MM RNAseq KMSBM 1st analysis

Copy of KMS BM only

Samtools idxstats

idxstat_report.txt

5.96 kB

STAR

10_R1_001_preprocessed_downsampled.bam.bai

336 B

10_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.58 MB

10_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

63.33 MB

10_R1_001_preprocessed_downsampled.bam

1.38 MB

10_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

10_R1_001_preprocessed_downsampled_SJ.out.tab

102 B

FASTQ file (paired-end)

fastqc

Directory

10_R2_001.fastq.gz

2.44 GB

10_R2_001_fastqc.zip

815.75 kB

10_R1_001.fastq.gz

2.27 GB

stderr.txt

1.67 kB

10_R1_001_fastqc.zip

813.74 kB

BBDuk (paired-end)

fastqc

Directory

10_R1_001_preprocessed.fastq.gz

1.71 GB

10_R1_001_statistics.txt.gz

1.32 kB

10_R2_001_preprocessed.fastq.gz

1.73 GB

STAR

10_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

30.18 MB

10_R1_001_preprocessed_stats.txt

1.82 kB

10_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

30.79 MB

10_R1_001_preprocessed.bam.bai

3.16 MB

10_R1_001_preprocessed.bam

2.88 GB

10_R1_001_preprocessed_SJ.out.tab

8.48 MB

Subsample FASTQ (paired-end)

fastqc

Directory

10_R1_001_preprocessed_downsampled.fastq.gz

64.03 MB

10_R2_001_preprocessed_downsampled.fastq.gz

64.83 MB

featureCounts

10_R1_001_preprocessed_cpm.tab.gz

367.00 kB

10_R1_001_preprocessed_tpm.tab.gz

472.89 kB

10_R1_001_preprocessed_expressions.txt.gz

930.66 kB

10_R1_001_preprocessed_rc.tab.gz

255.63 kB

featureCounts_rc.txt.summary

345 B

10_R1_001_preprocessed_featureCounts_rc.txt.gz

4.75 MB

results

Directory

STAR

10_R1_001_preprocessed_downsampled.bam.bai

592 B

10_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

64.32 MB

10_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

10_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.56 MB

10_R1_001_preprocessed_downsampled_SJ.out.tab

4.12 kB

10_R1_001_preprocessed_downsampled.bam

206.46 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.24 MB

Copy of KMS12-BM untreated

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

featureCounts

results

Directory

sample7_R1_001_preprocessed_rc.tab.gz

252.04 kB

sample7_R1_001_preprocessed_tpm.tab.gz

422.10 kB

featureCounts_rc.txt.summary

350 B

sample7_R1_001_preprocessed_cpm.tab.gz

288.41 kB

sample7_R1_001_preprocessed_featureCounts_rc.txt.gz

4.44 MB

sample7_R1_001_preprocessed_expressions.txt.gz

1.17 MB

sample7_R1_001_preprocessed_fpkm.tab.gz

423.06 kB

FASTQ file (paired-end)

sample7_R1_001.fastq.gz

2.29 GB

fastqc

Directory

sample7_R2_001_fastqc.zip

808.92 kB

stderr.txt

1.75 kB

sample7_R1_001_fastqc.zip

801.88 kB

sample7_R2_001.fastq.gz

2.40 GB

Samtools idxstats

idxstat_report.txt

4.09 kB

BBDuk (paired-end)

sample7_R1_001_statistics.txt.gz

1.18 kB

fastqc

Directory

sample7_R1_001_preprocessed.fastq.gz

1.64 GB

sample7_R2_001_preprocessed.fastq.gz

1.64 GB

Subsample FASTQ (paired-end)

fastqc

Directory

sample7_R2_001_preprocessed_downsampled.fastq.gz

56.75 MB

sample7_R1_001_preprocessed_downsampled.fastq.gz

56.96 MB

STAR

sample7_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

39.44 MB

sample7_R1_001_preprocessed.bam.bai

3.61 MB

sample7_R1_001_preprocessed.bam

3.44 GB

sample7_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

38.68 MB

sample7_R1_001_preprocessed_SJ.out.tab

8.67 MB

sample7_R1_001_preprocessed_stats.txt

1.82 kB

STAR

sample7_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.44 MB

sample7_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

55.23 MB

sample7_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

sample7_R1_001_preprocessed_downsampled.bam

1.90 MB

sample7_R1_001_preprocessed_downsampled.bam.bai

336 B

sample7_R1_001_preprocessed_downsampled_SJ.out.tab

468 B

STAR

sample7_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.45 MB

sample7_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

56.23 MB

sample7_R1_001_preprocessed_downsampled.bam.bai

1.02 kB

sample7_R1_001_preprocessed_downsampled.bam

335.08 kB

sample7_R1_001_preprocessed_downsampled_SJ.out.tab

6.30 kB

sample7_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

Copy of KMS BM + UT

Samtools idxstats

idxstat_report.txt

5.95 kB

FASTQ file (paired-end)

fastqc

Directory

11_R2_001_fastqc.zip

814.30 kB

11_R2_001.fastq.gz

2.39 GB

11_R1_001.fastq.gz

2.23 GB

stderr.txt

1.67 kB

11_R1_001_fastqc.zip

813.98 kB

BBDuk (paired-end)

fastqc

Directory

11_R1_001_statistics.txt.gz

1.31 kB

11_R1_001_preprocessed.fastq.gz

1.67 GB

11_R2_001_preprocessed.fastq.gz

1.69 GB

STAR

11_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

30.46 MB

11_R1_001_preprocessed.bam

2.76 GB

11_R1_001_preprocessed_stats.txt

1.82 kB

11_R1_001_preprocessed.bam.bai

3.17 MB

11_R1_001_preprocessed_SJ.out.tab

8.42 MB

11_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

29.91 MB

Subsample FASTQ (paired-end)

fastqc

Directory

11_R2_001_preprocessed_downsampled.fastq.gz

64.93 MB

11_R1_001_preprocessed_downsampled.fastq.gz

64.25 MB

featureCounts

11_R1_001_preprocessed_expressions.txt.gz

930.92 kB

featureCounts_rc.txt.summary

345 B

11_R1_001_preprocessed_rc.tab.gz

255.23 kB

11_R1_001_preprocessed_featureCounts_rc.txt.gz

4.75 MB

11_R1_001_preprocessed_cpm.tab.gz

365.47 kB

11_R1_001_preprocessed_tpm.tab.gz

474.50 kB

results

Directory

STAR

11_R1_001_preprocessed_downsampled.bam

1.03 MB

11_R1_001_preprocessed_downsampled_SJ.out.tab

206 B

11_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

63.72 MB

11_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

11_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.08 MB

11_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

11_R1_001_preprocessed_downsampled.bam.bai

472 B

11_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

11_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

64.44 MB

11_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.79 MB

11_R1_001_preprocessed_downsampled.bam

202.26 kB

11_R1_001_preprocessed_downsampled_SJ.out.tab

4.97 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.24 MB

Copy of KMS BM + CART

FASTQ file (paired-end)

fastqc

Directory

12_R1_001.fastq.gz

2.24 GB

12_R2_001_fastqc.zip

812.71 kB

12_R1_001_fastqc.zip

809.98 kB

12_R2_001.fastq.gz

2.41 GB

stderr.txt

1.67 kB

BBDuk (paired-end)

fastqc

Directory

12_R2_001_preprocessed.fastq.gz

1.70 GB

12_R1_001_preprocessed.fastq.gz

1.68 GB

12_R1_001_statistics.txt.gz

1.38 kB

STAR

12_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

33.97 MB

12_R1_001_preprocessed_stats.txt

1.82 kB

12_R1_001_preprocessed.bam

2.98 GB

12_R1_001_preprocessed_SJ.out.tab

8.82 MB

12_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

33.18 MB

12_R1_001_preprocessed.bam.bai

3.44 MB

Subsample FASTQ (paired-end)

fastqc

Directory

12_R1_001_preprocessed_downsampled.fastq.gz

64.60 MB

12_R2_001_preprocessed_downsampled.fastq.gz

65.67 MB

featureCounts

featureCounts_rc.txt.summary

345 B

12_R1_001_preprocessed_expressions.txt.gz

958.77 kB

12_R1_001_preprocessed_cpm.tab.gz

368.74 kB

12_R1_001_preprocessed_rc.tab.gz

256.79 kB

12_R1_001_preprocessed_tpm.tab.gz

495.85 kB

results

Directory

12_R1_001_preprocessed_featureCounts_rc.txt.gz

4.75 MB

Samtools idxstats

idxstat_report.txt

5.96 kB

STAR

12_R1_001_preprocessed_downsampled.bam.bai

336 B

12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.60 MB

12_R1_001_preprocessed_downsampled.bam

2.14 MB

12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

63.59 MB

12_R1_001_preprocessed_downsampled_SJ.out.tab

451 B

12_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

STAR

12_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

12_R1_001_preprocessed_downsampled.bam.bai

720 B

12_R1_001_preprocessed_downsampled_SJ.out.tab

5.07 kB

12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

65.16 MB

12_R1_001_preprocessed_downsampled.bam

282.11 kB

12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.13 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.24 MB

Copy of KMS12-BM + CART

featureCounts

results

Directory

sample9_R1_001_preprocessed_rc.tab.gz

252.99 kB

sample9_R1_001_preprocessed_cpm.tab.gz

290.87 kB

featureCounts_rc.txt.summary

351 B

sample9_R1_001_preprocessed_featureCounts_rc.txt.gz

4.44 MB

sample9_R1_001_preprocessed_fpkm.tab.gz

428.43 kB

sample9_R1_001_preprocessed_expressions.txt.gz

1.18 MB

sample9_R1_001_preprocessed_tpm.tab.gz

427.61 kB

BBDuk (paired-end)

fastqc

Directory

sample9_R1_001_preprocessed.fastq.gz

1.62 GB

sample9_R2_001_preprocessed.fastq.gz

1.61 GB

sample9_R1_001_statistics.txt.gz

1.19 kB

Samtools idxstats

idxstat_report.txt

4.08 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.22 MB

STAR

sample9_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

43.49 MB

sample9_R1_001_preprocessed_stats.txt

1.82 kB

sample9_R1_001_preprocessed.bam.bai

3.69 MB

sample9_R1_001_preprocessed_SJ.out.tab

8.64 MB

sample9_R1_001_preprocessed.bam

3.64 GB

sample9_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

44.05 MB

Subsample FASTQ (paired-end)

fastqc

Directory

sample9_R1_001_preprocessed_downsampled.fastq.gz

58.12 MB

sample9_R2_001_preprocessed_downsampled.fastq.gz

57.68 MB

STAR

sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.80 MB

sample9_R1_001_preprocessed_downsampled.bam.bai

264 B

sample9_R1_001_preprocessed_downsampled.bam

3.33 MB

sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

55.35 MB

sample9_R1_001_preprocessed_downsampled_SJ.out.tab

513 B

sample9_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

STAR

sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.64 MB

sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

57.19 MB

sample9_R1_001_preprocessed_downsampled.bam

317.47 kB

sample9_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

sample9_R1_001_preprocessed_downsampled.bam.bai

848 B

sample9_R1_001_preprocessed_downsampled_SJ.out.tab

6.28 kB

FASTQ file (paired-end)

fastqc

Directory

sample9_R1_001.fastq.gz

2.26 GB

sample9_R2_001.fastq.gz

2.36 GB

stderr.txt

1.75 kB

sample9_R1_001_fastqc.zip

795.93 kB

sample9_R2_001_fastqc.zip

799.72 kB

Copy of KMS12-BM + UT

Samtools idxstats

idxstat_report.txt

4.09 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.22 MB

BBDuk (paired-end)

fastqc

Directory

sample8_R1_001_preprocessed.fastq.gz

1.78 GB

sample8_R2_001_preprocessed.fastq.gz

1.77 GB

sample8_R1_001_statistics.txt.gz

1.21 kB

Subsample FASTQ (paired-end)

sample8_R1_001_preprocessed_downsampled.fastq.gz

57.98 MB

fastqc

Directory

sample8_R2_001_preprocessed_downsampled.fastq.gz

57.62 MB

featureCounts

sample8_R1_001_preprocessed_featureCounts_rc.txt.gz

4.44 MB

results

Directory

featureCounts_rc.txt.summary

350 B

sample8_R1_001_preprocessed_rc.tab.gz

252.82 kB

sample8_R1_001_preprocessed_fpkm.tab.gz

424.49 kB

sample8_R1_001_preprocessed_cpm.tab.gz

290.14 kB

sample8_R1_001_preprocessed_expressions.txt.gz

1.17 MB

sample8_R1_001_preprocessed_tpm.tab.gz

423.62 kB

STAR

sample8_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.19 MB

sample8_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

55.83 MB

sample8_R1_001_preprocessed_downsampled.bam.bai

264 B

sample8_R1_001_preprocessed_downsampled.bam

2.42 MB

sample8_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

sample8_R1_001_preprocessed_downsampled_SJ.out.tab

364 B

STAR

sample8_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.51 MB

sample8_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

57.15 MB

sample8_R1_001_preprocessed_downsampled.bam.bai

784 B

sample8_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

sample8_R1_001_preprocessed_downsampled.bam

273.15 kB

sample8_R1_001_preprocessed_downsampled_SJ.out.tab

5.73 kB

STAR

sample8_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

40.56 MB

sample8_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

41.16 MB

sample8_R1_001_preprocessed.bam.bai

3.68 MB

sample8_R1_001_preprocessed.bam

3.78 GB

sample8_R1_001_preprocessed_SJ.out.tab

8.96 MB

sample8_R1_001_preprocessed_stats.txt

1.82 kB

FASTQ file (paired-end)

fastqc

Directory

sample8_R1_001.fastq.gz

2.47 GB

stderr.txt

1.75 kB

sample8_R1_001_fastqc.zip

793.54 kB

sample8_R2_001.fastq.gz

2.58 GB

sample8_R2_001_fastqc.zip

800.80 kB

No Sample

Samtools idxstats

idxstat_report.txt

5.96 kB

STAR

10_R1_001_preprocessed_downsampled.bam.bai

336 B

10_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.58 MB

10_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

63.33 MB

10_R1_001_preprocessed_downsampled.bam

1.38 MB

10_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

10_R1_001_preprocessed_downsampled_SJ.out.tab

102 B

Samtools idxstats

idxstat_report.txt

5.95 kB

FASTQ file (paired-end)

fastqc

Directory

12_R1_001.fastq.gz

2.24 GB

12_R2_001_fastqc.zip

812.71 kB

12_R1_001_fastqc.zip

809.98 kB

12_R2_001.fastq.gz

2.41 GB

stderr.txt

1.67 kB

BBDuk (paired-end)

fastqc

Directory

12_R2_001_preprocessed.fastq.gz

1.70 GB

12_R1_001_preprocessed.fastq.gz

1.68 GB

12_R1_001_statistics.txt.gz

1.38 kB

FASTQ file (paired-end)

fastqc

Directory

10_R2_001.fastq.gz

2.44 GB

10_R2_001_fastqc.zip

815.75 kB

10_R1_001.fastq.gz

2.27 GB

stderr.txt

1.67 kB

10_R1_001_fastqc.zip

813.74 kB

BBDuk (paired-end)

fastqc

Directory

10_R1_001_preprocessed.fastq.gz

1.71 GB

10_R1_001_statistics.txt.gz

1.32 kB

10_R2_001_preprocessed.fastq.gz

1.73 GB

STAR

10_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

30.18 MB

10_R1_001_preprocessed_stats.txt

1.82 kB

10_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

30.79 MB

10_R1_001_preprocessed.bam.bai

3.16 MB

10_R1_001_preprocessed.bam

2.88 GB

10_R1_001_preprocessed_SJ.out.tab

8.48 MB

Subsample FASTQ (paired-end)

fastqc

Directory

10_R1_001_preprocessed_downsampled.fastq.gz

64.03 MB

10_R2_001_preprocessed_downsampled.fastq.gz

64.83 MB

featureCounts

10_R1_001_preprocessed_cpm.tab.gz

367.00 kB

10_R1_001_preprocessed_tpm.tab.gz

472.89 kB

10_R1_001_preprocessed_expressions.txt.gz

930.66 kB

10_R1_001_preprocessed_rc.tab.gz

255.63 kB

featureCounts_rc.txt.summary

345 B

10_R1_001_preprocessed_featureCounts_rc.txt.gz

4.75 MB

results

Directory

STAR

10_R1_001_preprocessed_downsampled.bam.bai

592 B

10_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

64.32 MB

10_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

10_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.56 MB

10_R1_001_preprocessed_downsampled_SJ.out.tab

4.12 kB

10_R1_001_preprocessed_downsampled.bam

206.46 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.24 MB

FASTQ file (paired-end)

fastqc

Directory

11_R2_001_fastqc.zip

814.30 kB

11_R2_001.fastq.gz

2.39 GB

11_R1_001.fastq.gz

2.23 GB

stderr.txt

1.67 kB

11_R1_001_fastqc.zip

813.98 kB

BBDuk (paired-end)

fastqc

Directory

11_R1_001_statistics.txt.gz

1.31 kB

11_R1_001_preprocessed.fastq.gz

1.67 GB

11_R2_001_preprocessed.fastq.gz

1.69 GB

STAR

11_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

30.46 MB

11_R1_001_preprocessed.bam

2.76 GB

11_R1_001_preprocessed_stats.txt

1.82 kB

11_R1_001_preprocessed.bam.bai

3.17 MB

11_R1_001_preprocessed_SJ.out.tab

8.42 MB

11_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

29.91 MB

Subsample FASTQ (paired-end)

fastqc

Directory

11_R2_001_preprocessed_downsampled.fastq.gz

64.93 MB

11_R1_001_preprocessed_downsampled.fastq.gz

64.25 MB

featureCounts

11_R1_001_preprocessed_expressions.txt.gz

930.92 kB

featureCounts_rc.txt.summary

345 B

11_R1_001_preprocessed_rc.tab.gz

255.23 kB

11_R1_001_preprocessed_featureCounts_rc.txt.gz

4.75 MB

11_R1_001_preprocessed_cpm.tab.gz

365.47 kB

11_R1_001_preprocessed_tpm.tab.gz

474.50 kB

results

Directory

STAR

11_R1_001_preprocessed_downsampled.bam

1.03 MB

11_R1_001_preprocessed_downsampled_SJ.out.tab

206 B

11_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

63.72 MB

11_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

11_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.08 MB

11_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

11_R1_001_preprocessed_downsampled.bam.bai

472 B

11_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

11_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

64.44 MB

11_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.79 MB

11_R1_001_preprocessed_downsampled.bam

202.26 kB

11_R1_001_preprocessed_downsampled_SJ.out.tab

4.97 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.24 MB

STAR

12_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

33.97 MB

12_R1_001_preprocessed_stats.txt

1.82 kB

12_R1_001_preprocessed.bam

2.98 GB

12_R1_001_preprocessed_SJ.out.tab

8.82 MB

12_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

33.18 MB

12_R1_001_preprocessed.bam.bai

3.44 MB

Subsample FASTQ (paired-end)

fastqc

Directory

12_R1_001_preprocessed_downsampled.fastq.gz

64.60 MB

12_R2_001_preprocessed_downsampled.fastq.gz

65.67 MB

featureCounts

featureCounts_rc.txt.summary

345 B

12_R1_001_preprocessed_expressions.txt.gz

958.77 kB

12_R1_001_preprocessed_cpm.tab.gz

368.74 kB

12_R1_001_preprocessed_rc.tab.gz

256.79 kB

12_R1_001_preprocessed_tpm.tab.gz

495.85 kB

results

Directory

12_R1_001_preprocessed_featureCounts_rc.txt.gz

4.75 MB

Samtools idxstats

idxstat_report.txt

5.96 kB

STAR

12_R1_001_preprocessed_downsampled.bam.bai

336 B

12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.60 MB

12_R1_001_preprocessed_downsampled.bam

2.14 MB

12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

63.59 MB

12_R1_001_preprocessed_downsampled_SJ.out.tab

451 B

12_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

STAR

12_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

12_R1_001_preprocessed_downsampled.bam.bai

720 B

12_R1_001_preprocessed_downsampled_SJ.out.tab

5.07 kB

12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

65.16 MB

12_R1_001_preprocessed_downsampled.bam

282.11 kB

12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.13 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.24 MB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

featureCounts

results

Directory

sample9_R1_001_preprocessed_rc.tab.gz

252.99 kB

sample9_R1_001_preprocessed_cpm.tab.gz

290.87 kB

featureCounts_rc.txt.summary

351 B

sample9_R1_001_preprocessed_featureCounts_rc.txt.gz

4.44 MB

sample9_R1_001_preprocessed_fpkm.tab.gz

428.43 kB

sample9_R1_001_preprocessed_expressions.txt.gz

1.18 MB

sample9_R1_001_preprocessed_tpm.tab.gz

427.61 kB

featureCounts

results

Directory

sample7_R1_001_preprocessed_rc.tab.gz

252.04 kB

sample7_R1_001_preprocessed_tpm.tab.gz

422.10 kB

featureCounts_rc.txt.summary

350 B

sample7_R1_001_preprocessed_cpm.tab.gz

288.41 kB

sample7_R1_001_preprocessed_featureCounts_rc.txt.gz

4.44 MB

sample7_R1_001_preprocessed_expressions.txt.gz

1.17 MB

sample7_R1_001_preprocessed_fpkm.tab.gz

423.06 kB

FASTQ file (paired-end)

sample7_R1_001.fastq.gz

2.29 GB

fastqc

Directory

sample7_R2_001_fastqc.zip

808.92 kB

stderr.txt

1.75 kB

sample7_R1_001_fastqc.zip

801.88 kB

sample7_R2_001.fastq.gz

2.40 GB

Samtools idxstats

idxstat_report.txt

4.09 kB

BBDuk (paired-end)

fastqc

Directory

sample9_R1_001_preprocessed.fastq.gz

1.62 GB

sample9_R2_001_preprocessed.fastq.gz

1.61 GB

sample9_R1_001_statistics.txt.gz

1.19 kB

Samtools idxstats

idxstat_report.txt

4.09 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.22 MB

BBDuk (paired-end)

sample7_R1_001_statistics.txt.gz

1.18 kB

fastqc

Directory

sample7_R1_001_preprocessed.fastq.gz

1.64 GB

sample7_R2_001_preprocessed.fastq.gz

1.64 GB

Subsample FASTQ (paired-end)

fastqc

Directory

sample7_R2_001_preprocessed_downsampled.fastq.gz

56.75 MB

sample7_R1_001_preprocessed_downsampled.fastq.gz

56.96 MB

STAR

sample7_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

39.44 MB

sample7_R1_001_preprocessed.bam.bai

3.61 MB

sample7_R1_001_preprocessed.bam

3.44 GB

sample7_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

38.68 MB

sample7_R1_001_preprocessed_SJ.out.tab

8.67 MB

sample7_R1_001_preprocessed_stats.txt

1.82 kB

STAR

sample7_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.44 MB

sample7_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

55.23 MB

sample7_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

sample7_R1_001_preprocessed_downsampled.bam

1.90 MB

sample7_R1_001_preprocessed_downsampled.bam.bai

336 B

sample7_R1_001_preprocessed_downsampled_SJ.out.tab

468 B

STAR

sample7_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.45 MB

sample7_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

56.23 MB

sample7_R1_001_preprocessed_downsampled.bam.bai

1.02 kB

sample7_R1_001_preprocessed_downsampled.bam

335.08 kB

sample7_R1_001_preprocessed_downsampled_SJ.out.tab

6.30 kB

sample7_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

Samtools idxstats

idxstat_report.txt

4.08 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.22 MB

STAR

sample9_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

43.49 MB

sample9_R1_001_preprocessed_stats.txt

1.82 kB

sample9_R1_001_preprocessed.bam.bai

3.69 MB

sample9_R1_001_preprocessed_SJ.out.tab

8.64 MB

sample9_R1_001_preprocessed.bam

3.64 GB

sample9_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

44.05 MB

Subsample FASTQ (paired-end)

fastqc

Directory

sample9_R1_001_preprocessed_downsampled.fastq.gz

58.12 MB

sample9_R2_001_preprocessed_downsampled.fastq.gz

57.68 MB

STAR

sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.80 MB

sample9_R1_001_preprocessed_downsampled.bam.bai

264 B

sample9_R1_001_preprocessed_downsampled.bam

3.33 MB

sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

55.35 MB

sample9_R1_001_preprocessed_downsampled_SJ.out.tab

513 B

sample9_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

STAR

sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.64 MB

sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

57.19 MB

sample9_R1_001_preprocessed_downsampled.bam

317.47 kB

sample9_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

sample9_R1_001_preprocessed_downsampled.bam.bai

848 B

sample9_R1_001_preprocessed_downsampled_SJ.out.tab

6.28 kB

FASTQ file (paired-end)

fastqc

Directory

sample9_R1_001.fastq.gz

2.26 GB

sample9_R2_001.fastq.gz

2.36 GB

stderr.txt

1.75 kB

sample9_R1_001_fastqc.zip

795.93 kB

sample9_R2_001_fastqc.zip

799.72 kB

BBDuk (paired-end)

fastqc

Directory

sample8_R1_001_preprocessed.fastq.gz

1.78 GB

sample8_R2_001_preprocessed.fastq.gz

1.77 GB

sample8_R1_001_statistics.txt.gz

1.21 kB

Subsample FASTQ (paired-end)

sample8_R1_001_preprocessed_downsampled.fastq.gz

57.98 MB

fastqc

Directory

sample8_R2_001_preprocessed_downsampled.fastq.gz

57.62 MB

featureCounts

sample8_R1_001_preprocessed_featureCounts_rc.txt.gz

4.44 MB

results

Directory

featureCounts_rc.txt.summary

350 B

sample8_R1_001_preprocessed_rc.tab.gz

252.82 kB

sample8_R1_001_preprocessed_fpkm.tab.gz

424.49 kB

sample8_R1_001_preprocessed_cpm.tab.gz

290.14 kB

sample8_R1_001_preprocessed_expressions.txt.gz

1.17 MB

sample8_R1_001_preprocessed_tpm.tab.gz

423.62 kB

STAR

sample8_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.19 MB

sample8_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

55.83 MB

sample8_R1_001_preprocessed_downsampled.bam.bai

264 B

sample8_R1_001_preprocessed_downsampled.bam

2.42 MB

sample8_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

sample8_R1_001_preprocessed_downsampled_SJ.out.tab

364 B

STAR

sample8_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.51 MB

sample8_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz

57.15 MB

sample8_R1_001_preprocessed_downsampled.bam.bai

784 B

sample8_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

sample8_R1_001_preprocessed_downsampled.bam

273.15 kB

sample8_R1_001_preprocessed_downsampled_SJ.out.tab

5.73 kB

STAR

sample8_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

40.56 MB

sample8_R2_001_preprocessed_unmapped.out.mate2.fastq.gz

41.16 MB

sample8_R1_001_preprocessed.bam.bai

3.68 MB

sample8_R1_001_preprocessed.bam

3.78 GB

sample8_R1_001_preprocessed_SJ.out.tab

8.96 MB

sample8_R1_001_preprocessed_stats.txt

1.82 kB

FASTQ file (paired-end)

fastqc

Directory

sample8_R1_001.fastq.gz

2.47 GB

stderr.txt

1.75 kB

sample8_R1_001_fastqc.zip

793.54 kB

sample8_R2_001.fastq.gz

2.58 GB

sample8_R2_001_fastqc.zip

800.80 kB