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Folder iconMM RNAseq H929 1st analysis

Paulo Gameiro
Nov. 10, 2020

Copy of H929 untreated

STAR
sample4_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.94 MB
sample4_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
30.99 MB
sample4_R1_001_preprocessed_stats.txt
1.82 kB
sample4_R1_001_preprocessed.bam.bai
3.79 MB
sample4_R1_001_preprocessed_SJ.out.tab
8.83 MB
sample4_R1_001_preprocessed.bam
3.44 GB
Samtools idxstats
idxstat_report.txt
4.11 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
350 B
sample4_R1_001_preprocessed_rc.tab.gz
251.33 kB
sample4_R1_001_preprocessed_fpkm.tab.gz
419.62 kB
sample4_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample4_R1_001_preprocessed_expressions.txt.gz
1.16 MB
sample4_R1_001_preprocessed_cpm.tab.gz
288.66 kB
sample4_R1_001_preprocessed_tpm.tab.gz
418.74 kB
STAR
sample4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.36 MB
sample4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.99 MB
sample4_R1_001_preprocessed_downsampled.bam.bai
1.06 kB
sample4_R1_001_preprocessed_downsampled.bam
335.75 kB
sample4_R1_001_preprocessed_downsampled_SJ.out.tab
6.72 kB
sample4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
STAR
sample4_R1_001_preprocessed_downsampled.bam
1.87 MB
sample4_R1_001_preprocessed_downsampled.bam.bai
336 B
sample4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.03 MB
sample4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.40 MB
sample4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample4_R1_001_preprocessed_downsampled_SJ.out.tab
247 B
Subsample FASTQ (paired-end)
fastqc
Directory
sample4_R1_001_preprocessed_downsampled.fastq.gz
57.47 MB
sample4_R2_001_preprocessed_downsampled.fastq.gz
56.86 MB
BBDuk (paired-end)
sample4_R1_001_preprocessed.fastq.gz
1.60 GB
fastqc
Directory
sample4_R1_001_statistics.txt.gz
1.14 kB
sample4_R2_001_preprocessed.fastq.gz
1.58 GB
FASTQ file (paired-end)
sample4_R1_001.fastq.gz
2.24 GB
fastqc
Directory
sample4_R1_001_fastqc.zip
796.01 kB
sample4_R2_001.fastq.gz
2.38 GB
sample4_R2_001_fastqc.zip
808.04 kB
stderr.txt
1.75 kB

Copy of H929 + CART

STAR
sample6_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
24.79 MB
sample6_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.68 MB
sample6_R1_001_preprocessed.bam.bai
3.48 MB
sample6_R1_001_preprocessed.bam
3.62 GB
sample6_R1_001_preprocessed_SJ.out.tab
8.86 MB
sample6_R1_001_preprocessed_stats.txt
1.82 kB
STAR
sample6_R1_001_preprocessed_downsampled.bam
264.45 kB
sample6_R1_001_preprocessed_downsampled.bam.bai
784 B
sample6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.10 MB
sample6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.40 MB
sample6_R1_001_preprocessed_downsampled_SJ.out.tab
5.33 kB
FASTQ file (paired-end)
sample6_R1_001.fastq.gz
2.42 GB
sample6_R2_001.fastq.gz
2.51 GB
sample6_R2_001_fastqc.zip
798.94 kB
sample6_R1_001_fastqc.zip
791.10 kB
fastqc
Directory
stderr.txt
1.75 kB
BBDuk (paired-end)
sample6_R1_001_preprocessed.fastq.gz
1.75 GB
fastqc
Directory
sample6_R2_001_preprocessed.fastq.gz
1.74 GB
sample6_R1_001_statistics.txt.gz
1.12 kB
Subsample FASTQ (paired-end)
sample6_R2_001_preprocessed_downsampled.fastq.gz
57.57 MB
fastqc
Directory
sample6_R1_001_preprocessed_downsampled.fastq.gz
57.88 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
Samtools idxstats
idxstat_report.txt
4.09 kB
STAR
sample6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.30 MB
sample6_R1_001_preprocessed_downsampled.bam
1.50 MB
sample6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.62 MB
sample6_R1_001_preprocessed_downsampled.bam.bai
336 B
sample6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample6_R1_001_preprocessed_downsampled_SJ.out.tab
259 B
featureCounts
featureCounts_rc.txt.summary
350 B
sample6_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample6_R1_001_preprocessed_rc.tab.gz
251.17 kB
sample6_R1_001_preprocessed_fpkm.tab.gz
410.59 kB
results
Directory
sample6_R1_001_preprocessed_cpm.tab.gz
287.28 kB
sample6_R1_001_preprocessed_expressions.txt.gz
1.14 MB
sample6_R1_001_preprocessed_tpm.tab.gz
409.24 kB

Copy of H929 only

FASTQ file (paired-end)
fastqc
Directory
4_R1_001.fastq.gz
2.20 GB
4_R1_001_fastqc.zip
808.83 kB
4_R2_001_fastqc.zip
813.30 kB
4_R2_001.fastq.gz
2.34 GB
stderr.txt
1.63 kB
STAR
4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.42 MB
4_R1_001_preprocessed_downsampled_SJ.out.tab
306 B
4_R1_001_preprocessed_downsampled.bam
1.34 MB
4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
61.79 MB
4_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.72 MB
4_R1_001_preprocessed_downsampled_SJ.out.tab
4.61 kB
4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.38 MB
4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
4_R1_001_preprocessed_downsampled.bam.bai
472 B
4_R1_001_preprocessed_downsampled.bam
208.01 kB
STAR
4_R1_001_preprocessed.bam.bai
3.57 MB
4_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
29.12 MB
4_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.57 MB
4_R1_001_preprocessed_stats.txt
1.82 kB
4_R1_001_preprocessed.bam
2.73 GB
4_R1_001_preprocessed_SJ.out.tab
8.01 MB
Subsample FASTQ (paired-end)
4_R2_001_preprocessed_downsampled.fastq.gz
63.83 MB
fastqc
Directory
4_R1_001_preprocessed_downsampled.fastq.gz
63.15 MB
featureCounts
4_R1_001_preprocessed_cpm.tab.gz
363.84 kB
4_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
featureCounts_rc.txt.summary
344 B
4_R1_001_preprocessed_rc.tab.gz
255.50 kB
4_R1_001_preprocessed_expressions.txt.gz
950.59 kB
4_R1_001_preprocessed_tpm.tab.gz
493.48 kB
results
Directory
Samtools idxstats
idxstat_report.txt
5.97 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.24 MB
BBDuk (paired-end)
fastqc
Directory
4_R1_001_preprocessed.fastq.gz
1.63 GB
4_R2_001_preprocessed.fastq.gz
1.65 GB
4_R1_001_statistics.txt.gz
1.35 kB

Copy of H929 + CART

Samtools idxstats
idxstat_report.txt
5.97 kB
FASTQ file (paired-end)
fastqc
Directory
6_R1_001_fastqc.zip
817.56 kB
6_R2_001_fastqc.zip
827.10 kB
6_R2_001.fastq.gz
3.29 GB
6_R1_001.fastq.gz
2.96 GB
stderr.txt
1.63 kB
BBDuk (paired-end)
6_R1_001_preprocessed.fastq.gz
2.28 GB
fastqc
Directory
6_R1_001_statistics.txt.gz
1.58 kB
6_R2_001_preprocessed.fastq.gz
2.43 GB
STAR
6_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
53.81 MB
6_R1_001_preprocessed_stats.txt
1.82 kB
6_R1_001_preprocessed.bam.bai
3.88 MB
6_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
57.00 MB
6_R1_001_preprocessed_SJ.out.tab
8.93 MB
6_R1_001_preprocessed.bam
4.07 GB
Subsample FASTQ (paired-end)
fastqc
Directory
6_R2_001_preprocessed_downsampled.fastq.gz
72.52 MB
6_R1_001_preprocessed_downsampled.fastq.gz
68.29 MB
featureCounts
featureCounts_rc.txt.summary
344 B
6_R1_001_preprocessed_rc.tab.gz
258.12 kB
6_R1_001_preprocessed_expressions.txt.gz
974.87 kB
6_R1_001_preprocessed_cpm.tab.gz
371.88 kB
6_R1_001_preprocessed_tpm.tab.gz
506.86 kB
results
Directory
6_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
STAR
6_R1_001_preprocessed_downsampled.bam
1.94 MB
6_R1_001_preprocessed_downsampled_SJ.out.tab
763 B
6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
70.66 MB
6_R1_001_preprocessed_downsampled.bam.bai
336 B
6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
66.46 MB
STAR
6_R1_001_preprocessed_downsampled.bam
206.54 kB
6_R1_001_preprocessed_downsampled.bam.bai
648 B
6_R1_001_preprocessed_downsampled_SJ.out.tab
4.44 kB
6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
72.03 MB
6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
67.76 MB
6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.24 MB

Copy of H929 + UT

FASTQ file (paired-end)
sample5_R2_001.fastq.gz
2.61 GB
fastqc
Directory
sample5_R1_001_fastqc.zip
790.41 kB
stderr.txt
1.75 kB
sample5_R2_001_fastqc.zip
795.40 kB
sample5_R1_001.fastq.gz
2.50 GB
Subsample FASTQ (paired-end)
fastqc
Directory
sample5_R2_001_preprocessed_downsampled.fastq.gz
58.12 MB
sample5_R1_001_preprocessed_downsampled.fastq.gz
58.48 MB
STAR
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.65 MB
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.02 MB
sample5_R1_001_preprocessed_downsampled.bam.bai
336 B
sample5_R1_001_preprocessed_downsampled.bam
1.82 MB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
259 B
STAR
sample5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.00 MB
sample5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
27.13 MB
sample5_R1_001_preprocessed.bam.bai
3.64 MB
sample5_R1_001_preprocessed_SJ.out.tab
8.98 MB
sample5_R1_001_preprocessed_stats.txt
1.82 kB
sample5_R1_001_preprocessed.bam
3.80 GB
STAR
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.62 MB
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.98 MB
sample5_R1_001_preprocessed_downsampled.bam
317.79 kB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
5.43 kB
sample5_R1_001_preprocessed_downsampled.bam.bai
1.13 kB
Samtools idxstats
idxstat_report.txt
4.11 kB
BBDuk (paired-end)
sample5_R1_001_preprocessed.fastq.gz
1.82 GB
sample5_R2_001_preprocessed.fastq.gz
1.81 GB
fastqc
Directory
sample5_R1_001_statistics.txt.gz
1.13 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample5_R1_001_preprocessed_fpkm.tab.gz
418.89 kB
sample5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample5_R1_001_preprocessed_rc.tab.gz
252.58 kB
sample5_R1_001_preprocessed_cpm.tab.gz
292.11 kB
sample5_R1_001_preprocessed_expressions.txt.gz
1.16 MB
results
Directory
sample5_R1_001_preprocessed_tpm.tab.gz
418.05 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB

Copy of H929 + UT

STAR
5_R1_001_preprocessed_stats.txt
1.82 kB
5_R1_001_preprocessed_SJ.out.tab
8.09 MB
5_R1_001_preprocessed.bam.bai
3.59 MB
5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
33.05 MB
5_R1_001_preprocessed.bam
3.07 GB
5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
32.18 MB
Samtools idxstats
idxstat_report.txt
5.96 kB
STAR
5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
63.27 MB
5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
5_R1_001_preprocessed_downsampled.bam
209.22 kB
5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
64.47 MB
5_R1_001_preprocessed_downsampled_SJ.out.tab
5.18 kB
5_R1_001_preprocessed_downsampled.bam.bai
544 B
featureCounts
5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
featureCounts_rc.txt.summary
344 B
5_R1_001_preprocessed_tpm.tab.gz
490.01 kB
5_R1_001_preprocessed_expressions.txt.gz
946.54 kB
5_R1_001_preprocessed_cpm.tab.gz
362.06 kB
5_R1_001_preprocessed_rc.tab.gz
255.38 kB
results
Directory
FASTQ file (paired-end)
fastqc
Directory
5_R1_001.fastq.gz
2.27 GB
5_R1_001_fastqc.zip
814.54 kB
5_R2_001_fastqc.zip
815.69 kB
stderr.txt
1.63 kB
5_R2_001.fastq.gz
2.43 GB
BBDuk (paired-end)
5_R1_001_statistics.txt.gz
1.40 kB
fastqc
Directory
5_R2_001_preprocessed.fastq.gz
1.71 GB
5_R1_001_preprocessed.fastq.gz
1.68 GB
Subsample FASTQ (paired-end)
fastqc
Directory
5_R2_001_preprocessed_downsampled.fastq.gz
64.98 MB
5_R1_001_preprocessed_downsampled.fastq.gz
63.76 MB
STAR
5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.32 MB
5_R1_001_preprocessed_downsampled_SJ.out.tab
395 B
5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
5_R1_001_preprocessed_downsampled.bam
2.92 MB
5_R1_001_preprocessed_downsampled.bam.bai
336 B
5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
61.16 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.24 MB

No Sample

FASTQ file (paired-end)
sample5_R2_001.fastq.gz
2.61 GB
fastqc
Directory
sample5_R1_001_fastqc.zip
790.41 kB
stderr.txt
1.75 kB
sample5_R2_001_fastqc.zip
795.40 kB
sample5_R1_001.fastq.gz
2.50 GB
Subsample FASTQ (paired-end)
fastqc
Directory
sample5_R2_001_preprocessed_downsampled.fastq.gz
58.12 MB
sample5_R1_001_preprocessed_downsampled.fastq.gz
58.48 MB
STAR
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.65 MB
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.02 MB
sample5_R1_001_preprocessed_downsampled.bam.bai
336 B
sample5_R1_001_preprocessed_downsampled.bam
1.82 MB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
259 B
STAR
sample5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.00 MB
sample5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
27.13 MB
sample5_R1_001_preprocessed.bam.bai
3.64 MB
sample5_R1_001_preprocessed_SJ.out.tab
8.98 MB
sample5_R1_001_preprocessed_stats.txt
1.82 kB
sample5_R1_001_preprocessed.bam
3.80 GB
STAR
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.62 MB
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.98 MB
sample5_R1_001_preprocessed_downsampled.bam
317.79 kB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
5.43 kB
sample5_R1_001_preprocessed_downsampled.bam.bai
1.13 kB
STAR
sample4_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.94 MB
sample4_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
30.99 MB
sample4_R1_001_preprocessed_stats.txt
1.82 kB
sample4_R1_001_preprocessed.bam.bai
3.79 MB
sample4_R1_001_preprocessed_SJ.out.tab
8.83 MB
sample4_R1_001_preprocessed.bam
3.44 GB
STAR
sample6_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
24.79 MB
sample6_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.68 MB
sample6_R1_001_preprocessed.bam.bai
3.48 MB
sample6_R1_001_preprocessed.bam
3.62 GB
sample6_R1_001_preprocessed_SJ.out.tab
8.86 MB
sample6_R1_001_preprocessed_stats.txt
1.82 kB
STAR
sample6_R1_001_preprocessed_downsampled.bam
264.45 kB
sample6_R1_001_preprocessed_downsampled.bam.bai
784 B
sample6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.10 MB
sample6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.40 MB
sample6_R1_001_preprocessed_downsampled_SJ.out.tab
5.33 kB
FASTQ file (paired-end)
sample6_R1_001.fastq.gz
2.42 GB
sample6_R2_001.fastq.gz
2.51 GB
sample6_R2_001_fastqc.zip
798.94 kB
sample6_R1_001_fastqc.zip
791.10 kB
fastqc
Directory
stderr.txt
1.75 kB
BBDuk (paired-end)
sample6_R1_001_preprocessed.fastq.gz
1.75 GB
fastqc
Directory
sample6_R2_001_preprocessed.fastq.gz
1.74 GB
sample6_R1_001_statistics.txt.gz
1.12 kB
Subsample FASTQ (paired-end)
sample6_R2_001_preprocessed_downsampled.fastq.gz
57.57 MB
fastqc
Directory
sample6_R1_001_preprocessed_downsampled.fastq.gz
57.88 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
Samtools idxstats
idxstat_report.txt
4.11 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
350 B
sample4_R1_001_preprocessed_rc.tab.gz
251.33 kB
sample4_R1_001_preprocessed_fpkm.tab.gz
419.62 kB
sample4_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample4_R1_001_preprocessed_expressions.txt.gz
1.16 MB
sample4_R1_001_preprocessed_cpm.tab.gz
288.66 kB
sample4_R1_001_preprocessed_tpm.tab.gz
418.74 kB
STAR
sample4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.36 MB
sample4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.99 MB
sample4_R1_001_preprocessed_downsampled.bam.bai
1.06 kB
sample4_R1_001_preprocessed_downsampled.bam
335.75 kB
sample4_R1_001_preprocessed_downsampled_SJ.out.tab
6.72 kB
sample4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
STAR
sample4_R1_001_preprocessed_downsampled.bam
1.87 MB
sample4_R1_001_preprocessed_downsampled.bam.bai
336 B
sample4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.03 MB
sample4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.40 MB
sample4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample4_R1_001_preprocessed_downsampled_SJ.out.tab
247 B
Subsample FASTQ (paired-end)
fastqc
Directory
sample4_R1_001_preprocessed_downsampled.fastq.gz
57.47 MB
sample4_R2_001_preprocessed_downsampled.fastq.gz
56.86 MB
BBDuk (paired-end)
sample4_R1_001_preprocessed.fastq.gz
1.60 GB
fastqc
Directory
sample4_R1_001_statistics.txt.gz
1.14 kB
sample4_R2_001_preprocessed.fastq.gz
1.58 GB
FASTQ file (paired-end)
sample4_R1_001.fastq.gz
2.24 GB
fastqc
Directory
sample4_R1_001_fastqc.zip
796.01 kB
sample4_R2_001.fastq.gz
2.38 GB
sample4_R2_001_fastqc.zip
808.04 kB
stderr.txt
1.75 kB
Samtools idxstats
idxstat_report.txt
5.97 kB
FASTQ file (paired-end)
fastqc
Directory
6_R1_001_fastqc.zip
817.56 kB
6_R2_001_fastqc.zip
827.10 kB
6_R2_001.fastq.gz
3.29 GB
6_R1_001.fastq.gz
2.96 GB
stderr.txt
1.63 kB
FASTQ file (paired-end)
fastqc
Directory
4_R1_001.fastq.gz
2.20 GB
4_R1_001_fastqc.zip
808.83 kB
4_R2_001_fastqc.zip
813.30 kB
4_R2_001.fastq.gz
2.34 GB
stderr.txt
1.63 kB
STAR
4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.42 MB
4_R1_001_preprocessed_downsampled_SJ.out.tab
306 B
4_R1_001_preprocessed_downsampled.bam
1.34 MB
4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
61.79 MB
4_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.72 MB
4_R1_001_preprocessed_downsampled_SJ.out.tab
4.61 kB
4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.38 MB
4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
4_R1_001_preprocessed_downsampled.bam.bai
472 B
4_R1_001_preprocessed_downsampled.bam
208.01 kB
STAR
4_R1_001_preprocessed.bam.bai
3.57 MB
4_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
29.12 MB
4_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.57 MB
4_R1_001_preprocessed_stats.txt
1.82 kB
4_R1_001_preprocessed.bam
2.73 GB
4_R1_001_preprocessed_SJ.out.tab
8.01 MB
Subsample FASTQ (paired-end)
4_R2_001_preprocessed_downsampled.fastq.gz
63.83 MB
fastqc
Directory
4_R1_001_preprocessed_downsampled.fastq.gz
63.15 MB
featureCounts
4_R1_001_preprocessed_cpm.tab.gz
363.84 kB
4_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
featureCounts_rc.txt.summary
344 B
4_R1_001_preprocessed_rc.tab.gz
255.50 kB
4_R1_001_preprocessed_expressions.txt.gz
950.59 kB
4_R1_001_preprocessed_tpm.tab.gz
493.48 kB
results
Directory
Samtools idxstats
idxstat_report.txt
5.97 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.24 MB
BBDuk (paired-end)
fastqc
Directory
4_R1_001_preprocessed.fastq.gz
1.63 GB
4_R2_001_preprocessed.fastq.gz
1.65 GB
4_R1_001_statistics.txt.gz
1.35 kB
BBDuk (paired-end)
6_R1_001_preprocessed.fastq.gz
2.28 GB
fastqc
Directory
6_R1_001_statistics.txt.gz
1.58 kB
6_R2_001_preprocessed.fastq.gz
2.43 GB
STAR
6_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
53.81 MB
6_R1_001_preprocessed_stats.txt
1.82 kB
6_R1_001_preprocessed.bam.bai
3.88 MB
6_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
57.00 MB
6_R1_001_preprocessed_SJ.out.tab
8.93 MB
6_R1_001_preprocessed.bam
4.07 GB
Subsample FASTQ (paired-end)
fastqc
Directory
6_R2_001_preprocessed_downsampled.fastq.gz
72.52 MB
6_R1_001_preprocessed_downsampled.fastq.gz
68.29 MB
featureCounts
featureCounts_rc.txt.summary
344 B
6_R1_001_preprocessed_rc.tab.gz
258.12 kB
6_R1_001_preprocessed_expressions.txt.gz
974.87 kB
6_R1_001_preprocessed_cpm.tab.gz
371.88 kB
6_R1_001_preprocessed_tpm.tab.gz
506.86 kB
results
Directory
6_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
STAR
6_R1_001_preprocessed_downsampled.bam
1.94 MB
6_R1_001_preprocessed_downsampled_SJ.out.tab
763 B
6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
70.66 MB
6_R1_001_preprocessed_downsampled.bam.bai
336 B
6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
66.46 MB
STAR
6_R1_001_preprocessed_downsampled.bam
206.54 kB
6_R1_001_preprocessed_downsampled.bam.bai
648 B
6_R1_001_preprocessed_downsampled_SJ.out.tab
4.44 kB
6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
72.03 MB
6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
67.76 MB
6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.11 kB
BBDuk (paired-end)
sample5_R1_001_preprocessed.fastq.gz
1.82 GB
sample5_R2_001_preprocessed.fastq.gz
1.81 GB
fastqc
Directory
sample5_R1_001_statistics.txt.gz
1.13 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample5_R1_001_preprocessed_fpkm.tab.gz
418.89 kB
sample5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample5_R1_001_preprocessed_rc.tab.gz
252.58 kB
sample5_R1_001_preprocessed_cpm.tab.gz
292.11 kB
sample5_R1_001_preprocessed_expressions.txt.gz
1.16 MB
results
Directory
sample5_R1_001_preprocessed_tpm.tab.gz
418.05 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
Samtools idxstats
idxstat_report.txt
5.96 kB
STAR
5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
63.27 MB
5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
5_R1_001_preprocessed_downsampled.bam
209.22 kB
5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
64.47 MB
5_R1_001_preprocessed_downsampled_SJ.out.tab
5.18 kB
5_R1_001_preprocessed_downsampled.bam.bai
544 B
featureCounts
5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
featureCounts_rc.txt.summary
344 B
5_R1_001_preprocessed_tpm.tab.gz
490.01 kB
5_R1_001_preprocessed_expressions.txt.gz
946.54 kB
5_R1_001_preprocessed_cpm.tab.gz
362.06 kB
5_R1_001_preprocessed_rc.tab.gz
255.38 kB
results
Directory
FASTQ file (paired-end)
fastqc
Directory
5_R1_001.fastq.gz
2.27 GB
5_R1_001_fastqc.zip
814.54 kB
5_R2_001_fastqc.zip
815.69 kB
stderr.txt
1.63 kB
5_R2_001.fastq.gz
2.43 GB
BBDuk (paired-end)
5_R1_001_statistics.txt.gz
1.40 kB
fastqc
Directory
5_R2_001_preprocessed.fastq.gz
1.71 GB
5_R1_001_preprocessed.fastq.gz
1.68 GB
STAR
5_R1_001_preprocessed_SJ.out.tab
8.09 MB
5_R1_001_preprocessed.bam.bai
3.59 MB
5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
33.05 MB
5_R1_001_preprocessed.bam
3.07 GB
5_R1_001_preprocessed_stats.txt
1.82 kB
5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
32.18 MB
Subsample FASTQ (paired-end)
fastqc
Directory
5_R2_001_preprocessed_downsampled.fastq.gz
64.98 MB
5_R1_001_preprocessed_downsampled.fastq.gz
63.76 MB
STAR
5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.32 MB
5_R1_001_preprocessed_downsampled_SJ.out.tab
395 B
5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
5_R1_001_preprocessed_downsampled.bam
2.92 MB
5_R1_001_preprocessed_downsampled.bam.bai
336 B
5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
61.16 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.09 kB
STAR
sample6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.30 MB
sample6_R1_001_preprocessed_downsampled.bam
1.50 MB
sample6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.62 MB
sample6_R1_001_preprocessed_downsampled.bam.bai
336 B
sample6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample6_R1_001_preprocessed_downsampled_SJ.out.tab
259 B
featureCounts
featureCounts_rc.txt.summary
350 B
sample6_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample6_R1_001_preprocessed_rc.tab.gz
251.17 kB
sample6_R1_001_preprocessed_fpkm.tab.gz
410.59 kB
results
Directory
sample6_R1_001_preprocessed_cpm.tab.gz
287.28 kB
sample6_R1_001_preprocessed_expressions.txt.gz
1.14 MB
sample6_R1_001_preprocessed_tpm.tab.gz
409.24 kB