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Folder iconMETTL3 WT and KO mESC Mock iCLIP

Patrick Toolan-Kerr
Feb. 8, 2021
Mock iCLIP from mESC WT and KO cells grown in N2B27+FGF for 72 hrs.

No Sample

featureCounts
featureCounts_rc.txt.summary
386 B
results
Directory
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.64 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_rc.tab.gz
221.66 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
437.47 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
274.80 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
791.92 kB
FASTQ file (single-end)
input-esc-wt-fgf-rep3-20201119-ptk_trimmed.fastq.gz
439.66 MB
fastqc
Directory
stderr.txt
1.48 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_fastqc.zip
449.93 kB
FASTQ file (single-end)
input-esc-wt-fgf-rep2-20201119-ptk_trimmed.fastq.gz
765.69 MB
fastqc
Directory
stderr.txt
1.48 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_fastqc.zip
446.03 kB
FASTQ file (single-end)
input-esc-wt-fgf-rep1-20201119-ptk_trimmed.fastq.gz
332.57 MB
fastqc
Directory
stderr.txt
1.48 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_fastqc.zip
450.00 kB
FASTQ file (single-end)
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed.fastq.gz
798.99 MB
fastqc
Directory
stderr.txt
1.76 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_fastqc.zip
440.52 kB
FASTQ file (single-end)
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed.fastq.gz
285.93 MB
fastqc
Directory
stderr.txt
1.67 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_fastqc.zip
445.20 kB
FASTQ file (single-end)
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed.fastq.gz
842.15 MB
fastqc
Directory
stderr.txt
1.76 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_fastqc.zip
446.58 kB
Samtools idxstats
idxstat_report.txt
3.28 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed.fastq.gz
733.89 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_statistics.txt.gz
1020 B
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.33 kB
Samtools idxstats
idxstat_report.txt
3.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
Samtools idxstats
idxstat_report.txt
3.33 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
Samtools idxstats
idxstat_report.txt
3.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed.fastq.gz
262.77 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_statistics.txt.gz
791 B
fastqc
Directory
BBDuk (single-end)
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed.fastq.gz
305.21 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_statistics.txt.gz
793 B
fastqc
Directory
BBDuk (single-end)
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed.fastq.gz
406.12 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_statistics.txt.gz
845 B
fastqc
Directory
BBDuk (single-end)
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed.fastq.gz
706.89 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_statistics.txt.gz
934 B
fastqc
Directory
BBDuk (single-end)
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed.fastq.gz
775.08 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_statistics.txt.gz
988 B
fastqc
Directory
STAR
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
62.89 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed.bam.bai
3.10 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed.bam
412.00 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_stats.txt
1.81 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_SJ.out.tab
1.51 MB
Subsample FASTQ (single-end)
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
39.24 MB
fastqc
Directory
Subsample FASTQ (single-end)
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
40.48 MB
fastqc
Directory
STAR
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
90.46 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed.bam.bai
3.13 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed.bam
528.73 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_stats.txt
1.81 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_SJ.out.tab
1.77 MB
STAR
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
152.13 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed.bam.bai
2.50 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed.bam
1017.82 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_stats.txt
1.82 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_SJ.out.tab
3.29 MB
Subsample FASTQ (single-end)
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
41.16 MB
fastqc
Directory
STAR
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
153.66 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed.bam.bai
2.90 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed.bam
929.04 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_stats.txt
1.82 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_SJ.out.tab
2.62 MB
Subsample FASTQ (single-end)
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
40.76 MB
fastqc
Directory
Subsample FASTQ (single-end)
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
41.03 MB
fastqc
Directory
STAR
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
61.04 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed.bam.bai
3.12 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed.bam
357.18 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_stats.txt
1.81 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_SJ.out.tab
1.60 MB
STAR
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
167.36 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed.bam.bai
2.52 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed.bam
1.03 GB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_stats.txt
1.82 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_SJ.out.tab
3.20 MB
Subsample FASTQ (single-end)
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
41.00 MB
fastqc
Directory
featureCounts
results
Directory
featureCounts_rc.txt.summary
375 B
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.63 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_rc.tab.gz
210.50 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
369.29 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
240.91 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
675.77 kB
STAR
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
12.74 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
12.09 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam
25.35 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
25.88 kB
STAR
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
39.77 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam
5.84 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
375 B
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.63 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_rc.tab.gz
212.39 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
378.04 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
246.62 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
692.02 kB
STAR
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
13.52 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
13.04 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam
25.77 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
31.49 kB
STAR
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.01 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam
6.95 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
0 B
STAR
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
20.20 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
12.84 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam
20.27 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
38.37 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
386 B
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.64 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_rc.tab.gz
221.98 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
439.90 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
277.40 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
796.37 kB
STAR
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
13.98 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
13.37 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam
25.51 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
32.28 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
376 B
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.63 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_rc.tab.gz
217.70 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
406.41 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
262.61 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
742.48 kB
STAR
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.68 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam
10.89 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
40 B
STAR
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
18.30 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
13.59 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam
21.94 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
37.42 kB
STAR
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.29 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam
7.01 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
385 B
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.63 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_rc.tab.gz
211.48 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
377.88 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
242.42 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
687.53 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
STAR
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
19.07 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
12.76 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam
21.02 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
34.88 kB
STAR
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.52 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam
8.71 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
0 B
STAR
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.55 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam
8.89 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
40 B
DESeq2
de_file.tab.gz
530.97 kB
diffexp_deseq2.tab.gz
785.66 kB
count_matrix.tab.gz
155.97 kB
Gene set
Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_up.tab.gz
1.48 kB
Gene set
Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_down.tab.gz
1.58 kB
Gene set
Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_all.tab.gz
40.06 kB
Gene set
mart_export (3).tab.gz
498 B
Gene set
mart_export (4).tab.gz
263 B

input-esc-wt-fgf-rep1-20201119-ptk_trimmed

FASTQ file (single-end)
input-esc-wt-fgf-rep1-20201119-ptk_trimmed.fastq.gz
332.57 MB
fastqc
Directory
stderr.txt
1.48 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_fastqc.zip
450.00 kB
Samtools idxstats
idxstat_report.txt
3.28 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed.fastq.gz
305.21 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_statistics.txt.gz
793 B
fastqc
Directory
STAR
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
62.89 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed.bam.bai
3.10 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed.bam
412.00 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_stats.txt
1.81 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_SJ.out.tab
1.51 MB
Subsample FASTQ (single-end)
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
39.24 MB
fastqc
Directory
featureCounts
results
Directory
featureCounts_rc.txt.summary
375 B
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.63 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_rc.tab.gz
210.50 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
369.29 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
240.91 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
675.77 kB
STAR
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
12.74 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
12.09 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam
25.35 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
25.88 kB
STAR
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39.77 MB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam
5.84 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-wt-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
0 B

input-esc-wt-fgf-rep2-20201119-ptk_trimmed

FASTQ file (single-end)
input-esc-wt-fgf-rep2-20201119-ptk_trimmed.fastq.gz
765.69 MB
fastqc
Directory
stderr.txt
1.48 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_fastqc.zip
446.03 kB
Samtools idxstats
idxstat_report.txt
3.31 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed.fastq.gz
706.89 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_statistics.txt.gz
934 B
fastqc
Directory
STAR
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153.66 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed.bam.bai
2.90 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed.bam
929.04 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_stats.txt
1.82 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_SJ.out.tab
2.62 MB
Subsample FASTQ (single-end)
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
40.76 MB
fastqc
Directory
STAR
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
13.98 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
13.37 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam
25.51 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
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featureCounts
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Directory
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376 B
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.63 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_rc.tab.gz
217.70 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
406.41 kB
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262.61 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
742.48 kB
STAR
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.29 MB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam
7.01 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-wt-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
0 B

input-esc-wt-fgf-rep3-20201119-ptk_trimmed

FASTQ file (single-end)
input-esc-wt-fgf-rep3-20201119-ptk_trimmed.fastq.gz
439.66 MB
fastqc
Directory
stderr.txt
1.48 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_fastqc.zip
449.93 kB
Samtools idxstats
idxstat_report.txt
3.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed.fastq.gz
406.12 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_statistics.txt.gz
845 B
fastqc
Directory
Subsample FASTQ (single-end)
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
40.48 MB
fastqc
Directory
STAR
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
90.46 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed.bam.bai
3.13 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed.bam
528.73 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_stats.txt
1.81 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_SJ.out.tab
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featureCounts
results
Directory
featureCounts_rc.txt.summary
375 B
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.63 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_rc.tab.gz
212.39 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
378.04 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
246.62 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
692.02 kB
STAR
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
13.52 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
13.04 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam
25.77 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
31.49 kB
STAR
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.01 MB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam
6.95 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-wt-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
0 B

input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed

FASTQ file (single-end)
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed.fastq.gz
285.93 MB
fastqc
Directory
stderr.txt
1.67 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_fastqc.zip
445.20 kB
Samtools idxstats
idxstat_report.txt
3.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed.fastq.gz
262.77 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_statistics.txt.gz
791 B
fastqc
Directory
Subsample FASTQ (single-end)
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
41.03 MB
fastqc
Directory
STAR
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
61.04 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed.bam.bai
3.12 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed.bam
357.18 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_stats.txt
1.81 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_SJ.out.tab
1.60 MB
STAR
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
18.30 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
13.59 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam
21.94 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
37.42 kB
featureCounts
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Directory
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385 B
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.63 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_rc.tab.gz
211.48 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
377.88 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
242.42 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
687.53 kB
STAR
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.55 MB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled.bam
8.89 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-mettl3-ko-f4-fgf-rep1-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
40 B

input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed

FASTQ file (single-end)
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed.fastq.gz
842.15 MB
fastqc
Directory
stderr.txt
1.76 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_fastqc.zip
446.58 kB
Samtools idxstats
idxstat_report.txt
3.33 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed.fastq.gz
775.08 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_statistics.txt.gz
988 B
fastqc
Directory
STAR
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
167.36 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed.bam.bai
2.52 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed.bam
1.03 GB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_stats.txt
1.82 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_SJ.out.tab
3.20 MB
Subsample FASTQ (single-end)
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
41.00 MB
fastqc
Directory
featureCounts
results
Directory
featureCounts_rc.txt.summary
386 B
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.64 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_rc.tab.gz
221.66 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
437.47 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
274.80 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
791.92 kB
STAR
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
19.07 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
12.76 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam
21.02 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
34.88 kB
STAR
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.52 MB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled.bam
8.71 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-mettl3-ko-f4-fgf-rep3-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
0 B

input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed

FASTQ file (single-end)
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed.fastq.gz
798.99 MB
fastqc
Directory
stderr.txt
1.76 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_fastqc.zip
440.52 kB
BBDuk (single-end)
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed.fastq.gz
733.89 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_statistics.txt.gz
1020 B
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.33 kB
STAR
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_unmapped.out.mate1.fastq.gz
152.13 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed.bam.bai
2.50 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed.bam
1017.82 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_stats.txt
1.82 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_SJ.out.tab
3.29 MB
Subsample FASTQ (single-end)
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.fastq.gz
41.16 MB
fastqc
Directory
STAR
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
20.20 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
12.84 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam
20.27 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.79 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
38.37 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
386 B
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_featureCounts_rc.txt.gz
3.64 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_rc.tab.gz
221.98 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_tpm.tab.gz
439.90 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_cpm.tab.gz
277.40 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_expressions.txt.gz
796.37 kB
STAR
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
41.68 MB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam.bai
416 B
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled.bam
10.89 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_stats.txt
1.78 kB
input-esc-mettl3-ko-f4-fgf-rep2-20201119-ptk_trimmed_preprocessed_downsampled_SJ.out.tab
40 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB