Back to Archive

Folder iconPRMT5i_RNA_seq

Llywelyn Griffith
Nov. 2, 2020
RNA-seq samples from HCT116 cells treated with either GSK-595 or LLY-283 PRMT5 inhibitor for 72 hours

No Sample

MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
fastqc
Directory
LLY_72_1_r1_statistics.txt.gz
883 B
LLY_72_1_r2_preprocessed.fastq.gz
1.84 GB
LLY_72_1_r1_preprocessed.fastq.gz
1.84 GB
Samtools idxstats
idxstat_report.txt
5.92 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
Samtools idxstats
idxstat_report.txt
5.91 kB
BBDuk (paired-end)
fastqc
Directory
LLY_72_3_r2_preprocessed.fastq.gz
2.01 GB
LLY_72_3_r1_statistics.txt.gz
923 B
LLY_72_3_r1_preprocessed.fastq.gz
2.01 GB
BBDuk (paired-end)
fastqc
Directory
LLY_72_2_r1_preprocessed.fastq.gz
2.24 GB
LLY_72_2_r1_statistics.txt.gz
889 B
LLY_72_2_r2_preprocessed.fastq.gz
2.24 GB
Subsample FASTQ (paired-end)
fastqc
Directory
LLY_72_1_r2_preprocessed_downsampled.fastq.gz
54.16 MB
LLY_72_1_r1_preprocessed_downsampled.fastq.gz
54.17 MB
STAR
LLY_72_1_r1_preprocessed.bam
3.20 GB
LLY_72_1_r1_preprocessed_unmapped.out.mate1.fastq.gz
13.58 MB
LLY_72_1_r1_preprocessed.bam.bai
3.18 MB
LLY_72_1_r1_preprocessed_stats.txt
1.82 kB
LLY_72_1_r2_preprocessed_unmapped.out.mate2.fastq.gz
13.03 MB
LLY_72_1_r1_preprocessed_SJ.out.tab
7.87 MB
BBDuk (paired-end)
fastqc
Directory
GSK_72_1_r1_preprocessed.fastq.gz
2.01 GB
GSK_72_1_r1_statistics.txt.gz
865 B
GSK_72_1_r2_preprocessed.fastq.gz
2.01 GB
BBDuk (paired-end)
fastqc
Directory
GSK_72_2_r1_preprocessed.fastq.gz
2.33 GB
GSK_72_2_r2_preprocessed.fastq.gz
2.33 GB
GSK_72_2_r1_statistics.txt.gz
937 B
BBDuk (paired-end)
DMSO_72_3_r2_preprocessed.fastq.gz
2.30 GB
fastqc
Directory
DMSO_72_3_r1_statistics.txt.gz
909 B
DMSO_72_3_r1_preprocessed.fastq.gz
2.31 GB
BBDuk (paired-end)
fastqc
Directory
DMSO_72_1_r1_preprocessed.fastq.gz
1.87 GB
DMSO_72_1_r2_preprocessed.fastq.gz
1.87 GB
DMSO_72_1_r1_statistics.txt.gz
837 B
BBDuk (paired-end)
fastqc
Directory
GSK_72_3_r1_preprocessed.fastq.gz
2.13 GB
GSK_72_3_r2_preprocessed.fastq.gz
2.13 GB
GSK_72_3_r1_statistics.txt.gz
976 B
Subsample FASTQ (paired-end)
fastqc
Directory
LLY_72_3_r2_preprocessed_downsampled.fastq.gz
56.20 MB
LLY_72_3_r1_preprocessed_downsampled.fastq.gz
56.38 MB
BBDuk (paired-end)
fastqc
Directory
DMSO_72_2_r2_preprocessed.fastq.gz
2.25 GB
DMSO_72_2_r1_statistics.txt.gz
872 B
DMSO_72_2_r1_preprocessed.fastq.gz
2.24 GB
STAR
LLY_72_3_r1_preprocessed.bam.bai
3.30 MB
LLY_72_3_r2_preprocessed_unmapped.out.mate2.fastq.gz
13.52 MB
LLY_72_3_r1_preprocessed.bam
3.59 GB
LLY_72_3_r1_preprocessed_SJ.out.tab
8.78 MB
LLY_72_3_r1_preprocessed_unmapped.out.mate1.fastq.gz
13.78 MB
LLY_72_3_r1_preprocessed_stats.txt
1.82 kB
Subsample FASTQ (paired-end)
fastqc
Directory
LLY_72_2_r2_preprocessed_downsampled.fastq.gz
56.64 MB
LLY_72_2_r1_preprocessed_downsampled.fastq.gz
56.69 MB
STAR
LLY_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_1_r1_preprocessed_downsampled_SJ.out.tab
7.45 kB
LLY_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.87 MB
LLY_72_1_r1_preprocessed_downsampled.bam.bai
744 B
LLY_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.85 MB
LLY_72_1_r1_preprocessed_downsampled.bam
290.36 kB
STAR
LLY_72_1_r1_preprocessed_downsampled.bam.bai
264 B
LLY_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.99 MB
LLY_72_1_r1_preprocessed_downsampled_SJ.out.tab
51 B
LLY_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
51.97 MB
LLY_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_1_r1_preprocessed_downsampled.bam
2.43 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
featureCounts
featureCounts_rc.txt.summary
348 B
LLY_72_1_r1_preprocessed_expressions.txt.gz
921.96 kB
LLY_72_1_r1_preprocessed_tpm.tab.gz
463.80 kB
results
Directory
LLY_72_1_r1_preprocessed_rc.tab.gz
255.76 kB
LLY_72_1_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
LLY_72_1_r1_preprocessed_cpm.tab.gz
369.04 kB
Subsample FASTQ (paired-end)
GSK_72_1_r1_preprocessed_downsampled.fastq.gz
54.54 MB
fastqc
Directory
GSK_72_1_r2_preprocessed_downsampled.fastq.gz
54.51 MB
STAR
LLY_72_2_r2_preprocessed_unmapped.out.mate2.fastq.gz
35.85 MB
LLY_72_2_r1_preprocessed_unmapped.out.mate1.fastq.gz
37.82 MB
LLY_72_2_r1_preprocessed_SJ.out.tab
8.66 MB
LLY_72_2_r1_preprocessed.bam.bai
3.38 MB
LLY_72_2_r1_preprocessed.bam
3.61 GB
LLY_72_2_r1_preprocessed_stats.txt
1.82 kB
Subsample FASTQ (paired-end)
fastqc
Directory
GSK_72_2_r1_preprocessed_downsampled.fastq.gz
56.35 MB
GSK_72_2_r2_preprocessed_downsampled.fastq.gz
56.29 MB
STAR
GSK_72_1_r2_preprocessed_unmapped.out.mate2.fastq.gz
12.38 MB
GSK_72_1_r1_preprocessed_SJ.out.tab
8.16 MB
GSK_72_1_r1_preprocessed_stats.txt
1.82 kB
GSK_72_1_r1_preprocessed.bam
3.36 GB
GSK_72_1_r1_preprocessed_unmapped.out.mate1.fastq.gz
12.84 MB
GSK_72_1_r1_preprocessed.bam.bai
3.26 MB
Subsample FASTQ (paired-end)
fastqc
Directory
DMSO_72_1_r1_preprocessed_downsampled.fastq.gz
54.29 MB
DMSO_72_1_r2_preprocessed_downsampled.fastq.gz
54.29 MB
STAR
DMSO_72_1_r1_preprocessed_SJ.out.tab
8.02 MB
DMSO_72_1_r2_preprocessed_unmapped.out.mate2.fastq.gz
10.31 MB
DMSO_72_1_r1_preprocessed.bam.bai
3.14 MB
DMSO_72_1_r1_preprocessed_stats.txt
1.83 kB
DMSO_72_1_r1_preprocessed_unmapped.out.mate1.fastq.gz
10.61 MB
DMSO_72_1_r1_preprocessed.bam
3.66 GB
STAR
GSK_72_2_r2_preprocessed_unmapped.out.mate2.fastq.gz
39.85 MB
GSK_72_2_r1_preprocessed_stats.txt
1.82 kB
GSK_72_2_r1_preprocessed_SJ.out.tab
8.65 MB
GSK_72_2_r1_preprocessed.bam.bai
3.44 MB
GSK_72_2_r1_preprocessed_unmapped.out.mate1.fastq.gz
42.03 MB
GSK_72_2_r1_preprocessed.bam
3.89 GB
Subsample FASTQ (paired-end)
fastqc
Directory
GSK_72_3_r1_preprocessed_downsampled.fastq.gz
55.58 MB
GSK_72_3_r2_preprocessed_downsampled.fastq.gz
55.45 MB
Subsample FASTQ (paired-end)
DMSO_72_3_r1_preprocessed_downsampled.fastq.gz
55.66 MB
fastqc
Directory
DMSO_72_3_r2_preprocessed_downsampled.fastq.gz
55.50 MB
STAR
LLY_72_3_r1_preprocessed_downsampled_SJ.out.tab
208 B
LLY_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.58 MB
LLY_72_3_r1_preprocessed_downsampled.bam
2.95 MB
LLY_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.76 MB
LLY_72_3_r1_preprocessed_downsampled.bam.bai
336 B
STAR
LLY_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.05 MB
LLY_72_3_r1_preprocessed_downsampled_SJ.out.tab
7.17 kB
LLY_72_3_r1_preprocessed_downsampled.bam.bai
744 B
LLY_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.87 MB
LLY_72_3_r1_preprocessed_downsampled.bam
293.74 kB
STAR
GSK_72_3_r2_preprocessed_unmapped.out.mate2.fastq.gz
14.28 MB
GSK_72_3_r1_preprocessed_stats.txt
1.82 kB
GSK_72_3_r1_preprocessed_SJ.out.tab
8.78 MB
GSK_72_3_r1_preprocessed.bam
3.71 GB
GSK_72_3_r1_preprocessed_unmapped.out.mate1.fastq.gz
14.62 MB
GSK_72_3_r1_preprocessed.bam.bai
3.31 MB
Subsample FASTQ (paired-end)
fastqc
Directory
DMSO_72_2_r1_preprocessed_downsampled.fastq.gz
57.78 MB
DMSO_72_2_r2_preprocessed_downsampled.fastq.gz
57.72 MB
featureCounts
LLY_72_3_r1_preprocessed_tpm.tab.gz
469.21 kB
LLY_72_3_r1_preprocessed_cpm.tab.gz
371.56 kB
featureCounts_rc.txt.summary
348 B
LLY_72_3_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
LLY_72_3_r1_preprocessed_rc.tab.gz
256.65 kB
LLY_72_3_r1_preprocessed_expressions.txt.gz
931.81 kB
results
Directory
STAR
LLY_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.89 MB
LLY_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.84 MB
LLY_72_2_r1_preprocessed_downsampled.bam.bai
264 B
LLY_72_2_r1_preprocessed_downsampled_SJ.out.tab
53 B
LLY_72_2_r1_preprocessed_downsampled.bam
1.93 MB
FASTQ file (paired-end)
fastqc
Directory
GSK_72_2_r1_fastqc.zip
513.68 kB
GSK_72_2_r1.fastq.gz
3.08 GB
GSK_72_2_r2_fastqc.zip
517.83 kB
stderr.txt
1.75 kB
GSK_72_2_r2.fastq.gz
3.26 GB
STAR
DMSO_72_3_r1_preprocessed.bam
4.02 GB
DMSO_72_3_r1_preprocessed_stats.txt
1.82 kB
DMSO_72_3_r1_preprocessed_unmapped.out.mate1.fastq.gz
15.70 MB
DMSO_72_3_r1_preprocessed.bam.bai
3.33 MB
DMSO_72_3_r1_preprocessed_SJ.out.tab
9.03 MB
DMSO_72_3_r2_preprocessed_unmapped.out.mate2.fastq.gz
15.20 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
LLY_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.33 MB
LLY_72_2_r1_preprocessed_downsampled_SJ.out.tab
6.27 kB
LLY_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.38 MB
LLY_72_2_r1_preprocessed_downsampled.bam
264.69 kB
LLY_72_2_r1_preprocessed_downsampled.bam.bai
800 B
STAR
GSK_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_1_r1_preprocessed_downsampled.bam
1.97 MB
GSK_72_1_r1_preprocessed_downsampled_SJ.out.tab
209 B
GSK_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
52.71 MB
GSK_72_1_r1_preprocessed_downsampled.bam.bai
336 B
GSK_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.74 MB
STAR
GSK_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.23 MB
GSK_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.25 MB
GSK_72_1_r1_preprocessed_downsampled.bam
290.33 kB
GSK_72_1_r1_preprocessed_downsampled.bam.bai
728 B
GSK_72_1_r1_preprocessed_downsampled_SJ.out.tab
7.01 kB
FASTQ file (paired-end)
fastqc
Directory
LLY_72_1_r2.fastq.gz
2.61 GB
LLY_72_1_r1_fastqc.zip
515.05 kB
stderr.txt
1.75 kB
LLY_72_1_r2_fastqc.zip
520.74 kB
LLY_72_1_r1.fastq.gz
2.47 GB
FASTQ file (paired-end)
GSK_72_3_r2.fastq.gz
2.94 GB
fastqc
Directory
GSK_72_3_r2_fastqc.zip
520.81 kB
GSK_72_3_r1.fastq.gz
2.84 GB
GSK_72_3_r1_fastqc.zip
515.99 kB
stderr.txt
1.75 kB
FASTQ file (paired-end)
DMSO_72_1_r2.fastq.gz
2.63 GB
fastqc
Directory
DMSO_72_1_r1_fastqc.zip
519.68 kB
stderr.txt
1.79 kB
DMSO_72_1_r2_fastqc.zip
522.08 kB
DMSO_72_1_r1.fastq.gz
2.52 GB
FASTQ file (paired-end)
DMSO_72_2_r1.fastq.gz
2.94 GB
DMSO_72_2_r2_fastqc.zip
520.30 kB
DMSO_72_2_r1_fastqc.zip
511.46 kB
fastqc
Directory
DMSO_72_2_r2.fastq.gz
3.14 GB
stderr.txt
1.79 kB
FASTQ file (paired-end)
fastqc
Directory
GSK_72_1_r2.fastq.gz
2.77 GB
stderr.txt
1.75 kB
GSK_72_1_r1_fastqc.zip
517.32 kB
GSK_72_1_r2_fastqc.zip
513.43 kB
GSK_72_1_r1.fastq.gz
2.68 GB
FASTQ file (paired-end)
DMSO_72_3_r2_fastqc.zip
520.52 kB
fastqc
Directory
DMSO_72_3_r1.fastq.gz
3.06 GB
stderr.txt
1.79 kB
DMSO_72_3_r1_fastqc.zip
517.94 kB
DMSO_72_3_r2.fastq.gz
3.22 GB
FASTQ file (paired-end)
fastqc
Directory
LLY_72_3_r1.fastq.gz
2.66 GB
LLY_72_3_r2_fastqc.zip
517.12 kB
LLY_72_3_r2.fastq.gz
2.78 GB
LLY_72_3_r1_fastqc.zip
512.90 kB
stderr.txt
1.75 kB
STAR
GSK_72_2_r1_preprocessed_downsampled.bam.bai
264 B
GSK_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.99 MB
GSK_72_2_r1_preprocessed_downsampled.bam
2.54 MB
GSK_72_2_r1_preprocessed_downsampled_SJ.out.tab
206 B
GSK_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.05 MB
GSK_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
FASTQ file (paired-end)
LLY_72_2_r1_fastqc.zip
516.62 kB
fastqc
Directory
LLY_72_2_r1.fastq.gz
2.94 GB
stderr.txt
1.75 kB
LLY_72_2_r2.fastq.gz
3.15 GB
LLY_72_2_r2_fastqc.zip
522.01 kB
STAR
GSK_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.03 MB
GSK_72_2_r1_preprocessed_downsampled_SJ.out.tab
6.42 kB
GSK_72_2_r1_preprocessed_downsampled.bam.bai
712 B
GSK_72_2_r1_preprocessed_downsampled.bam
251.71 kB
GSK_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.98 MB
STAR
DMSO_72_2_r1_preprocessed.bam.bai
3.25 MB
DMSO_72_2_r1_preprocessed_unmapped.out.mate1.fastq.gz
49.86 MB
DMSO_72_2_r1_preprocessed_stats.txt
1.82 kB
DMSO_72_2_r1_preprocessed_SJ.out.tab
8.95 MB
DMSO_72_2_r2_preprocessed_unmapped.out.mate2.fastq.gz
47.12 MB
DMSO_72_2_r1_preprocessed.bam
3.68 GB
featureCounts
LLY_72_2_r1_preprocessed_rc.tab.gz
257.00 kB
featureCounts_rc.txt.summary
348 B
LLY_72_2_r1_preprocessed_expressions.txt.gz
935.90 kB
LLY_72_2_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
LLY_72_2_r1_preprocessed_cpm.tab.gz
373.08 kB
results
Directory
LLY_72_2_r1_preprocessed_tpm.tab.gz
472.01 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
DMSO_72_1_r1_preprocessed_downsampled.bam.bai
336 B
DMSO_72_1_r1_preprocessed_downsampled_SJ.out.tab
204 B
DMSO_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
50.37 MB
DMSO_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.40 MB
DMSO_72_1_r1_preprocessed_downsampled.bam
4.63 MB
STAR
DMSO_72_1_r1_preprocessed_downsampled_SJ.out.tab
5.73 kB
DMSO_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.99 MB
DMSO_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.99 MB
DMSO_72_1_r1_preprocessed_downsampled.bam.bai
696 B
DMSO_72_1_r1_preprocessed_downsampled.bam
235.52 kB
featureCounts
GSK_72_1_r1_preprocessed_tpm.tab.gz
465.40 kB
GSK_72_1_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
GSK_72_1_r1_preprocessed_cpm.tab.gz
369.89 kB
GSK_72_1_r1_preprocessed_expressions.txt.gz
926.20 kB
GSK_72_1_r1_preprocessed_rc.tab.gz
256.19 kB
results
Directory
featureCounts_rc.txt.summary
348 B
Samtools idxstats
idxstat_report.txt
5.91 kB
STAR
GSK_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_3_r1_preprocessed_downsampled.bam
2.60 MB
GSK_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.25 MB
GSK_72_3_r1_preprocessed_downsampled_SJ.out.tab
51 B
GSK_72_3_r1_preprocessed_downsampled.bam.bai
336 B
GSK_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.11 MB
STAR
GSK_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.27 MB
GSK_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.14 MB
GSK_72_3_r1_preprocessed_downsampled_SJ.out.tab
6.97 kB
GSK_72_3_r1_preprocessed_downsampled.bam.bai
728 B
GSK_72_3_r1_preprocessed_downsampled.bam
276.48 kB
STAR
DMSO_72_3_r1_preprocessed_downsampled_SJ.out.tab
6.57 kB
DMSO_72_3_r1_preprocessed_downsampled.bam
238.65 kB
DMSO_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.35 MB
DMSO_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.20 MB
DMSO_72_3_r1_preprocessed_downsampled.bam.bai
696 B
STAR
DMSO_72_3_r1_preprocessed_downsampled.bam.bai
336 B
DMSO_72_3_r1_preprocessed_downsampled_SJ.out.tab
209 B
DMSO_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.07 MB
DMSO_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
52.90 MB
DMSO_72_3_r1_preprocessed_downsampled.bam
2.90 MB
featureCounts
GSK_72_2_r1_preprocessed_expressions.txt.gz
937.41 kB
GSK_72_2_r1_preprocessed_cpm.tab.gz
374.33 kB
GSK_72_2_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
GSK_72_2_r1_preprocessed_tpm.tab.gz
471.73 kB
featureCounts_rc.txt.summary
348 B
GSK_72_2_r1_preprocessed_rc.tab.gz
257.54 kB
results
Directory
Samtools idxstats
idxstat_report.txt
5.92 kB
featureCounts
DMSO_72_1_r1_preprocessed_cpm.tab.gz
368.05 kB
DMSO_72_1_r1_preprocessed_expressions.txt.gz
917.76 kB
featureCounts_rc.txt.summary
349 B
DMSO_72_1_r1_preprocessed_tpm.tab.gz
461.04 kB
DMSO_72_1_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
DMSO_72_1_r1_preprocessed_rc.tab.gz
255.37 kB
results
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
GSK_72_3_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
GSK_72_3_r1_preprocessed_cpm.tab.gz
372.53 kB
featureCounts_rc.txt.summary
348 B
GSK_72_3_r1_preprocessed_tpm.tab.gz
468.49 kB
results
Directory
GSK_72_3_r1_preprocessed_rc.tab.gz
256.75 kB
GSK_72_3_r1_preprocessed_expressions.txt.gz
931.86 kB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
STAR
DMSO_72_2_r1_preprocessed_downsampled.bam.bai
264 B
DMSO_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.33 MB
DMSO_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_2_r1_preprocessed_downsampled_SJ.out.tab
207 B
DMSO_72_2_r1_preprocessed_downsampled.bam
2.62 MB
DMSO_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.39 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
DMSO_72_2_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
DMSO_72_2_r1_preprocessed_expressions.txt.gz
937.55 kB
DMSO_72_2_r1_preprocessed_tpm.tab.gz
471.71 kB
DMSO_72_2_r1_preprocessed_cpm.tab.gz
373.77 kB
featureCounts_rc.txt.summary
349 B
DMSO_72_2_r1_preprocessed_rc.tab.gz
257.18 kB
results
Directory
STAR
DMSO_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.48 MB
DMSO_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_2_r1_preprocessed_downsampled.bam.bai
592 B
DMSO_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.43 MB
DMSO_72_2_r1_preprocessed_downsampled.bam
201.25 kB
DMSO_72_2_r1_preprocessed_downsampled_SJ.out.tab
5.10 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
DMSO_72_3_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
DMSO_72_3_r1_preprocessed_cpm.tab.gz
373.76 kB
DMSO_72_3_r1_preprocessed_rc.tab.gz
257.30 kB
DMSO_72_3_r1_preprocessed_tpm.tab.gz
467.74 kB
featureCounts_rc.txt.summary
349 B
DMSO_72_3_r1_preprocessed_expressions.txt.gz
932.82 kB
results
Directory

DMSO_72_2_r1

STAR
DMSO_72_2_r1_preprocessed.bam
3.68 GB
DMSO_72_2_r1_preprocessed.bam.bai
3.25 MB
DMSO_72_2_r1_preprocessed_unmapped.out.mate1.fastq.gz
49.86 MB
DMSO_72_2_r1_preprocessed_stats.txt
1.82 kB
DMSO_72_2_r1_preprocessed_SJ.out.tab
8.95 MB
DMSO_72_2_r2_preprocessed_unmapped.out.mate2.fastq.gz
47.12 MB
Samtools idxstats
idxstat_report.txt
5.91 kB
BBDuk (paired-end)
fastqc
Directory
DMSO_72_2_r2_preprocessed.fastq.gz
2.25 GB
DMSO_72_2_r1_statistics.txt.gz
872 B
DMSO_72_2_r1_preprocessed.fastq.gz
2.24 GB
Subsample FASTQ (paired-end)
fastqc
Directory
DMSO_72_2_r1_preprocessed_downsampled.fastq.gz
57.78 MB
DMSO_72_2_r2_preprocessed_downsampled.fastq.gz
57.72 MB
FASTQ file (paired-end)
DMSO_72_2_r1.fastq.gz
2.94 GB
DMSO_72_2_r2_fastqc.zip
520.30 kB
DMSO_72_2_r1_fastqc.zip
511.46 kB
fastqc
Directory
DMSO_72_2_r2.fastq.gz
3.14 GB
stderr.txt
1.79 kB
STAR
DMSO_72_2_r1_preprocessed_downsampled.bam.bai
264 B
DMSO_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.33 MB
DMSO_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_2_r1_preprocessed_downsampled_SJ.out.tab
207 B
DMSO_72_2_r1_preprocessed_downsampled.bam
2.62 MB
DMSO_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.39 MB
featureCounts
DMSO_72_2_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
DMSO_72_2_r1_preprocessed_expressions.txt.gz
937.55 kB
DMSO_72_2_r1_preprocessed_tpm.tab.gz
471.71 kB
DMSO_72_2_r1_preprocessed_cpm.tab.gz
373.77 kB
featureCounts_rc.txt.summary
349 B
DMSO_72_2_r1_preprocessed_rc.tab.gz
257.18 kB
results
Directory
STAR
DMSO_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.48 MB
DMSO_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_2_r1_preprocessed_downsampled.bam.bai
592 B
DMSO_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.43 MB
DMSO_72_2_r1_preprocessed_downsampled.bam
201.25 kB
DMSO_72_2_r1_preprocessed_downsampled_SJ.out.tab
5.10 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB

DMSO_72_3_r1

MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
DMSO_72_3_r2_preprocessed.fastq.gz
2.30 GB
fastqc
Directory
DMSO_72_3_r1_statistics.txt.gz
909 B
DMSO_72_3_r1_preprocessed.fastq.gz
2.31 GB
Subsample FASTQ (paired-end)
DMSO_72_3_r1_preprocessed_downsampled.fastq.gz
55.66 MB
fastqc
Directory
DMSO_72_3_r2_preprocessed_downsampled.fastq.gz
55.50 MB
STAR
DMSO_72_3_r1_preprocessed.bam
4.02 GB
DMSO_72_3_r1_preprocessed_stats.txt
1.82 kB
DMSO_72_3_r1_preprocessed_unmapped.out.mate1.fastq.gz
15.70 MB
DMSO_72_3_r1_preprocessed.bam.bai
3.33 MB
DMSO_72_3_r1_preprocessed_SJ.out.tab
9.03 MB
DMSO_72_3_r2_preprocessed_unmapped.out.mate2.fastq.gz
15.20 MB
FASTQ file (paired-end)
DMSO_72_3_r2_fastqc.zip
520.52 kB
fastqc
Directory
DMSO_72_3_r1.fastq.gz
3.06 GB
stderr.txt
1.79 kB
DMSO_72_3_r1_fastqc.zip
517.94 kB
DMSO_72_3_r2.fastq.gz
3.22 GB
STAR
DMSO_72_3_r1_preprocessed_downsampled_SJ.out.tab
6.57 kB
DMSO_72_3_r1_preprocessed_downsampled.bam
238.65 kB
DMSO_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.35 MB
DMSO_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.20 MB
DMSO_72_3_r1_preprocessed_downsampled.bam.bai
696 B
STAR
DMSO_72_3_r1_preprocessed_downsampled.bam.bai
336 B
DMSO_72_3_r1_preprocessed_downsampled_SJ.out.tab
209 B
DMSO_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.07 MB
DMSO_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
52.90 MB
DMSO_72_3_r1_preprocessed_downsampled.bam
2.90 MB
featureCounts
DMSO_72_3_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
DMSO_72_3_r1_preprocessed_cpm.tab.gz
373.76 kB
DMSO_72_3_r1_preprocessed_rc.tab.gz
257.30 kB
DMSO_72_3_r1_preprocessed_tpm.tab.gz
467.74 kB
featureCounts_rc.txt.summary
349 B
DMSO_72_3_r1_preprocessed_expressions.txt.gz
932.82 kB
results
Directory

DMSO_72_1_r1

BBDuk (paired-end)
fastqc
Directory
DMSO_72_1_r1_preprocessed.fastq.gz
1.87 GB
DMSO_72_1_r2_preprocessed.fastq.gz
1.87 GB
DMSO_72_1_r1_statistics.txt.gz
837 B
Subsample FASTQ (paired-end)
fastqc
Directory
DMSO_72_1_r1_preprocessed_downsampled.fastq.gz
54.29 MB
DMSO_72_1_r2_preprocessed_downsampled.fastq.gz
54.29 MB
STAR
DMSO_72_1_r1_preprocessed_SJ.out.tab
8.02 MB
DMSO_72_1_r2_preprocessed_unmapped.out.mate2.fastq.gz
10.31 MB
DMSO_72_1_r1_preprocessed.bam.bai
3.14 MB
DMSO_72_1_r1_preprocessed_stats.txt
1.83 kB
DMSO_72_1_r1_preprocessed_unmapped.out.mate1.fastq.gz
10.61 MB
DMSO_72_1_r1_preprocessed.bam
3.66 GB
FASTQ file (paired-end)
DMSO_72_1_r2.fastq.gz
2.63 GB
fastqc
Directory
DMSO_72_1_r1_fastqc.zip
519.68 kB
stderr.txt
1.79 kB
DMSO_72_1_r2_fastqc.zip
522.08 kB
DMSO_72_1_r1.fastq.gz
2.52 GB
STAR
DMSO_72_1_r1_preprocessed_downsampled.bam.bai
336 B
DMSO_72_1_r1_preprocessed_downsampled_SJ.out.tab
204 B
DMSO_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
50.37 MB
DMSO_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.40 MB
DMSO_72_1_r1_preprocessed_downsampled.bam
4.63 MB
STAR
DMSO_72_1_r1_preprocessed_downsampled_SJ.out.tab
5.73 kB
DMSO_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.99 MB
DMSO_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.99 MB
DMSO_72_1_r1_preprocessed_downsampled.bam.bai
696 B
DMSO_72_1_r1_preprocessed_downsampled.bam
235.52 kB
Samtools idxstats
idxstat_report.txt
5.91 kB
featureCounts
DMSO_72_1_r1_preprocessed_cpm.tab.gz
368.05 kB
DMSO_72_1_r1_preprocessed_expressions.txt.gz
917.76 kB
featureCounts_rc.txt.summary
349 B
DMSO_72_1_r1_preprocessed_tpm.tab.gz
461.04 kB
DMSO_72_1_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
DMSO_72_1_r1_preprocessed_rc.tab.gz
255.37 kB
results
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB

GSK_72_2_r1

Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
fastqc
Directory
GSK_72_2_r1_preprocessed.fastq.gz
2.33 GB
GSK_72_2_r2_preprocessed.fastq.gz
2.33 GB
GSK_72_2_r1_statistics.txt.gz
937 B
Subsample FASTQ (paired-end)
fastqc
Directory
GSK_72_2_r1_preprocessed_downsampled.fastq.gz
56.35 MB
GSK_72_2_r2_preprocessed_downsampled.fastq.gz
56.29 MB
STAR
GSK_72_2_r2_preprocessed_unmapped.out.mate2.fastq.gz
39.85 MB
GSK_72_2_r1_preprocessed_stats.txt
1.82 kB
GSK_72_2_r1_preprocessed_SJ.out.tab
8.65 MB
GSK_72_2_r1_preprocessed.bam.bai
3.44 MB
GSK_72_2_r1_preprocessed_unmapped.out.mate1.fastq.gz
42.03 MB
GSK_72_2_r1_preprocessed.bam
3.89 GB
FASTQ file (paired-end)
fastqc
Directory
GSK_72_2_r1_fastqc.zip
513.68 kB
GSK_72_2_r1.fastq.gz
3.08 GB
GSK_72_2_r2_fastqc.zip
517.83 kB
stderr.txt
1.75 kB
GSK_72_2_r2.fastq.gz
3.26 GB
STAR
GSK_72_2_r1_preprocessed_downsampled.bam.bai
264 B
GSK_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.99 MB
GSK_72_2_r1_preprocessed_downsampled.bam
2.54 MB
GSK_72_2_r1_preprocessed_downsampled_SJ.out.tab
206 B
GSK_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.05 MB
GSK_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
STAR
GSK_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.03 MB
GSK_72_2_r1_preprocessed_downsampled_SJ.out.tab
6.42 kB
GSK_72_2_r1_preprocessed_downsampled.bam.bai
712 B
GSK_72_2_r1_preprocessed_downsampled.bam
251.71 kB
GSK_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.98 MB
featureCounts
GSK_72_2_r1_preprocessed_expressions.txt.gz
937.41 kB
GSK_72_2_r1_preprocessed_cpm.tab.gz
374.33 kB
GSK_72_2_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
GSK_72_2_r1_preprocessed_tpm.tab.gz
471.73 kB
featureCounts_rc.txt.summary
348 B
GSK_72_2_r1_preprocessed_rc.tab.gz
257.54 kB
results
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB

GSK_72_3_r1

MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (paired-end)
fastqc
Directory
GSK_72_3_r1_preprocessed.fastq.gz
2.13 GB
GSK_72_3_r2_preprocessed.fastq.gz
2.13 GB
GSK_72_3_r1_statistics.txt.gz
976 B
Subsample FASTQ (paired-end)
fastqc
Directory
GSK_72_3_r1_preprocessed_downsampled.fastq.gz
55.58 MB
GSK_72_3_r2_preprocessed_downsampled.fastq.gz
55.45 MB
STAR
GSK_72_3_r2_preprocessed_unmapped.out.mate2.fastq.gz
14.28 MB
GSK_72_3_r1_preprocessed_stats.txt
1.82 kB
GSK_72_3_r1_preprocessed_SJ.out.tab
8.78 MB
GSK_72_3_r1_preprocessed.bam
3.71 GB
GSK_72_3_r1_preprocessed_unmapped.out.mate1.fastq.gz
14.62 MB
GSK_72_3_r1_preprocessed.bam.bai
3.31 MB
FASTQ file (paired-end)
GSK_72_3_r2.fastq.gz
2.94 GB
fastqc
Directory
GSK_72_3_r2_fastqc.zip
520.81 kB
GSK_72_3_r1.fastq.gz
2.84 GB
GSK_72_3_r1_fastqc.zip
515.99 kB
stderr.txt
1.75 kB
STAR
GSK_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_3_r1_preprocessed_downsampled.bam
2.60 MB
GSK_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.25 MB
GSK_72_3_r1_preprocessed_downsampled_SJ.out.tab
51 B
GSK_72_3_r1_preprocessed_downsampled.bam.bai
336 B
GSK_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.11 MB
STAR
GSK_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.27 MB
GSK_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.14 MB
GSK_72_3_r1_preprocessed_downsampled_SJ.out.tab
6.97 kB
GSK_72_3_r1_preprocessed_downsampled.bam.bai
728 B
GSK_72_3_r1_preprocessed_downsampled.bam
276.48 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
featureCounts
GSK_72_3_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
GSK_72_3_r1_preprocessed_cpm.tab.gz
372.53 kB
featureCounts_rc.txt.summary
348 B
GSK_72_3_r1_preprocessed_tpm.tab.gz
468.49 kB
results
Directory
GSK_72_3_r1_preprocessed_rc.tab.gz
256.75 kB
GSK_72_3_r1_preprocessed_expressions.txt.gz
931.86 kB

LLY_72_2_r1

Subsample FASTQ (paired-end)
fastqc
Directory
LLY_72_2_r2_preprocessed_downsampled.fastq.gz
56.64 MB
LLY_72_2_r1_preprocessed_downsampled.fastq.gz
56.69 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
fastqc
Directory
LLY_72_2_r1_preprocessed.fastq.gz
2.24 GB
LLY_72_2_r1_statistics.txt.gz
889 B
LLY_72_2_r2_preprocessed.fastq.gz
2.24 GB
STAR
LLY_72_2_r2_preprocessed_unmapped.out.mate2.fastq.gz
35.85 MB
LLY_72_2_r1_preprocessed_unmapped.out.mate1.fastq.gz
37.82 MB
LLY_72_2_r1_preprocessed_SJ.out.tab
8.66 MB
LLY_72_2_r1_preprocessed.bam.bai
3.38 MB
LLY_72_2_r1_preprocessed.bam
3.61 GB
LLY_72_2_r1_preprocessed_stats.txt
1.82 kB
STAR
LLY_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.89 MB
LLY_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.84 MB
LLY_72_2_r1_preprocessed_downsampled.bam.bai
264 B
LLY_72_2_r1_preprocessed_downsampled_SJ.out.tab
53 B
LLY_72_2_r1_preprocessed_downsampled.bam
1.93 MB
STAR
LLY_72_2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.33 MB
LLY_72_2_r1_preprocessed_downsampled_SJ.out.tab
6.27 kB
LLY_72_2_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.38 MB
LLY_72_2_r1_preprocessed_downsampled.bam
264.69 kB
LLY_72_2_r1_preprocessed_downsampled.bam.bai
800 B
FASTQ file (paired-end)
LLY_72_2_r1_fastqc.zip
516.62 kB
fastqc
Directory
LLY_72_2_r1.fastq.gz
2.94 GB
stderr.txt
1.75 kB
LLY_72_2_r2.fastq.gz
3.15 GB
LLY_72_2_r2_fastqc.zip
522.01 kB
featureCounts
LLY_72_2_r1_preprocessed_rc.tab.gz
257.00 kB
featureCounts_rc.txt.summary
348 B
LLY_72_2_r1_preprocessed_expressions.txt.gz
935.90 kB
LLY_72_2_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
LLY_72_2_r1_preprocessed_cpm.tab.gz
373.08 kB
results
Directory
LLY_72_2_r1_preprocessed_tpm.tab.gz
472.01 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB

GSK_72_1_r1

Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
fastqc
Directory
GSK_72_1_r1_preprocessed.fastq.gz
2.01 GB
GSK_72_1_r1_statistics.txt.gz
865 B
GSK_72_1_r2_preprocessed.fastq.gz
2.01 GB
Subsample FASTQ (paired-end)
GSK_72_1_r1_preprocessed_downsampled.fastq.gz
54.54 MB
fastqc
Directory
GSK_72_1_r2_preprocessed_downsampled.fastq.gz
54.51 MB
STAR
GSK_72_1_r2_preprocessed_unmapped.out.mate2.fastq.gz
12.38 MB
GSK_72_1_r1_preprocessed_SJ.out.tab
8.16 MB
GSK_72_1_r1_preprocessed_stats.txt
1.82 kB
GSK_72_1_r1_preprocessed.bam
3.36 GB
GSK_72_1_r1_preprocessed_unmapped.out.mate1.fastq.gz
12.84 MB
GSK_72_1_r1_preprocessed.bam.bai
3.26 MB
STAR
GSK_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_1_r1_preprocessed_downsampled.bam
1.97 MB
GSK_72_1_r1_preprocessed_downsampled_SJ.out.tab
209 B
GSK_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
52.71 MB
GSK_72_1_r1_preprocessed_downsampled.bam.bai
336 B
GSK_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.74 MB
STAR
GSK_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.23 MB
GSK_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.25 MB
GSK_72_1_r1_preprocessed_downsampled.bam
290.33 kB
GSK_72_1_r1_preprocessed_downsampled.bam.bai
728 B
GSK_72_1_r1_preprocessed_downsampled_SJ.out.tab
7.01 kB
FASTQ file (paired-end)
fastqc
Directory
GSK_72_1_r2.fastq.gz
2.77 GB
stderr.txt
1.75 kB
GSK_72_1_r1_fastqc.zip
517.32 kB
GSK_72_1_r2_fastqc.zip
513.43 kB
GSK_72_1_r1.fastq.gz
2.68 GB
featureCounts
GSK_72_1_r1_preprocessed_tpm.tab.gz
465.40 kB
GSK_72_1_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
GSK_72_1_r1_preprocessed_cpm.tab.gz
369.89 kB
GSK_72_1_r1_preprocessed_expressions.txt.gz
926.20 kB
GSK_72_1_r1_preprocessed_rc.tab.gz
256.19 kB
results
Directory
featureCounts_rc.txt.summary
348 B
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory

LLY_72_1_r1

BBDuk (paired-end)
fastqc
Directory
LLY_72_1_r1_statistics.txt.gz
883 B
LLY_72_1_r2_preprocessed.fastq.gz
1.84 GB
LLY_72_1_r1_preprocessed.fastq.gz
1.84 GB
Subsample FASTQ (paired-end)
fastqc
Directory
LLY_72_1_r2_preprocessed_downsampled.fastq.gz
54.16 MB
LLY_72_1_r1_preprocessed_downsampled.fastq.gz
54.17 MB
STAR
LLY_72_1_r1_preprocessed.bam
3.20 GB
LLY_72_1_r1_preprocessed_unmapped.out.mate1.fastq.gz
13.58 MB
LLY_72_1_r1_preprocessed.bam.bai
3.18 MB
LLY_72_1_r1_preprocessed_stats.txt
1.82 kB
LLY_72_1_r2_preprocessed_unmapped.out.mate2.fastq.gz
13.03 MB
LLY_72_1_r1_preprocessed_SJ.out.tab
7.87 MB
STAR
LLY_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_1_r1_preprocessed_downsampled_SJ.out.tab
7.45 kB
LLY_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.87 MB
LLY_72_1_r1_preprocessed_downsampled.bam.bai
744 B
LLY_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.85 MB
LLY_72_1_r1_preprocessed_downsampled.bam
290.36 kB
STAR
LLY_72_1_r1_preprocessed_downsampled.bam.bai
264 B
LLY_72_1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.99 MB
LLY_72_1_r1_preprocessed_downsampled_SJ.out.tab
51 B
LLY_72_1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
51.97 MB
LLY_72_1_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_1_r1_preprocessed_downsampled.bam
2.43 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
featureCounts
featureCounts_rc.txt.summary
348 B
LLY_72_1_r1_preprocessed_expressions.txt.gz
921.96 kB
LLY_72_1_r1_preprocessed_tpm.tab.gz
463.80 kB
results
Directory
LLY_72_1_r1_preprocessed_rc.tab.gz
255.76 kB
LLY_72_1_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
LLY_72_1_r1_preprocessed_cpm.tab.gz
369.04 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
FASTQ file (paired-end)
fastqc
Directory
LLY_72_1_r2.fastq.gz
2.61 GB
LLY_72_1_r1_fastqc.zip
515.05 kB
stderr.txt
1.75 kB
LLY_72_1_r2_fastqc.zip
520.74 kB
LLY_72_1_r1.fastq.gz
2.47 GB

LLY_72_3_r1

MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
fastqc
Directory
LLY_72_3_r2_preprocessed.fastq.gz
2.01 GB
LLY_72_3_r1_statistics.txt.gz
923 B
LLY_72_3_r1_preprocessed.fastq.gz
2.01 GB
Subsample FASTQ (paired-end)
fastqc
Directory
LLY_72_3_r2_preprocessed_downsampled.fastq.gz
56.20 MB
LLY_72_3_r1_preprocessed_downsampled.fastq.gz
56.38 MB
STAR
LLY_72_3_r1_preprocessed.bam.bai
3.30 MB
LLY_72_3_r2_preprocessed_unmapped.out.mate2.fastq.gz
13.52 MB
LLY_72_3_r1_preprocessed.bam
3.59 GB
LLY_72_3_r1_preprocessed_SJ.out.tab
8.78 MB
LLY_72_3_r1_preprocessed_unmapped.out.mate1.fastq.gz
13.78 MB
LLY_72_3_r1_preprocessed_stats.txt
1.82 kB
STAR
LLY_72_3_r1_preprocessed_downsampled_SJ.out.tab
208 B
LLY_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.58 MB
LLY_72_3_r1_preprocessed_downsampled.bam
2.95 MB
LLY_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.76 MB
LLY_72_3_r1_preprocessed_downsampled.bam.bai
336 B
STAR
LLY_72_3_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY_72_3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.05 MB
LLY_72_3_r1_preprocessed_downsampled_SJ.out.tab
7.17 kB
LLY_72_3_r1_preprocessed_downsampled.bam.bai
744 B
LLY_72_3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.87 MB
LLY_72_3_r1_preprocessed_downsampled.bam
293.74 kB
featureCounts
LLY_72_3_r1_preprocessed_tpm.tab.gz
469.21 kB
LLY_72_3_r1_preprocessed_cpm.tab.gz
371.56 kB
featureCounts_rc.txt.summary
348 B
LLY_72_3_r1_preprocessed_featureCounts_rc.txt.gz
4.75 MB
LLY_72_3_r1_preprocessed_rc.tab.gz
256.65 kB
LLY_72_3_r1_preprocessed_expressions.txt.gz
931.81 kB
results
Directory
FASTQ file (paired-end)
fastqc
Directory
LLY_72_3_r1.fastq.gz
2.66 GB
LLY_72_3_r2_fastqc.zip
517.12 kB
LLY_72_3_r2.fastq.gz
2.78 GB
LLY_72_3_r1_fastqc.zip
512.90 kB
stderr.txt
1.75 kB