_trimmed_dedup.log
18.13 kB
MOD2156A47_S21_L002_R1_001_trimmed_dedup_stats.zip
5.52 MB
MOD2156A47_S21_L002_R1_001_trimmed_dedup.bam.bai
3.28 MB
MOD2156A47_S21_L002_R1_001_trimmed_stats.txt
395 B
Samtools idxstats
idxstat_report.txt
3.32 kB
Samtools idxstats
idxstat_report.txt
3.33 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.04 kB
MOD2156A39_S13_L002_R1_001_trimmed.fastq.gz
749.55 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.02 kB
MOD2156A48_S22_L002_R1_001_trimmed.fastq.gz
545.04 MB
fastqc
Directory
STAR
MOD2156A38_S12_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
21.45 MB
MOD2156A38_S12_L002_R1_001_trimmed.bam.bai
3.41 MB
MOD2156A38_S12_L002_R1_001_trimmed.bam
904.22 MB
MOD2156A38_S12_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A38_S12_L002_R1_001_trimmed_SJ.out.tab
4.87 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.08 kB
MOD2156A37_S11_L002_R1_001_trimmed.fastq.gz
1.19 GB
fastqc
Directory
Subsample FASTQ (single-end)
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.fastq.gz
49.36 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.04 kB
MOD2156A47_S21_L002_R1_001_trimmed.fastq.gz
1.08 GB
fastqc
Directory
Subsample FASTQ (single-end)
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.fastq.gz
47.76 MB
fastqc
Directory
STAR
MOD2156A46_S20_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
12.08 MB
MOD2156A46_S20_L002_R1_001_trimmed.bam.bai
3.42 MB
MOD2156A46_S20_L002_R1_001_trimmed.bam
451.09 MB
MOD2156A46_S20_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD2156A46_S20_L002_R1_001_trimmed_SJ.out.tab
3.93 MB
STAR
MOD2156A39_S13_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
21.90 MB
MOD2156A39_S13_L002_R1_001_trimmed.bam.bai
3.31 MB
MOD2156A39_S13_L002_R1_001_trimmed.bam
937.32 MB
MOD2156A39_S13_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A39_S13_L002_R1_001_trimmed_SJ.out.tab
4.95 MB
STAR
MOD2156A48_S22_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
17.43 MB
MOD2156A48_S22_L002_R1_001_trimmed.bam.bai
3.14 MB
MOD2156A48_S22_L002_R1_001_trimmed.bam
652.58 MB
MOD2156A48_S22_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A48_S22_L002_R1_001_trimmed_SJ.out.tab
4.75 MB
Subsample FASTQ (single-end)
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.fastq.gz
52.57 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.fastq.gz
48.72 MB
fastqc
Directory
STAR
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
49.19 MB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.bam
2.61 kB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A37_S11_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
46.36 MB
MOD2156A37_S11_L002_R1_001_trimmed.bam.bai
3.34 MB
MOD2156A37_S11_L002_R1_001_trimmed.bam
1.68 GB
MOD2156A37_S11_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A37_S11_L002_R1_001_trimmed_SJ.out.tab
6.02 MB
STAR
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
47.94 MB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.bam.bai
2.24 kB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.bam
1.58 MB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_SJ.out.tab
19.20 kB
Subsample FASTQ (single-end)
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.fastq.gz
52.91 MB
fastqc
Directory
STAR
MOD2156A47_S21_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
32.96 MB
MOD2156A47_S21_L002_R1_001_trimmed.bam.bai
3.31 MB
MOD2156A47_S21_L002_R1_001_trimmed.bam
1.20 GB
MOD2156A47_S21_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A47_S21_L002_R1_001_trimmed_SJ.out.tab
5.81 MB
STAR
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.78 MB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.bam.bai
1.82 kB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.bam
1.24 MB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.23 kB
STAR
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
46.80 MB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.bam.bai
1.62 kB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.bam
1.16 MB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.93 kB
STAR
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
47.58 MB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.bam
4.16 kB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.77 MB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.bam
1.61 kB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.48 MB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.bam.bai
1.62 kB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.bam
1.06 MB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_SJ.out.tab
17.69 kB
UMI-tools dedup
MOD2156A46_S20_L002_R1_001_trimmed_dedup.bam
417.28 MB
MOD2156A46_S20_L002_R1_001_trimmed_dedup.log
8.83 kB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_stats.zip
3.93 MB
MOD2156A46_S20_L002_R1_001_trimmed_dedup.bam.bai
3.42 MB
MOD2156A46_S20_L002_R1_001_trimmed_stats.txt
393 B
MOD2156A46_S20_L002_R1_001_trimmed_dedup.bw
20.20 MB
STAR
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.40 MB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.bam
1.89 kB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A48_S22_L002_R1_001_trimmed_dedup.bam
596.75 MB
MOD2156A48_S22_L002_R1_001_trimmed_dedup.log
11.34 kB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_stats.zip
4.53 MB
MOD2156A48_S22_L002_R1_001_trimmed_dedup.bam.bai
3.13 MB
MOD2156A48_S22_L002_R1_001_trimmed_stats.txt
395 B
UMI-tools dedup
MOD2156A38_S12_L002_R1_001_trimmed_dedup.bam
808.34 MB
MOD2156A38_S12_L002_R1_001_trimmed_dedup.log
14.84 kB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_stats.zip
5.21 MB
MOD2156A38_S12_L002_R1_001_trimmed_dedup.bam.bai
3.40 MB
MOD2156A38_S12_L002_R1_001_trimmed_stats.txt
395 B
STAR
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
47.34 MB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.bam.bai
2.27 kB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.bam
1.66 MB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_SJ.out.tab
20.98 kB
STAR
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
48.54 MB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.bam
3.67 kB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.08 MB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.bam.bai
1.32 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.bam
833.66 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.84 kB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD2156A46_S20_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_rc.tab.gz
221.71 kB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_tpm.tab.gz
408.24 kB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_cpm.tab.gz
283.83 kB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_expressions.txt.gz
769.76 kB
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A48_S22_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_rc.tab.gz
224.56 kB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_tpm.tab.gz
410.90 kB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_cpm.tab.gz
298.64 kB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_expressions.txt.gz
787.20 kB
STAR
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.74 MB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.bam
1.37 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A38_S12_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_rc.tab.gz
226.79 kB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_tpm.tab.gz
430.05 kB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_cpm.tab.gz
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MOD2156A47_S21_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
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MOD2156A47_S21_L002_R1_001_trimmed_dedup_rc.tab.gz
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317.30 kB
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UMI-tools dedup
MOD2156A39_S13_L002_R1_001_trimmed_dedup.bam
830.74 MB
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15.28 kB
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5.34 MB
MOD2156A39_S13_L002_R1_001_trimmed_dedup.bam.bai
3.30 MB
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395 B
MultiQC
multiqc_data
Directory
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1.17 MB
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361 B
MOD2156A39_S13_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
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425.35 kB
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305.31 kB
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810.15 kB
UMI-tools dedup
MOD2156A37_S11_L002_R1_001_trimmed_dedup.bam
1.50 GB
MOD2156A37_S11_L002_R1_001_trimmed_dedup.log
25.37 kB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_stats.zip
6.12 MB
MOD2156A37_S11_L002_R1_001_trimmed_dedup.bam.bai
3.31 MB
MOD2156A37_S11_L002_R1_001_trimmed_stats.txt
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MOD2156A37_S11_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.65 MB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_rc.tab.gz
232.92 kB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_tpm.tab.gz
463.03 kB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_cpm.tab.gz
323.80 kB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_expressions.txt.gz
873.38 kB
DESeq2
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220.02 kB
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Gene set
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MOD2156A41_S15_L002_R1_001.fastq.gz
809.42 MB
fastqc
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MOD2156A41_S15_L002_R1_001_fastqc.zip
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FASTQ file (single-end)
MOD2156A40_S14_L002_R1_001.fastq.gz
970.85 MB
fastqc
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1.17 kB
MOD2156A40_S14_L002_R1_001_fastqc.zip
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FASTQ file (single-end)
MOD2156A42_S16_L002_R1_001.fastq.gz
1.13 GB
fastqc
Directory
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1.17 kB
MOD2156A42_S16_L002_R1_001_fastqc.zip
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FASTQ file (single-end)
MOD2156A50_S24_L002_R1_001.fastq.gz
2.95 GB
fastqc
Directory
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1.17 kB
MOD2156A50_S24_L002_R1_001_fastqc.zip
411.15 kB
FASTQ file (single-end)
MOD2156A51_S25_L002_R1_001.fastq.gz
945.71 MB
fastqc
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1.17 kB
MOD2156A51_S25_L002_R1_001_fastqc.zip
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FASTQ file (single-end)
MOD2156A53_S27_L002_R1_001.fastq.gz
427.65 MB
fastqc
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1.17 kB
MOD2156A53_S27_L002_R1_001_fastqc.zip
407.76 kB
FASTQ file (single-end)
MOD2156A49_S23_L002_R1_001.fastq.gz
1.19 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A49_S23_L002_R1_001_fastqc.zip
408.54 kB
FASTQ file (single-end)
MOD2156A45_S19_L002_R1_001.fastq.gz
1.28 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A45_S19_L002_R1_001_fastqc.zip
411.54 kB
FASTQ file (single-end)
MOD2156A54_S28_L002_R1_001.fastq.gz
961.40 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A54_S28_L002_R1_001_fastqc.zip
406.18 kB
FASTQ file (single-end)
MOD2156A43_S17_L002_R1_001.fastq.gz
958.57 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A43_S17_L002_R1_001_fastqc.zip
400.27 kB
FASTQ file (single-end)
MOD2156A44_S18_L002_R1_001.fastq.gz
868.15 MB
fastqc
Directory
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1.17 kB
MOD2156A44_S18_L002_R1_001_fastqc.zip
404.80 kB
FASTQ file (single-end)
MOD2156A52_S26_L002_R1_001.fastq.gz
1006.10 MB
fastqc
Directory
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1.17 kB
MOD2156A52_S26_L002_R1_001_fastqc.zip
413.60 kB
Cutadapt (Corall RNA-Seq, single-end)
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1.02 kB
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679.22 MB
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828.56 MB
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50.35 MB
fastqc
Directory
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3.30 kB
Samtools idxstats
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3.30 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Samtools idxstats
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3.31 kB
Cutadapt (Corall RNA-Seq, single-end)
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MOD2156A50_S24_L002_R1_001_trimmed.fastq.gz
2.54 GB
fastqc
Directory
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1.06 kB
MOD2156A42_S16_L002_R1_001_trimmed.fastq.gz
1003.98 MB
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
UMI-tools dedup
MOD2156A50_S24_L002_R1_001_trimmed_dedup.bam
2.60 GB
MOD2156A50_S24_L002_R1_001_trimmed_dedup.log
40.71 kB
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6.81 MB
MOD2156A50_S24_L002_R1_001_trimmed_dedup.bam.bai
3.31 MB
MOD2156A50_S24_L002_R1_001_trimmed_stats.txt
396 B
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MOD2156A50_S24_L002_R1_001_trimmed_downsampled.fastq.gz
50.56 MB
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3.34 kB
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3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
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1.08 kB
MOD2156A51_S25_L002_R1_001_trimmed.fastq.gz
820.07 MB
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MOD2156A49_S23_L002_R1_001_trimmed.fastq.gz
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53.02 MB
fastqc
Directory
Samtools idxstats
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3.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.02 kB
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750.87 MB
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Directory
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MOD2156A52_S26_L002_R1_001_trimmed_downsampled.fastq.gz
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fastqc
Directory
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3.31 kB
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52.63 MB
fastqc
Directory
Samtools idxstats
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3.30 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
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1008 B
MOD2156A53_S27_L002_R1_001_trimmed.fastq.gz
367.04 MB
fastqc
Directory
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1.04 kB
MOD2156A43_S17_L002_R1_001_trimmed.fastq.gz
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fastqc
Directory
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3.28 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Subsample FASTQ (single-end)
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.fastq.gz
52.26 MB
fastqc
Directory
Samtools idxstats
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3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
STAR
MOD2156A41_S15_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
26.25 MB
MOD2156A41_S15_L002_R1_001_trimmed.bam.bai
3.38 MB
MOD2156A41_S15_L002_R1_001_trimmed.bam
918.62 MB
MOD2156A41_S15_L002_R1_001_trimmed_stats.txt
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4.57 MB
STAR
MOD2156A51_S25_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
28.13 MB
MOD2156A51_S25_L002_R1_001_trimmed.bam.bai
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MOD2156A51_S25_L002_R1_001_trimmed.bam
952.30 MB
MOD2156A51_S25_L002_R1_001_trimmed_stats.txt
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MOD2156A51_S25_L002_R1_001_trimmed_SJ.out.tab
5.12 MB
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MOD2156A51_S25_L002_R1_001_trimmed_downsampled.fastq.gz
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fastqc
Directory
Subsample FASTQ (single-end)
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51.87 MB
fastqc
Directory
STAR
MOD2156A40_S14_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
27.49 MB
MOD2156A40_S14_L002_R1_001_trimmed.bam.bai
3.21 MB
MOD2156A40_S14_L002_R1_001_trimmed.bam
1.01 GB
MOD2156A40_S14_L002_R1_001_trimmed_stats.txt
1.82 kB
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4.84 MB
STAR
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MOD2156A49_S23_L002_R1_001_trimmed.bam
1.15 GB
MOD2156A49_S23_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A49_S23_L002_R1_001_trimmed_SJ.out.tab
5.50 MB
Cutadapt (Corall RNA-Seq, single-end)
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Directory
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fastqc
Directory
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MOD2156A45_S19_L002_R1_001_trimmed.fastq.gz
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Directory
Subsample FASTQ (single-end)
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52.56 MB
fastqc
Directory
STAR
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
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MOD2156A41_S15_L002_R1_001_trimmed_downsampled.bam.bai
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MOD2156A41_S15_L002_R1_001_trimmed_downsampled.bam
1.59 MB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_stats.txt
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MOD2156A54_S28_L002_R1_001_trimmed.fastq.gz
829.61 MB
fastqc
Directory
STAR
MOD2156A42_S16_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
33.64 MB
MOD2156A42_S16_L002_R1_001_trimmed.bam.bai
3.28 MB
MOD2156A42_S16_L002_R1_001_trimmed.bam
1.17 GB
MOD2156A42_S16_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A42_S16_L002_R1_001_trimmed_SJ.out.tab
5.18 MB
STAR
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.18 MB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A41_S15_L002_R1_001_trimmed_downsampled.bam
1.82 kB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_stats.txt
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MOD2156A41_S15_L002_R1_001_trimmed_downsampled_SJ.out.tab
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STAR
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MOD2156A51_S25_L002_R1_001_trimmed_downsampled.bam.bai
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MOD2156A51_S25_L002_R1_001_trimmed_downsampled.bam
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1.79 kB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled_SJ.out.tab
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STAR
MOD2156A51_S25_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.42 MB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled.bam.bai
272 B
MOD2156A51_S25_L002_R1_001_trimmed_downsampled.bam
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MOD2156A51_S25_L002_R1_001_trimmed_downsampled_stats.txt
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MOD2156A51_S25_L002_R1_001_trimmed_downsampled_SJ.out.tab
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STAR
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
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MOD2156A40_S14_L002_R1_001_trimmed_downsampled.bam.bai
1.74 kB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled.bam
1.16 MB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_stats.txt
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MOD2156A40_S14_L002_R1_001_trimmed_downsampled_SJ.out.tab
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STAR
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.71 MB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled.bam.bai
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MOD2156A40_S14_L002_R1_001_trimmed_downsampled.bam
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MOD2156A40_S14_L002_R1_001_trimmed_downsampled_stats.txt
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0 B
UMI-tools dedup
MOD2156A51_S25_L002_R1_001_trimmed_dedup.bam
856.62 MB
MOD2156A51_S25_L002_R1_001_trimmed_dedup.log
14.84 kB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_stats.zip
5.08 MB
MOD2156A51_S25_L002_R1_001_trimmed_dedup.bam.bai
3.18 MB
MOD2156A51_S25_L002_R1_001_trimmed_stats.txt
395 B
UMI-tools dedup
MOD2156A41_S15_L002_R1_001_trimmed_dedup.bam
828.57 MB
MOD2156A41_S15_L002_R1_001_trimmed_dedup.log
15.01 kB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_stats.zip
5.15 MB
MOD2156A41_S15_L002_R1_001_trimmed_dedup.bam.bai
3.37 MB
MOD2156A41_S15_L002_R1_001_trimmed_stats.txt
395 B
STAR
MOD2156A44_S18_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
26.71 MB
MOD2156A44_S18_L002_R1_001_trimmed.bam.bai
3.06 MB
MOD2156A44_S18_L002_R1_001_trimmed.bam
897.43 MB
MOD2156A44_S18_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A44_S18_L002_R1_001_trimmed_SJ.out.tab
4.73 MB
STAR
MOD2156A50_S24_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
91.12 MB
MOD2156A50_S24_L002_R1_001_trimmed.bam.bai
3.41 MB
MOD2156A50_S24_L002_R1_001_trimmed.bam
2.97 GB
MOD2156A50_S24_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A50_S24_L002_R1_001_trimmed_SJ.out.tab
7.66 MB
STAR
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.69 MB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.bam.bai
1.82 kB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.bam
1.23 MB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_SJ.out.tab
18.20 kB
STAR
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52.88 MB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.bam
1.09 kB
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STAR
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32.04 MB
MOD2156A52_S26_L002_R1_001_trimmed.bam.bai
3.27 MB
MOD2156A52_S26_L002_R1_001_trimmed.bam
1009.34 MB
MOD2156A52_S26_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A52_S26_L002_R1_001_trimmed_SJ.out.tab
4.91 MB
STAR
MOD2156A53_S27_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
14.76 MB
MOD2156A53_S27_L002_R1_001_trimmed.bam.bai
2.88 MB
MOD2156A53_S27_L002_R1_001_trimmed.bam
454.15 MB
MOD2156A53_S27_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD2156A53_S27_L002_R1_001_trimmed_SJ.out.tab
4.17 MB
Subsample FASTQ (single-end)
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.fastq.gz
52.59 MB
fastqc
Directory
STAR
MOD2156A45_S19_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
38.83 MB
MOD2156A45_S19_L002_R1_001_trimmed.bam.bai
3.38 MB
MOD2156A45_S19_L002_R1_001_trimmed.bam
1.34 GB
MOD2156A45_S19_L002_R1_001_trimmed_stats.txt
1.82 kB
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5.25 MB
Subsample FASTQ (single-end)
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.fastq.gz
51.79 MB
fastqc
Directory
STAR
MOD2156A43_S17_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
29.80 MB
MOD2156A43_S17_L002_R1_001_trimmed.bam.bai
3.20 MB
MOD2156A43_S17_L002_R1_001_trimmed.bam
996.91 MB
MOD2156A43_S17_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A43_S17_L002_R1_001_trimmed_SJ.out.tab
4.88 MB
STAR
MOD2156A54_S28_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
28.77 MB
MOD2156A54_S28_L002_R1_001_trimmed.bam.bai
3.24 MB
MOD2156A54_S28_L002_R1_001_trimmed.bam
985.57 MB
MOD2156A54_S28_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A54_S28_L002_R1_001_trimmed_SJ.out.tab
5.15 MB
UMI-tools dedup
MOD2156A49_S23_L002_R1_001_trimmed_dedup.bam
1.00 GB
MOD2156A49_S23_L002_R1_001_trimmed_dedup.log
17.70 kB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_stats.zip
5.52 MB
MOD2156A49_S23_L002_R1_001_trimmed_dedup.bam.bai
3.28 MB
MOD2156A49_S23_L002_R1_001_trimmed_stats.txt
395 B
STAR
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.61 MB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.bam.bai
1.60 kB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.bam
1.00 MB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_SJ.out.tab
14.30 kB
STAR
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.38 MB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.bam
1.62 kB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A51_S25_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_rc.tab.gz
227.08 kB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_tpm.tab.gz
418.22 kB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_cpm.tab.gz
308.80 kB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_expressions.txt.gz
806.10 kB
UMI-tools dedup
MOD2156A42_S16_L002_R1_001_trimmed_dedup.bam
1.03 GB
MOD2156A42_S16_L002_R1_001_trimmed_dedup.log
18.79 kB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_stats.zip
5.67 MB
MOD2156A42_S16_L002_R1_001_trimmed_dedup.bam.bai
3.26 MB
MOD2156A42_S16_L002_R1_001_trimmed_stats.txt
395 B
STAR
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
49.80 MB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.bam.bai
1.29 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.bam
831.97 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.58 kB
STAR
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.39 MB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.bam
2.44 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A40_S14_L002_R1_001_trimmed_dedup.bam
908.37 MB
MOD2156A40_S14_L002_R1_001_trimmed_dedup.log
16.82 kB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_stats.zip
5.55 MB
MOD2156A40_S14_L002_R1_001_trimmed_dedup.bam.bai
3.19 MB
MOD2156A40_S14_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A41_S15_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_rc.tab.gz
226.27 kB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_tpm.tab.gz
422.46 kB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_cpm.tab.gz
302.19 kB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_expressions.txt.gz
804.64 kB
STAR
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.07 MB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.bam.bai
1.41 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.bam
897.30 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_SJ.out.tab
14.93 kB
STAR
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.85 MB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.bam
1.39 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.92 MB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.bam.bai
9.09 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.bam
6.66 MB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_SJ.out.tab
19.05 kB
UMI-tools dedup
MOD2156A53_S27_L002_R1_001_trimmed_dedup.bam
417.48 MB
MOD2156A53_S27_L002_R1_001_trimmed_dedup.log
8.83 kB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_stats.zip
3.97 MB
MOD2156A53_S27_L002_R1_001_trimmed_dedup.bam.bai
2.88 MB
MOD2156A53_S27_L002_R1_001_trimmed_stats.txt
393 B
MOD2156A53_S27_L002_R1_001_trimmed_dedup.bw
19.48 MB
STAR
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.08 MB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.bam
1.39 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.90 MB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.bam.bai
2.20 kB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.bam
1.44 MB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_SJ.out.tab
16.67 kB
UMI-tools dedup
MOD2156A44_S18_L002_R1_001_trimmed_dedup.bam
796.25 MB
MOD2156A44_S18_L002_R1_001_trimmed_dedup.log
14.73 kB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_stats.zip
5.21 MB
MOD2156A44_S18_L002_R1_001_trimmed_dedup.bam.bai
3.04 MB
MOD2156A44_S18_L002_R1_001_trimmed_stats.txt
395 B
STAR
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.41 MB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.bam
1.46 kB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.63 MB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.bam.bai
344 B
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.bam
1.50 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
49.91 MB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.bam.bai
2.37 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.bam
1.67 MB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.27 kB
STAR
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.84 MB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.bam.bai
1.35 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.bam
851.47 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.99 kB
STAR
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.54 MB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.bam.bai
1.20 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.bam
716.80 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_SJ.out.tab
14.73 kB
STAR
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.47 MB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.bam
1.59 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A49_S23_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_rc.tab.gz
228.85 kB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_tpm.tab.gz
424.48 kB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_cpm.tab.gz
315.25 kB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_expressions.txt.gz
819.88 kB
STAR
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.10 MB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.bam
1.64 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
362 B
MOD2156A42_S16_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_rc.tab.gz
228.16 kB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_tpm.tab.gz
425.22 kB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_cpm.tab.gz
311.18 kB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_expressions.txt.gz
816.02 kB
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A40_S14_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_rc.tab.gz
226.71 kB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_tpm.tab.gz
418.96 kB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_cpm.tab.gz
306.08 kB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_expressions.txt.gz
803.65 kB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD2156A53_S27_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_rc.tab.gz
221.03 kB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_tpm.tab.gz
392.11 kB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_cpm.tab.gz
285.27 kB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_expressions.txt.gz
753.08 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A44_S18_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_rc.tab.gz
225.83 kB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_tpm.tab.gz
412.87 kB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_cpm.tab.gz
302.10 kB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_expressions.txt.gz
793.59 kB
UMI-tools dedup
MOD2156A54_S28_L002_R1_001_trimmed_dedup.bam
892.11 MB
MOD2156A54_S28_L002_R1_001_trimmed_dedup.log
15.34 kB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_stats.zip
5.13 MB
MOD2156A54_S28_L002_R1_001_trimmed_dedup.bam.bai
3.23 MB
MOD2156A54_S28_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
364 B
MOD2156A50_S24_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.65 MB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_rc.tab.gz
238.44 kB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_tpm.tab.gz
477.80 kB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_cpm.tab.gz
345.12 kB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_expressions.txt.gz
911.89 kB
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A54_S28_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_rc.tab.gz
227.35 kB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_tpm.tab.gz
419.91 kB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_cpm.tab.gz
307.87 kB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_expressions.txt.gz
806.40 kB
UMI-tools dedup
MOD2156A43_S17_L002_R1_001_trimmed_dedup.bam
881.09 MB
MOD2156A43_S17_L002_R1_001_trimmed_dedup.log
16.21 kB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_stats.zip
5.41 MB
MOD2156A43_S17_L002_R1_001_trimmed_dedup.bam.bai
3.18 MB
MOD2156A43_S17_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A43_S17_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_rc.tab.gz
226.77 kB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_tpm.tab.gz
419.96 kB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_cpm.tab.gz
305.78 kB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_expressions.txt.gz
804.89 kB
Gene set
Epi_epi_semi_deseq_DESeq2_logFC1.0_FDR0.05_down.tab.gz
5.52 kB
Gene set
Epi_epi_semi_deseq_DESeq2_logFC1.0_FDR0.05_up.tab.gz
6.90 kB
DESeq2
de_file.tab.gz
718.84 kB
diffexp_deseq2.tab.gz
1.02 MB
count_matrix.tab.gz
231.85 kB
Gene set
Epi_epi_semi_deseq_DESeq2_logFC1.0_FDR0.05_all.tab.gz
50.83 kB
UMI-tools dedup
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_dedup.bam
1.60 MB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_dedup.log
4.03 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_dedup_stats.zip
110.31 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_dedup.bam.bai
2.07 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_stats.txt
386 B
DESeq2
de_file.tab.gz
593.40 kB
diffexp_deseq2.tab.gz
863.06 kB
count_matrix.tab.gz
149.86 kB
UMI-tools dedup
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_dedup.bam
1.39 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_dedup.log
4.01 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_dedup_stats.zip
836 B
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_dedup.bam.bai
416 B
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_stats.txt
377 B

Naive_2

FASTQ file (single-end)
MOD2156A38_S12_L002_R1_001.fastq.gz
779.96 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A38_S12_L002_R1_001_fastqc.zip
407.83 kB
STAR
MOD2156A38_S12_L002_R1_001_unmapped.out.mate1.fastq.gz
147.63 MB
MOD2156A38_S12_L002_R1_001.bam.bai
2.80 MB
MOD2156A38_S12_L002_R1_001.bam
663.88 MB
MOD2156A38_S12_L002_R1_001_stats.txt
1.82 kB
MOD2156A38_S12_L002_R1_001_SJ.out.tab
5.59 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.05 kB
MOD2156A38_S12_L002_R1_001_trimmed.fastq.gz
645.09 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
STAR
MOD2156A38_S12_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
21.45 MB
MOD2156A38_S12_L002_R1_001_trimmed.bam.bai
3.41 MB
MOD2156A38_S12_L002_R1_001_trimmed.bam
904.22 MB
MOD2156A38_S12_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A38_S12_L002_R1_001_trimmed_SJ.out.tab
4.87 MB
Subsample FASTQ (single-end)
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.fastq.gz
49.36 MB
fastqc
Directory
STAR
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
49.19 MB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.bam
2.61 kB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
47.94 MB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.bam.bai
2.24 kB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled.bam
1.58 MB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A38_S12_L002_R1_001_trimmed_downsampled_SJ.out.tab
19.20 kB
UMI-tools dedup
MOD2156A38_S12_L002_R1_001_trimmed_dedup.bam
808.34 MB
MOD2156A38_S12_L002_R1_001_trimmed_dedup.log
14.84 kB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_stats.zip
5.21 MB
MOD2156A38_S12_L002_R1_001_trimmed_dedup.bam.bai
3.40 MB
MOD2156A38_S12_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A38_S12_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_rc.tab.gz
226.79 kB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_tpm.tab.gz
430.05 kB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_cpm.tab.gz
303.05 kB
MOD2156A38_S12_L002_R1_001_trimmed_dedup_expressions.txt.gz
814.28 kB

Naive_semi_1

FASTQ file (single-end)
MOD2156A46_S20_L002_R1_001.fastq.gz
385.17 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A46_S20_L002_R1_001_fastqc.zip
409.86 kB
STAR
MOD2156A46_S20_L002_R1_001_unmapped.out.mate1.fastq.gz
103.11 MB
MOD2156A46_S20_L002_R1_001.bam.bai
2.11 MB
MOD2156A46_S20_L002_R1_001.bam
292.10 MB
MOD2156A46_S20_L002_R1_001_stats.txt
1.81 kB
MOD2156A46_S20_L002_R1_001_SJ.out.tab
3.88 MB
MOD2156A46_S20_L002_R1_001.bw
16.93 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.01 kB
MOD2156A46_S20_L002_R1_001_trimmed.fastq.gz
309.53 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Subsample FASTQ (single-end)
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.fastq.gz
47.76 MB
fastqc
Directory
STAR
MOD2156A46_S20_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
12.08 MB
MOD2156A46_S20_L002_R1_001_trimmed.bam.bai
3.42 MB
MOD2156A46_S20_L002_R1_001_trimmed.bam
451.09 MB
MOD2156A46_S20_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD2156A46_S20_L002_R1_001_trimmed_SJ.out.tab
3.93 MB
STAR
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
46.80 MB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.bam.bai
1.62 kB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.bam
1.16 MB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.93 kB
STAR
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
47.58 MB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A46_S20_L002_R1_001_trimmed_downsampled.bam
4.16 kB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A46_S20_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A46_S20_L002_R1_001_trimmed_dedup.bam
417.28 MB
MOD2156A46_S20_L002_R1_001_trimmed_dedup.log
8.83 kB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_stats.zip
3.93 MB
MOD2156A46_S20_L002_R1_001_trimmed_dedup.bam.bai
3.42 MB
MOD2156A46_S20_L002_R1_001_trimmed_stats.txt
393 B
MOD2156A46_S20_L002_R1_001_trimmed_dedup.bw
20.20 MB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD2156A46_S20_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_rc.tab.gz
221.71 kB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_tpm.tab.gz
408.24 kB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_cpm.tab.gz
283.83 kB
MOD2156A46_S20_L002_R1_001_trimmed_dedup_expressions.txt.gz
769.76 kB

Epi_semi_3

FASTQ file (single-end)
MOD2156A51_S25_L002_R1_001.fastq.gz
945.71 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A51_S25_L002_R1_001_fastqc.zip
407.33 kB
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.08 kB
MOD2156A51_S25_L002_R1_001_trimmed.fastq.gz
820.07 MB
fastqc
Directory
STAR
MOD2156A51_S25_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
28.13 MB
MOD2156A51_S25_L002_R1_001_trimmed.bam.bai
3.20 MB
MOD2156A51_S25_L002_R1_001_trimmed.bam
952.30 MB
MOD2156A51_S25_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A51_S25_L002_R1_001_trimmed_SJ.out.tab
5.12 MB
Subsample FASTQ (single-end)
MOD2156A51_S25_L002_R1_001_trimmed_downsampled.fastq.gz
52.59 MB
fastqc
Directory
STAR
MOD2156A51_S25_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.61 MB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled.bam.bai
1.39 kB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled.bam
877.83 kB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled_SJ.out.tab
14.31 kB
STAR
MOD2156A51_S25_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.42 MB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled.bam.bai
272 B
MOD2156A51_S25_L002_R1_001_trimmed_downsampled.bam
1.06 kB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A51_S25_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A51_S25_L002_R1_001_trimmed_dedup.bam
856.62 MB
MOD2156A51_S25_L002_R1_001_trimmed_dedup.log
14.84 kB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_stats.zip
5.08 MB
MOD2156A51_S25_L002_R1_001_trimmed_dedup.bam.bai
3.18 MB
MOD2156A51_S25_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A51_S25_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_rc.tab.gz
227.08 kB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_tpm.tab.gz
418.22 kB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_cpm.tab.gz
308.80 kB
MOD2156A51_S25_L002_R1_001_trimmed_dedup_expressions.txt.gz
806.10 kB

Naive_3

FASTQ file (single-end)
MOD2156A39_S13_L002_R1_001.fastq.gz
882.74 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A39_S13_L002_R1_001_fastqc.zip
407.92 kB
STAR
MOD2156A39_S13_L002_R1_001_unmapped.out.mate1.fastq.gz
88.11 MB
MOD2156A39_S13_L002_R1_001.bam.bai
3.03 MB
MOD2156A39_S13_L002_R1_001.bam
823.52 MB
MOD2156A39_S13_L002_R1_001_stats.txt
1.82 kB
MOD2156A39_S13_L002_R1_001_SJ.out.tab
6.03 MB
Subsample FASTQ (single-end)
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.fastq.gz
51.95 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.04 kB
MOD2156A39_S13_L002_R1_001_trimmed.fastq.gz
749.55 MB
fastqc
Directory
STAR
MOD2156A39_S13_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
21.90 MB
MOD2156A39_S13_L002_R1_001_trimmed.bam.bai
3.31 MB
MOD2156A39_S13_L002_R1_001_trimmed.bam
937.32 MB
MOD2156A39_S13_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A39_S13_L002_R1_001_trimmed_SJ.out.tab
4.95 MB
STAR
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.78 MB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.bam.bai
1.82 kB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.bam
1.24 MB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.23 kB
STAR
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.77 MB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A39_S13_L002_R1_001_trimmed_downsampled.bam
1.61 kB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A39_S13_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A39_S13_L002_R1_001_trimmed_dedup.bam
830.74 MB
MOD2156A39_S13_L002_R1_001_trimmed_dedup.log
15.28 kB
MOD2156A39_S13_L002_R1_001_trimmed_dedup_stats.zip
5.34 MB
MOD2156A39_S13_L002_R1_001_trimmed_dedup.bam.bai
3.30 MB
MOD2156A39_S13_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A39_S13_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A39_S13_L002_R1_001_trimmed_dedup_rc.tab.gz
227.06 kB
MOD2156A39_S13_L002_R1_001_trimmed_dedup_tpm.tab.gz
425.35 kB
MOD2156A39_S13_L002_R1_001_trimmed_dedup_cpm.tab.gz
305.31 kB
MOD2156A39_S13_L002_R1_001_trimmed_dedup_expressions.txt.gz
810.15 kB

Epi_semi_1

FASTQ file (single-end)
MOD2156A49_S23_L002_R1_001.fastq.gz
1.19 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A49_S23_L002_R1_001_fastqc.zip
408.54 kB
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.12 kB
MOD2156A49_S23_L002_R1_001_trimmed.fastq.gz
1.03 GB
fastqc
Directory
STAR
MOD2156A49_S23_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
32.09 MB
MOD2156A49_S23_L002_R1_001_trimmed.bam.bai
3.30 MB
MOD2156A49_S23_L002_R1_001_trimmed.bam
1.15 GB
MOD2156A49_S23_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A49_S23_L002_R1_001_trimmed_SJ.out.tab
5.50 MB
Subsample FASTQ (single-end)
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.fastq.gz
53.06 MB
fastqc
Directory
STAR
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.69 MB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.bam.bai
1.82 kB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.bam
1.23 MB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_SJ.out.tab
18.20 kB
STAR
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.88 MB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A49_S23_L002_R1_001_trimmed_downsampled.bam
1.09 kB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A49_S23_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A49_S23_L002_R1_001_trimmed_dedup.bam
1.00 GB
MOD2156A49_S23_L002_R1_001_trimmed_dedup.log
17.70 kB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_stats.zip
5.52 MB
MOD2156A49_S23_L002_R1_001_trimmed_dedup.bam.bai
3.28 MB
MOD2156A49_S23_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A49_S23_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_rc.tab.gz
228.85 kB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_tpm.tab.gz
424.48 kB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_cpm.tab.gz
315.25 kB
MOD2156A49_S23_L002_R1_001_trimmed_dedup_expressions.txt.gz
819.88 kB

Naive_semi_2

FASTQ file (single-end)
MOD2156A47_S21_L002_R1_001.fastq.gz
1.24 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A47_S21_L002_R1_001_fastqc.zip
404.07 kB
STAR
MOD2156A47_S21_L002_R1_001_unmapped.out.mate1.fastq.gz
106.09 MB
MOD2156A47_S21_L002_R1_001.bam.bai
3.58 MB
MOD2156A47_S21_L002_R1_001.bam
1.10 GB
MOD2156A47_S21_L002_R1_001_stats.txt
1.82 kB
MOD2156A47_S21_L002_R1_001_SJ.out.tab
7.22 MB
UMI-tools dedup
MOD2156A47_S21_L002_R1_001_trimmed_dedup.bam
1.06 GB
MOD2156A47_S21_L002_R1_001_trimmed_dedup.log
18.13 kB
MOD2156A47_S21_L002_R1_001_trimmed_dedup_stats.zip
5.52 MB
MOD2156A47_S21_L002_R1_001_trimmed_dedup.bam.bai
3.28 MB
MOD2156A47_S21_L002_R1_001_trimmed_stats.txt
395 B
Samtools idxstats
idxstat_report.txt
3.32 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.04 kB
MOD2156A47_S21_L002_R1_001_trimmed.fastq.gz
1.08 GB
fastqc
Directory
Subsample FASTQ (single-end)
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.fastq.gz
52.91 MB
fastqc
Directory
STAR
MOD2156A47_S21_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
32.96 MB
MOD2156A47_S21_L002_R1_001_trimmed.bam.bai
3.31 MB
MOD2156A47_S21_L002_R1_001_trimmed.bam
1.20 GB
MOD2156A47_S21_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A47_S21_L002_R1_001_trimmed_SJ.out.tab
5.81 MB
STAR
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.08 MB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.bam.bai
1.32 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.bam
833.66 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.84 kB
STAR
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.74 MB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A47_S21_L002_R1_001_trimmed_downsampled.bam
1.37 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A47_S21_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A47_S21_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.65 MB
MOD2156A47_S21_L002_R1_001_trimmed_dedup_rc.tab.gz
229.71 kB
MOD2156A47_S21_L002_R1_001_trimmed_dedup_tpm.tab.gz
431.06 kB
MOD2156A47_S21_L002_R1_001_trimmed_dedup_cpm.tab.gz
317.30 kB
MOD2156A47_S21_L002_R1_001_trimmed_dedup_expressions.txt.gz
829.44 kB

Epi_1

FASTQ file (single-end)
MOD2156A40_S14_L002_R1_001.fastq.gz
970.85 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A40_S14_L002_R1_001_fastqc.zip
406.39 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.01 kB
MOD2156A40_S14_L002_R1_001_trimmed.fastq.gz
828.56 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.30 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Subsample FASTQ (single-end)
MOD2156A40_S14_L002_R1_001_trimmed_downsampled.fastq.gz
51.87 MB
fastqc
Directory
STAR
MOD2156A40_S14_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
27.49 MB
MOD2156A40_S14_L002_R1_001_trimmed.bam.bai
3.21 MB
MOD2156A40_S14_L002_R1_001_trimmed.bam
1.01 GB
MOD2156A40_S14_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A40_S14_L002_R1_001_trimmed_SJ.out.tab
4.84 MB
STAR
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.85 MB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled.bam.bai
1.74 kB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled.bam
1.16 MB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.62 kB
STAR
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.71 MB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A40_S14_L002_R1_001_trimmed_downsampled.bam
1.62 kB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A40_S14_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A40_S14_L002_R1_001_trimmed_dedup.bam
908.37 MB
MOD2156A40_S14_L002_R1_001_trimmed_dedup.log
16.82 kB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_stats.zip
5.55 MB
MOD2156A40_S14_L002_R1_001_trimmed_dedup.bam.bai
3.19 MB
MOD2156A40_S14_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A40_S14_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_rc.tab.gz
226.71 kB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_tpm.tab.gz
418.96 kB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_cpm.tab.gz
306.08 kB
MOD2156A40_S14_L002_R1_001_trimmed_dedup_expressions.txt.gz
803.65 kB

Naive_1

FASTQ file (single-end)
MOD2156A37_S11_L002_R1_001.fastq.gz
1.45 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A37_S11_L002_R1_001_fastqc.zip
409.31 kB
STAR
MOD2156A37_S11_L002_R1_001_unmapped.out.mate1.fastq.gz
342.86 MB
MOD2156A37_S11_L002_R1_001.bam.bai
3.74 MB
MOD2156A37_S11_L002_R1_001.bam
1.14 GB
MOD2156A37_S11_L002_R1_001_stats.txt
1.82 kB
MOD2156A37_S11_L002_R1_001_SJ.out.tab
7.34 MB
Samtools idxstats
idxstat_report.txt
3.33 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.08 kB
MOD2156A37_S11_L002_R1_001_trimmed.fastq.gz
1.19 GB
fastqc
Directory
Subsample FASTQ (single-end)
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.fastq.gz
48.72 MB
fastqc
Directory
STAR
MOD2156A37_S11_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
46.36 MB
MOD2156A37_S11_L002_R1_001_trimmed.bam.bai
3.34 MB
MOD2156A37_S11_L002_R1_001_trimmed.bam
1.68 GB
MOD2156A37_S11_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A37_S11_L002_R1_001_trimmed_SJ.out.tab
6.02 MB
STAR
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
47.34 MB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.bam.bai
2.27 kB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.bam
1.66 MB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_SJ.out.tab
20.98 kB
STAR
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
48.54 MB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A37_S11_L002_R1_001_trimmed_downsampled.bam
3.67 kB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A37_S11_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A37_S11_L002_R1_001_trimmed_dedup.bam
1.50 GB
MOD2156A37_S11_L002_R1_001_trimmed_dedup.log
25.37 kB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_stats.zip
6.12 MB
MOD2156A37_S11_L002_R1_001_trimmed_dedup.bam.bai
3.31 MB
MOD2156A37_S11_L002_R1_001_trimmed_stats.txt
396 B
featureCounts
featureCounts_rc.txt.summary
363 B
MOD2156A37_S11_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.65 MB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_rc.tab.gz
232.92 kB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_tpm.tab.gz
463.03 kB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_cpm.tab.gz
323.80 kB
MOD2156A37_S11_L002_R1_001_trimmed_dedup_expressions.txt.gz
873.38 kB

Epi_semi_2

FASTQ file (single-end)
MOD2156A50_S24_L002_R1_001.fastq.gz
2.95 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A50_S24_L002_R1_001_fastqc.zip
411.15 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.13 kB
MOD2156A50_S24_L002_R1_001_trimmed.fastq.gz
2.54 GB
fastqc
Directory
UMI-tools dedup
MOD2156A50_S24_L002_R1_001_trimmed_dedup.bam
2.60 GB
MOD2156A50_S24_L002_R1_001_trimmed_dedup.log
40.71 kB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_stats.zip
6.81 MB
MOD2156A50_S24_L002_R1_001_trimmed_dedup.bam.bai
3.31 MB
MOD2156A50_S24_L002_R1_001_trimmed_stats.txt
396 B
Subsample FASTQ (single-end)
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.fastq.gz
50.56 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.34 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
STAR
MOD2156A50_S24_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
91.12 MB
MOD2156A50_S24_L002_R1_001_trimmed.bam.bai
3.41 MB
MOD2156A50_S24_L002_R1_001_trimmed.bam
2.97 GB
MOD2156A50_S24_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A50_S24_L002_R1_001_trimmed_SJ.out.tab
7.66 MB
STAR
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
49.80 MB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.bam.bai
1.29 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.bam
831.97 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.58 kB
STAR
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.39 MB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A50_S24_L002_R1_001_trimmed_downsampled.bam
2.44 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD2156A50_S24_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
364 B
MOD2156A50_S24_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.65 MB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_rc.tab.gz
238.44 kB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_tpm.tab.gz
477.80 kB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_cpm.tab.gz
345.12 kB
MOD2156A50_S24_L002_R1_001_trimmed_dedup_expressions.txt.gz
911.89 kB

Naive_semi_3

FASTQ file (single-end)
MOD2156A48_S22_L002_R1_001.fastq.gz
633.74 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A48_S22_L002_R1_001_fastqc.zip
409.88 kB
STAR
MOD2156A48_S22_L002_R1_001_unmapped.out.mate1.fastq.gz
62.18 MB
MOD2156A48_S22_L002_R1_001.bam.bai
2.60 MB
MOD2156A48_S22_L002_R1_001.bam
583.34 MB
MOD2156A48_S22_L002_R1_001_stats.txt
1.82 kB
MOD2156A48_S22_L002_R1_001_SJ.out.tab
5.33 MB
Samtools idxstats
idxstat_report.txt
3.29 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.02 kB
MOD2156A48_S22_L002_R1_001_trimmed.fastq.gz
545.04 MB
fastqc
Directory
STAR
MOD2156A48_S22_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
17.43 MB
MOD2156A48_S22_L002_R1_001_trimmed.bam.bai
3.14 MB
MOD2156A48_S22_L002_R1_001_trimmed.bam
652.58 MB
MOD2156A48_S22_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A48_S22_L002_R1_001_trimmed_SJ.out.tab
4.75 MB
Subsample FASTQ (single-end)
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.fastq.gz
52.57 MB
fastqc
Directory
STAR
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.48 MB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.bam.bai
1.62 kB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.bam
1.06 MB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_SJ.out.tab
17.69 kB
STAR
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.40 MB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A48_S22_L002_R1_001_trimmed_downsampled.bam
1.89 kB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A48_S22_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A48_S22_L002_R1_001_trimmed_dedup.bam
596.75 MB
MOD2156A48_S22_L002_R1_001_trimmed_dedup.log
11.34 kB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_stats.zip
4.53 MB
MOD2156A48_S22_L002_R1_001_trimmed_dedup.bam.bai
3.13 MB
MOD2156A48_S22_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A48_S22_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_rc.tab.gz
224.56 kB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_tpm.tab.gz
410.90 kB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_cpm.tab.gz
298.64 kB
MOD2156A48_S22_L002_R1_001_trimmed_dedup_expressions.txt.gz
787.20 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB

Epi_3

FASTQ file (single-end)
MOD2156A42_S16_L002_R1_001.fastq.gz
1.13 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A42_S16_L002_R1_001_fastqc.zip
405.86 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.06 kB
MOD2156A42_S16_L002_R1_001_trimmed.fastq.gz
1003.98 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Subsample FASTQ (single-end)
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.fastq.gz
52.56 MB
fastqc
Directory
STAR
MOD2156A42_S16_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
33.64 MB
MOD2156A42_S16_L002_R1_001_trimmed.bam.bai
3.28 MB
MOD2156A42_S16_L002_R1_001_trimmed.bam
1.17 GB
MOD2156A42_S16_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A42_S16_L002_R1_001_trimmed_SJ.out.tab
5.18 MB
STAR
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.61 MB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.bam.bai
1.60 kB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.bam
1.00 MB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_SJ.out.tab
14.30 kB
STAR
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.38 MB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A42_S16_L002_R1_001_trimmed_downsampled.bam
1.62 kB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A42_S16_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A42_S16_L002_R1_001_trimmed_dedup.bam
1.03 GB
MOD2156A42_S16_L002_R1_001_trimmed_dedup.log
18.79 kB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_stats.zip
5.67 MB
MOD2156A42_S16_L002_R1_001_trimmed_dedup.bam.bai
3.26 MB
MOD2156A42_S16_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
362 B
MOD2156A42_S16_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_rc.tab.gz
228.16 kB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_tpm.tab.gz
425.22 kB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_cpm.tab.gz
311.18 kB
MOD2156A42_S16_L002_R1_001_trimmed_dedup_expressions.txt.gz
816.02 kB

Diff_1

FASTQ file (single-end)
MOD2156A43_S17_L002_R1_001.fastq.gz
958.57 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A43_S17_L002_R1_001_fastqc.zip
400.27 kB
Subsample FASTQ (single-end)
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.fastq.gz
52.63 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.30 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.04 kB
MOD2156A43_S17_L002_R1_001_trimmed.fastq.gz
823.29 MB
fastqc
Directory
STAR
MOD2156A43_S17_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
29.80 MB
MOD2156A43_S17_L002_R1_001_trimmed.bam.bai
3.20 MB
MOD2156A43_S17_L002_R1_001_trimmed.bam
996.91 MB
MOD2156A43_S17_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A43_S17_L002_R1_001_trimmed_SJ.out.tab
4.88 MB
STAR
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.84 MB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.bam.bai
1.35 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.bam
851.47 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.99 kB
STAR
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.47 MB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A43_S17_L002_R1_001_trimmed_downsampled.bam
1.59 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A43_S17_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A43_S17_L002_R1_001_trimmed_dedup.bam
881.09 MB
MOD2156A43_S17_L002_R1_001_trimmed_dedup.log
16.21 kB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_stats.zip
5.41 MB
MOD2156A43_S17_L002_R1_001_trimmed_dedup.bam.bai
3.18 MB
MOD2156A43_S17_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A43_S17_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_rc.tab.gz
226.77 kB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_tpm.tab.gz
419.96 kB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_cpm.tab.gz
305.78 kB
MOD2156A43_S17_L002_R1_001_trimmed_dedup_expressions.txt.gz
804.89 kB

Diff_2

FASTQ file (single-end)
MOD2156A44_S18_L002_R1_001.fastq.gz
868.15 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A44_S18_L002_R1_001_fastqc.zip
404.80 kB
Subsample FASTQ (single-end)
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.fastq.gz
53.02 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.02 kB
MOD2156A44_S18_L002_R1_001_trimmed.fastq.gz
750.87 MB
fastqc
Directory
STAR
MOD2156A44_S18_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
26.71 MB
MOD2156A44_S18_L002_R1_001_trimmed.bam.bai
3.06 MB
MOD2156A44_S18_L002_R1_001_trimmed.bam
897.43 MB
MOD2156A44_S18_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A44_S18_L002_R1_001_trimmed_SJ.out.tab
4.73 MB
STAR
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.07 MB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.bam.bai
1.41 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.bam
897.30 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_SJ.out.tab
14.93 kB
STAR
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.85 MB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A44_S18_L002_R1_001_trimmed_downsampled.bam
1.39 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A44_S18_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A44_S18_L002_R1_001_trimmed_dedup.bam
796.25 MB
MOD2156A44_S18_L002_R1_001_trimmed_dedup.log
14.73 kB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_stats.zip
5.21 MB
MOD2156A44_S18_L002_R1_001_trimmed_dedup.bam.bai
3.04 MB
MOD2156A44_S18_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A44_S18_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_rc.tab.gz
225.83 kB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_tpm.tab.gz
412.87 kB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_cpm.tab.gz
302.10 kB
MOD2156A44_S18_L002_R1_001_trimmed_dedup_expressions.txt.gz
793.59 kB

Diff_semi_1

STAR
MOD2156A52_S26_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
35.44 MB
MOD2156A52_S26_L002_R1_001_trimmed.bam.bai
3.15 MB
MOD2156A52_S26_L002_R1_001_trimmed.bam
939.18 MB
MOD2156A52_S26_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A52_S26_L002_R1_001_trimmed_SJ.out.tab
4.59 MB
featureCounts
featureCounts_rc.txt.summary
355 B
MOD2156A52_S26_L002_R1_001_trimmed_featureCounts_rc.txt.gz
3.64 MB
MOD2156A52_S26_L002_R1_001_trimmed_rc.tab.gz
230.00 kB
MOD2156A52_S26_L002_R1_001_trimmed_tpm.tab.gz
445.49 kB
MOD2156A52_S26_L002_R1_001_trimmed_cpm.tab.gz
313.82 kB
MOD2156A52_S26_L002_R1_001_trimmed_expressions.txt.gz
843.29 kB
FASTQ file (single-end)
MOD2156A52_S26_L002_R1_001.fastq.gz
1006.10 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A52_S26_L002_R1_001_fastqc.zip
413.60 kB
Subsample FASTQ (single-end)
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.fastq.gz
51.26 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.31 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.04 kB
MOD2156A52_S26_L002_R1_001_trimmed.fastq.gz
847.94 MB
fastqc
Directory
STAR
MOD2156A52_S26_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
32.04 MB
MOD2156A52_S26_L002_R1_001_trimmed.bam.bai
3.27 MB
MOD2156A52_S26_L002_R1_001_trimmed.bam
1009.34 MB
MOD2156A52_S26_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A52_S26_L002_R1_001_trimmed_SJ.out.tab
4.91 MB
STAR
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.92 MB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.bam.bai
9.09 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.bam
6.66 MB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_SJ.out.tab
19.05 kB
STAR
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.08 MB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A52_S26_L002_R1_001_trimmed_downsampled.bam
1.39 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_dedup.bam
1.39 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_dedup.log
4.01 kB
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_dedup_stats.zip
836 B
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_dedup.bam.bai
416 B
MOD2156A52_S26_L002_R1_001_trimmed_downsampled_stats.txt
377 B

Diff_3

featureCounts
featureCounts_rc.txt.summary
357 B
MOD2156A45_S19_L002_R1_001_trimmed_featureCounts_rc.txt.gz
3.65 MB
MOD2156A45_S19_L002_R1_001_trimmed_rc.tab.gz
232.82 kB
MOD2156A45_S19_L002_R1_001_trimmed_tpm.tab.gz
455.00 kB
MOD2156A45_S19_L002_R1_001_trimmed_cpm.tab.gz
322.06 kB
MOD2156A45_S19_L002_R1_001_trimmed_expressions.txt.gz
863.68 kB
STAR
MOD2156A45_S19_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
46.25 MB
MOD2156A45_S19_L002_R1_001_trimmed.bam.bai
3.34 MB
MOD2156A45_S19_L002_R1_001_trimmed.bam
1.22 GB
MOD2156A45_S19_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A45_S19_L002_R1_001_trimmed_SJ.out.tab
4.90 MB
featureCounts
featureCounts_rc.txt.summary
357 B
MOD2156A45_S19_L002_R1_001_trimmed_featureCounts_rc.txt.gz
3.65 MB
MOD2156A45_S19_L002_R1_001_trimmed_rc.tab.gz
232.73 kB
MOD2156A45_S19_L002_R1_001_trimmed_tpm.tab.gz
457.16 kB
MOD2156A45_S19_L002_R1_001_trimmed_cpm.tab.gz
323.99 kB
MOD2156A45_S19_L002_R1_001_trimmed_expressions.txt.gz
867.24 kB
FASTQ file (single-end)
MOD2156A45_S19_L002_R1_001.fastq.gz
1.28 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A45_S19_L002_R1_001_fastqc.zip
411.54 kB
Samtools idxstats
idxstat_report.txt
3.31 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.05 kB
MOD2156A45_S19_L002_R1_001_trimmed.fastq.gz
1.10 GB
fastqc
Directory
STAR
MOD2156A45_S19_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
38.83 MB
MOD2156A45_S19_L002_R1_001_trimmed.bam.bai
3.38 MB
MOD2156A45_S19_L002_R1_001_trimmed.bam
1.34 GB
MOD2156A45_S19_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A45_S19_L002_R1_001_trimmed_SJ.out.tab
5.25 MB
Subsample FASTQ (single-end)
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.fastq.gz
51.79 MB
fastqc
Directory
STAR
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.63 MB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.bam.bai
344 B
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.bam
1.50 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
49.91 MB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.bam.bai
2.37 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled.bam
1.67 MB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_SJ.out.tab
15.27 kB
UMI-tools dedup
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_dedup.bam
1.60 MB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_dedup.log
4.03 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_dedup_stats.zip
110.31 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_dedup.bam.bai
2.07 kB
MOD2156A45_S19_L002_R1_001_trimmed_downsampled_stats.txt
386 B

Diff_semi_2

FASTQ file (single-end)
MOD2156A53_S27_L002_R1_001.fastq.gz
427.65 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A53_S27_L002_R1_001_fastqc.zip
407.76 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1008 B
MOD2156A53_S27_L002_R1_001_trimmed.fastq.gz
367.04 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.28 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
STAR
MOD2156A53_S27_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
14.76 MB
MOD2156A53_S27_L002_R1_001_trimmed.bam.bai
2.88 MB
MOD2156A53_S27_L002_R1_001_trimmed.bam
454.15 MB
MOD2156A53_S27_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD2156A53_S27_L002_R1_001_trimmed_SJ.out.tab
4.17 MB
Subsample FASTQ (single-end)
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.fastq.gz
52.59 MB
fastqc
Directory
UMI-tools dedup
MOD2156A53_S27_L002_R1_001_trimmed_dedup.bam
417.48 MB
MOD2156A53_S27_L002_R1_001_trimmed_dedup.log
8.83 kB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_stats.zip
3.97 MB
MOD2156A53_S27_L002_R1_001_trimmed_dedup.bam.bai
2.88 MB
MOD2156A53_S27_L002_R1_001_trimmed_stats.txt
393 B
MOD2156A53_S27_L002_R1_001_trimmed_dedup.bw
19.48 MB
STAR
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.90 MB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.bam.bai
2.20 kB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.bam
1.44 MB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_SJ.out.tab
16.67 kB
STAR
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.41 MB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A53_S27_L002_R1_001_trimmed_downsampled.bam
1.46 kB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A53_S27_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
360 B
MOD2156A53_S27_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_rc.tab.gz
221.03 kB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_tpm.tab.gz
392.11 kB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_cpm.tab.gz
285.27 kB
MOD2156A53_S27_L002_R1_001_trimmed_dedup_expressions.txt.gz
753.08 kB

Diff_semi_3

FASTQ file (single-end)
MOD2156A54_S28_L002_R1_001.fastq.gz
961.40 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A54_S28_L002_R1_001_fastqc.zip
406.18 kB
Subsample FASTQ (single-end)
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.fastq.gz
52.26 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.04 kB
MOD2156A54_S28_L002_R1_001_trimmed.fastq.gz
829.61 MB
fastqc
Directory
STAR
MOD2156A54_S28_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
28.77 MB
MOD2156A54_S28_L002_R1_001_trimmed.bam.bai
3.24 MB
MOD2156A54_S28_L002_R1_001_trimmed.bam
985.57 MB
MOD2156A54_S28_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A54_S28_L002_R1_001_trimmed_SJ.out.tab
5.15 MB
STAR
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
51.54 MB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.bam.bai
1.20 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.bam
716.80 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_SJ.out.tab
14.73 kB
STAR
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
52.10 MB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A54_S28_L002_R1_001_trimmed_downsampled.bam
1.64 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A54_S28_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A54_S28_L002_R1_001_trimmed_dedup.bam
892.11 MB
MOD2156A54_S28_L002_R1_001_trimmed_dedup.log
15.34 kB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_stats.zip
5.13 MB
MOD2156A54_S28_L002_R1_001_trimmed_dedup.bam.bai
3.23 MB
MOD2156A54_S28_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A54_S28_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_rc.tab.gz
227.35 kB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_tpm.tab.gz
419.91 kB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_cpm.tab.gz
307.87 kB
MOD2156A54_S28_L002_R1_001_trimmed_dedup_expressions.txt.gz
806.40 kB

Epi_2

FASTQ file (single-end)
MOD2156A41_S15_L002_R1_001.fastq.gz
809.42 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD2156A41_S15_L002_R1_001_fastqc.zip
404.13 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.02 kB
MOD2156A41_S15_L002_R1_001_trimmed.fastq.gz
679.22 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD2156A41_S15_L002_R1_001_trimmed_downsampled.fastq.gz
50.35 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.30 kB
STAR
MOD2156A41_S15_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
26.25 MB
MOD2156A41_S15_L002_R1_001_trimmed.bam.bai
3.38 MB
MOD2156A41_S15_L002_R1_001_trimmed.bam
918.62 MB
MOD2156A41_S15_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD2156A41_S15_L002_R1_001_trimmed_SJ.out.tab
4.57 MB
STAR
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
48.71 MB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled.bam.bai
2.37 kB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled.bam
1.59 MB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_SJ.out.tab
16.33 kB
STAR
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
50.18 MB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD2156A41_S15_L002_R1_001_trimmed_downsampled.bam
1.82 kB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD2156A41_S15_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD2156A41_S15_L002_R1_001_trimmed_dedup.bam
828.57 MB
MOD2156A41_S15_L002_R1_001_trimmed_dedup.log
15.01 kB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_stats.zip
5.15 MB
MOD2156A41_S15_L002_R1_001_trimmed_dedup.bam.bai
3.37 MB
MOD2156A41_S15_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
361 B
MOD2156A41_S15_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_rc.tab.gz
226.27 kB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_tpm.tab.gz
422.46 kB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_cpm.tab.gz
302.19 kB
MOD2156A41_S15_L002_R1_001_trimmed_dedup_expressions.txt.gz
804.64 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB