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Folder iconSTAU1 in hek cells

Cristina Militti
Oct. 29, 2020

No Sample

K-mers
ncRNA region.png
307.09 kB
positional_distribution_utr3.tsv
320.59 kB
positional_distribution_ncRNA.tsv
232.64 kB
kmer_frequency_intron.tsv
5.84 kB
positional_distribution_intron.tsv
491.04 kB
other_exon region.png
231.67 kB
intron region.png
276.12 kB
kmer_frequency_ncRNA.tsv
5.65 kB
kmer_frequency_utr3.tsv
5.73 kB
kmer_frequency_genome.tsv
5.86 kB
genome region.png
239.30 kB
positional_distribution_other_exon.tsv
138.36 kB
utr3 region.png
319.41 kB
positional_distribution_genome.tsv
541.16 kB
kmer_frequency_other_exon.tsv
3.72 kB
FASTQ file (single-end)
fastqc
Directory
stau1-skmel10-ab73478-rep-2-20190412-ju.fastq.gz
350.66 MB
stderr.txt
1.36 kB
stau1-skmel10-ab73478-rep-2-20190412-ju_fastqc.zip
493.14 kB
FASTQ file (single-end)
stau1-skmel10-ab73478-total-rep2-20190906-ju.fastq.gz
212.08 MB
fastqc
Directory
stau1-skmel10-ab73478-total-rep2-20190906-ju_fastqc.zip
476.99 kB
stderr.txt
1.46 kB
iCount RNA-maps
results.tar.gz
475.21 kB
Paraclu
peaks.bed.gz
5.72 kB
FASTQ file (single-end)
fastqc
Directory
stau1-skmel10-ab73478-rep-1-20190412-ju.fastq.gz
257.95 MB
stderr.txt
1.36 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_fastqc.zip
485.03 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
708 B
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_fastqc.zip
477.04 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed.fastq.gz
253.82 MB
STAR
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed.bam.bai
4.41 MB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
82.72 MB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed.bam
1.27 GB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_SJ.out.tab
600.92 kB
iCount xlsites
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_reads_single.bed.gz
736.39 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single.bedgraph
2.55 MB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_skipped.bam
3.33 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_singleAndMulti.bed.gz
2.77 MB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single.bed.gz
638.10 kB
iCount summary
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single_summary_gene.tsv
975.14 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single_summary_type.tsv
432 B
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single_summary_subtype.tsv
1000 B
K-mers
kmer_frequency_ncRNA.tsv
5.80 kB
kmer_frequency_intron.tsv
5.71 kB
positional_distribution_intron.tsv
278.68 kB
kmer_frequency_utr3.tsv
3.51 kB
positional_distribution_genome.tsv
491.72 kB
positional_distribution_ncRNA.tsv
325.27 kB
ncRNA region.png
274.96 kB
other_exon region.png
210.01 kB
intron region.png
307.10 kB
positional_distribution_utr3.tsv
143.28 kB
kmer_frequency_genome.tsv
5.91 kB
positional_distribution_other_exon.tsv
124.75 kB
utr3 region.png
157.19 kB
genome region.png
220.08 kB
kmer_frequency_other_exon.tsv
3.26 kB
K-mers
intron region.png
273.53 kB
kmer_frequency_genome.tsv
5.89 kB
other_exon region.png
196.05 kB
positional_distribution_intron.tsv
335.82 kB
kmer_frequency_intron.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.85 kB
ncRNA region.png
274.99 kB
positional_distribution_ncRNA.tsv
359.65 kB
utr3 region.png
228.52 kB
kmer_frequency_utr3.tsv
4.71 kB
positional_distribution_other_exon.tsv
154.23 kB
positional_distribution_genome.tsv
518.55 kB
kmer_frequency_other_exon.tsv
4.33 kB
positional_distribution_utr3.tsv
172.15 kB
genome region.png
217.79 kB
iCount RNA-maps
results.tar.gz
491.90 kB
Paraclu
peaks.bed.gz
7.74 kB
Cutadapt (single-end)
report.txt
708 B
fastqc
Directory
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed.fastq.gz
347.03 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_fastqc.zip
478.32 kB
STAR
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
114.44 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed.bam.bai
4.91 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed.bam
1.73 GB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_SJ.out.tab
807.89 kB
iCount xlsites
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single.bed.gz
828.92 kB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_skipped.bam
4.36 kB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single.bedgraph
3.37 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_singleAndMulti.bed.gz
3.36 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_reads_single.bed.gz
961.64 kB
iCount summary
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single_summary_subtype.tsv
1005 B
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single_summary_gene.tsv
1.04 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single_summary_type.tsv
432 B
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed.fastq.gz
286.48 MB
STAR
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed.bam.bai
5.07 MB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed.bam
1.88 GB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_unmapped.out.mate1.fastq.gz
81.59 MB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_SJ.out.tab
518.48 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_stats.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.46 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_fastqc.zip
465.16 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju.fastq.gz
271.56 MB
iCount xlsites
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_reads_single.bed.gz
360.55 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_skipped.bam
4.03 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single.bed.gz
317.72 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_singleAndMulti.bed.gz
1.69 MB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single.bedgraph
1.22 MB
Paraclu
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single_peaks.bed.gz
4.69 kB
iCount RNA-maps
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single.tar.gz
429.11 kB
K-mers
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single.tar.gz
2.59 MB
iCount summary
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single_summary_subtype.tsv
987 B
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single_summary_type.tsv
423 B
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single_summary_gene.tsv
738.47 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed.fastq.gz
223.45 MB
STAR
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_SJ.out.tab
434.67 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_stats.txt
1.81 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed.bam.bai
4.51 MB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed.bam
1.41 GB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_unmapped.out.mate1.fastq.gz
64.17 MB
iCount xlsites
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_skipped.bam
3.51 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_singleAndMulti.bed.gz
1.64 MB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_reads_single.bed.gz
326.72 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single.bedgraph
1.10 MB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single.bed.gz
288.50 kB
K-mers
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single.tar.gz
2.23 MB
iCount summary
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single_summary_type.tsv
426 B
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single_summary_gene.tsv
696.37 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single_summary_subtype.tsv
994 B
Paraclu
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single_peaks.bed.gz
4.26 kB
iCount RNA-maps
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single.tar.gz
422.52 kB
FASTQ file (single-end)
fastqc
Directory
stau1-hek293-ab73478-rep-2-20190412-ju.fastq.gz
432.55 MB
stau1-hek293-ab73478-rep-2-20190412-ju_fastqc.zip
510.94 kB
stderr.txt
1.34 kB
FASTQ file (single-end)
fastqc
Directory
stau1-hek293-ab73478-total-rep2-20190906-ju.fastq.gz
418.45 MB
stderr.txt
1.44 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_fastqc.zip
468.85 kB
Paraclu
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single_peaks.bed.gz
6.49 kB
Paraclu
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single_peaks.bed.gz
6.16 kB
FASTQ file (single-end)
fastqc
Directory
stau1-hek293-ab73478-total-rep1-20190906-ju.fastq.gz
390.66 MB
stau1-hek293-ab73478-total-rep1-20190906-ju_fastqc.zip
464.88 kB
stderr.txt
1.44 kB
Paraclu
peaks.bed.gz
18.88 kB
iCount RNA-maps
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single.tar.gz
506.26 kB
K-mers
positional_distribution_intron.tsv
484.51 kB
ncRNA region.png
276.95 kB
kmer_frequency_utr3.tsv
5.70 kB
other_exon region.png
173.37 kB
positional_distribution_genome.tsv
541.19 kB
kmer_frequency_intron.tsv
5.87 kB
intron region.png
252.52 kB
utr3 region.png
280.76 kB
positional_distribution_ncRNA.tsv
197.50 kB
kmer_frequency_ncRNA.tsv
5.47 kB
kmer_frequency_other_exon.tsv
3.37 kB
kmer_frequency_genome.tsv
5.90 kB
positional_distribution_other_exon.tsv
131.66 kB
positional_distribution_utr3.tsv
316.66 kB
genome region.png
152.91 kB
iCount summary
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single_summary_type.tsv
435 B
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single_summary_subtype.tsv
1014 B
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single_summary_gene.tsv
1.27 MB
iCount xlsites
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_reads_single.bed.gz
2.01 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_singleAndMulti.bed.gz
6.21 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single.bedgraph
7.41 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single.bed.gz
1.71 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_skipped.bam
7.04 kB
STAR
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
133.67 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed.bam
1.36 GB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed.bam.bai
4.39 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_SJ.out.tab
1.37 MB
Paraclu
peaks.bed.gz
16.23 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
707 B
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed.fastq.gz
377.74 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_fastqc.zip
502.51 kB
iCount RNA-maps
results.tar.gz
493.09 kB
FASTQ file (single-end)
fastqc
Directory
stau1-hek293-ab73478-rep-1-20190412-ju.fastq.gz
387.28 MB
stderr.txt
1.34 kB
stau1-hek293-ab73478-rep-1-20190412-ju_fastqc.zip
517.58 kB
iCount RNA-maps
results.tar.gz
505.29 kB
iCount xlsites
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_singleAndMulti.bed.gz
6.81 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_skipped.bam
7.54 kB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single.bed.gz
1.90 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_reads_single.bed.gz
2.23 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single.bedgraph
8.28 MB
STAR
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed.bam.bai
4.45 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed.bam
1.53 GB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
148.36 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_SJ.out.tab
1.58 MB
Cutadapt (single-end)
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed.fastq.gz
422.00 MB
fastqc
Directory
report.txt
707 B
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_fastqc.zip
495.22 kB
iCount summary
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single_summary_subtype.tsv
1014 B
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single_summary_gene.tsv
1.32 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single_summary_type.tsv
436 B
K-mers
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single.tar.gz
2.61 MB
iCount summary
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single_summary_subtype.tsv
1001 B
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single_summary_type.tsv
429 B
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single_summary_gene.tsv
1.05 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
679 B
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed.fastq.gz
411.88 MB
iCount xlsites
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single.bed.gz
797.59 kB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_skipped.bam
3.34 kB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_reads_single.bed.gz
926.29 kB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_singleAndMulti.bed.gz
2.76 MB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single.bedgraph
3.23 MB
STAR
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed.bam.bai
5.82 MB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed.bam
2.45 GB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_SJ.out.tab
987.78 kB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_unmapped.out.mate1.fastq.gz
119.91 MB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_stats.txt
1.81 kB
iCount RNA-maps
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single.tar.gz
506.89 kB
K-mers
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single.tar.gz
2.60 MB
iCount summary
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single_summary_type.tsv
427 B
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single_summary_subtype.tsv
1000 B
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single_summary_gene.tsv
1.04 MB
iCount xlsites
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_singleAndMulti.bed.gz
2.78 MB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_skipped.bam
5.32 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single.bed.gz
811.57 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_reads_single.bed.gz
944.47 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single.bedgraph
3.30 MB
STAR
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed.bam.bai
6.11 MB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_unmapped.out.mate1.fastq.gz
125.67 MB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_stats.txt
1.81 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed.bam
2.65 GB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_SJ.out.tab
1018.72 kB
Cutadapt (single-end)
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed.fastq.gz
442.35 MB
report.txt
679 B
fastqc
Directory
FASTQ file (single-end)
fastqc
Directory
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_fastqc.zip
476.57 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju.fastq.gz
516.91 MB
stderr.txt
1.79 kB
Paraclu
peaks.bed.gz
28.98 kB
iCount xlsites
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_skipped.bam
7.81 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_reads_single.bed.gz
4.18 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single.bed.gz
3.69 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single.bedgraph
16.62 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_singleAndMulti.bed.gz
8.58 MB
Paraclu
peaks.bed.gz
18.57 kB
iCount summary
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single_summary_type.tsv
442 B
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single_summary_gene.tsv
1.58 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single_summary_subtype.tsv
1020 B
FASTQ file (single-end)
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju.fastq.gz
768.03 MB
fastqc
Directory
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_fastqc.zip
478.50 kB
stderr.txt
1.79 kB
Cutadapt (single-end)
report.txt
730 B
fastqc
Directory
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed.fastq.gz
764.93 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_fastqc.zip
467.05 kB
STAR
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
227.82 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed.bam
4.34 GB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed.bam.bai
8.16 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_stats.txt
1.82 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_SJ.out.tab
3.24 MB
K-mers
intron region.png
323.72 kB
kmer_frequency_genome.tsv
5.98 kB
other_exon region.png
222.02 kB
positional_distribution_intron.tsv
454.90 kB
kmer_frequency_intron.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.88 kB
positional_distribution_utr3.tsv
520.42 kB
ncRNA region.png
319.93 kB
kmer_frequency_utr3.tsv
5.79 kB
positional_distribution_ncRNA.tsv
382.90 kB
utr3 region.png
282.84 kB
kmer_frequency_other_exon.tsv
5.88 kB
genome region.png
164.34 kB
positional_distribution_genome.tsv
570.68 kB
positional_distribution_other_exon.tsv
412.37 kB
iCount RNA-maps
results.tar.gz
975.60 kB
iCount RNA-maps
results.tar.gz
845.08 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
730 B
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed.fastq.gz
512.02 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_fastqc.zip
459.01 kB
STAR
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed.bam
2.88 GB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed.bam.bai
6.50 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
158.79 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_SJ.out.tab
2.23 MB
iCount xlsites
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_skipped.bam
7.22 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_reads_single.bed.gz
2.95 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_singleAndMulti.bed.gz
6.61 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single.bedgraph
11.57 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single.bed.gz
2.60 MB
iCount summary
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single_summary_type.tsv
438 B
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single_summary_subtype.tsv
1016 B
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single_summary_gene.tsv
1.47 MB
K-mers
kmer_frequency_intron.tsv
5.91 kB
kmer_frequency_ncRNA.tsv
5.81 kB
positional_distribution_ncRNA.tsv
299.42 kB
other_exon region.png
273.56 kB
intron region.png
299.94 kB
positional_distribution_utr3.tsv
453.81 kB
kmer_frequency_utr3.tsv
5.86 kB
positional_distribution_other_exon.tsv
323.72 kB
positional_distribution_intron.tsv
389.59 kB
utr3 region.png
307.70 kB
kmer_frequency_other_exon.tsv
5.74 kB
kmer_frequency_genome.tsv
5.89 kB
genome region.png
205.54 kB
ncRNA region.png
250.50 kB
positional_distribution_genome.tsv
554.62 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm.fastq.gz
901.10 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_fastqc.zip
460.89 kB
K-mers
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single.tar.gz
2.62 MB
FASTQ file (single-end)
fastqc
Directory
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm.fastq.gz
753.36 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_fastqc.zip
457.76 kB
stderr.txt
1.83 kB
iCount RNA-maps
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single.tar.gz
586.89 kB
Paraclu
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single_peaks.bed.gz
8.39 kB
Cutadapt (single-end)
report.txt
699 B
fastqc
Directory
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed.fastq.gz
798.07 MB
STAR
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_unmapped.out.mate1.fastq.gz
215.08 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed.bam
4.84 GB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_stats.txt
1.82 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed.bam.bai
8.45 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_SJ.out.tab
1.43 MB
iCount xlsites
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_skipped.bam
5.07 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single.bedgraph
3.46 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_reads_single.bed.gz
979.05 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single.bed.gz
838.48 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_singleAndMulti.bed.gz
2.49 MB
iCount summary
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single_summary_subtype.tsv
1006 B
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single_summary_gene.tsv
1.09 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single_summary_type.tsv
435 B
iCount summary
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single_summary_subtype.tsv
1011 B
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single_summary_type.tsv
438 B
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single_summary_gene.tsv
1.16 MB
Paraclu
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single_peaks.bed.gz
10.36 kB
iCount RNA-maps
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single.tar.gz
622.83 kB
K-mers
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single.tar.gz
2.54 MB
Cutadapt (single-end)
fastqc
Directory
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed.fastq.gz
953.31 MB
report.txt
699 B
STAR
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_stats.txt
1.82 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_unmapped.out.mate1.fastq.gz
250.36 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed.bam
5.80 GB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed.bam.bai
9.85 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_SJ.out.tab
1.76 MB
iCount xlsites
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_skipped.bam
3.86 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_singleAndMulti.bed.gz
2.94 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single.bed.gz
1.02 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_reads_single.bed.gz
1.19 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single.bedgraph
4.35 MB

Copy of STAU1_HEK293_ab73478 rep 2_20190412_JU

FASTQ file (single-end)
fastqc
Directory
stau1-hek293-ab73478-rep-2-20190412-ju.fastq.gz
432.55 MB
stau1-hek293-ab73478-rep-2-20190412-ju_fastqc.zip
510.94 kB
stderr.txt
1.34 kB
Paraclu
peaks.bed.gz
18.88 kB
K-mers
kmer_frequency_intron.tsv
5.84 kB
positional_distribution_intron.tsv
491.04 kB
other_exon region.png
231.67 kB
positional_distribution_utr3.tsv
320.59 kB
positional_distribution_ncRNA.tsv
232.64 kB
intron region.png
276.12 kB
ncRNA region.png
307.09 kB
kmer_frequency_ncRNA.tsv
5.65 kB
kmer_frequency_utr3.tsv
5.73 kB
kmer_frequency_genome.tsv
5.86 kB
genome region.png
239.30 kB
positional_distribution_other_exon.tsv
138.36 kB
utr3 region.png
319.41 kB
positional_distribution_genome.tsv
541.16 kB
kmer_frequency_other_exon.tsv
3.72 kB
iCount RNA-maps
results.tar.gz
505.29 kB
iCount xlsites
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_singleAndMulti.bed.gz
6.81 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_skipped.bam
7.54 kB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single.bed.gz
1.90 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_reads_single.bed.gz
2.23 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single.bedgraph
8.28 MB
STAR
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed.bam.bai
4.45 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed.bam
1.53 GB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
148.36 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_SJ.out.tab
1.58 MB
Cutadapt (single-end)
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed.fastq.gz
422.00 MB
fastqc
Directory
report.txt
707 B
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_fastqc.zip
495.22 kB
iCount summary
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single_summary_subtype.tsv
1014 B
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single_summary_gene.tsv
1.32 MB
stau1-hek293-ab73478-rep-2-20190412-ju_trimmed_single_summary_type.tsv
436 B

Copy of STAU1_HEK293_ab73478 rep 1_20190412_JU

K-mers
positional_distribution_intron.tsv
484.51 kB
ncRNA region.png
276.95 kB
kmer_frequency_utr3.tsv
5.70 kB
other_exon region.png
173.37 kB
positional_distribution_genome.tsv
541.19 kB
kmer_frequency_intron.tsv
5.87 kB
intron region.png
252.52 kB
utr3 region.png
280.76 kB
positional_distribution_ncRNA.tsv
197.50 kB
kmer_frequency_ncRNA.tsv
5.47 kB
kmer_frequency_other_exon.tsv
3.37 kB
kmer_frequency_genome.tsv
5.90 kB
positional_distribution_other_exon.tsv
131.66 kB
positional_distribution_utr3.tsv
316.66 kB
genome region.png
152.91 kB
iCount summary
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single_summary_type.tsv
435 B
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single_summary_subtype.tsv
1014 B
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single_summary_gene.tsv
1.27 MB
iCount xlsites
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_reads_single.bed.gz
2.01 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_singleAndMulti.bed.gz
6.21 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single.bedgraph
7.41 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_single.bed.gz
1.71 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_skipped.bam
7.04 kB
STAR
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
133.67 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed.bam
1.36 GB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed.bam.bai
4.39 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_SJ.out.tab
1.37 MB
Paraclu
peaks.bed.gz
16.23 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
707 B
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed.fastq.gz
377.74 MB
stau1-hek293-ab73478-rep-1-20190412-ju_trimmed_fastqc.zip
502.51 kB
iCount RNA-maps
results.tar.gz
493.09 kB
FASTQ file (single-end)
fastqc
Directory
stau1-hek293-ab73478-rep-1-20190412-ju.fastq.gz
387.28 MB
stderr.txt
1.34 kB
stau1-hek293-ab73478-rep-1-20190412-ju_fastqc.zip
517.58 kB

Copy of STAU1_HEK293_ab73478_total_rep1_20190906_JU

Paraclu
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single_peaks.bed.gz
6.16 kB
FASTQ file (single-end)
fastqc
Directory
stau1-hek293-ab73478-total-rep1-20190906-ju.fastq.gz
390.66 MB
stau1-hek293-ab73478-total-rep1-20190906-ju_fastqc.zip
464.88 kB
stderr.txt
1.44 kB
K-mers
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single.tar.gz
2.61 MB
iCount summary
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single_summary_subtype.tsv
1001 B
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single_summary_type.tsv
429 B
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single_summary_gene.tsv
1.05 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
679 B
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed.fastq.gz
411.88 MB
iCount xlsites
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single.bed.gz
797.59 kB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_skipped.bam
3.34 kB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_reads_single.bed.gz
926.29 kB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_singleAndMulti.bed.gz
2.76 MB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single.bedgraph
3.23 MB
STAR
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed.bam.bai
5.82 MB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed.bam
2.45 GB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_SJ.out.tab
987.78 kB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_unmapped.out.mate1.fastq.gz
119.91 MB
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_stats.txt
1.81 kB
iCount RNA-maps
stau1-hek293-ab73478-total-rep1-20190906-ju_trimmed_single.tar.gz
506.89 kB

Copy of STAU1_HEK293_ab73478_total_rep2_20190906_JU

FASTQ file (single-end)
fastqc
Directory
stau1-hek293-ab73478-total-rep2-20190906-ju.fastq.gz
418.45 MB
stderr.txt
1.44 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_fastqc.zip
468.85 kB
Paraclu
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single_peaks.bed.gz
6.49 kB
iCount RNA-maps
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single.tar.gz
506.26 kB
K-mers
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single.tar.gz
2.60 MB
iCount summary
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single_summary_type.tsv
427 B
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single_summary_subtype.tsv
1000 B
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single_summary_gene.tsv
1.04 MB
iCount xlsites
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_singleAndMulti.bed.gz
2.78 MB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_skipped.bam
5.32 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single.bed.gz
811.57 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_reads_single.bed.gz
944.47 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_single.bedgraph
3.30 MB
STAR
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed.bam.bai
6.11 MB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_unmapped.out.mate1.fastq.gz
125.67 MB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_stats.txt
1.81 kB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed.bam
2.65 GB
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed_SJ.out.tab
1018.72 kB
Cutadapt (single-end)
stau1-hek293-ab73478-total-rep2-20190906-ju_trimmed.fastq.gz
442.35 MB
report.txt
679 B
fastqc
Directory

Copy of STAU1-nFLAG_293Flp_minus Tg minus hexanediol rep1_20190412_JU

Paraclu
peaks.bed.gz
28.98 kB
iCount xlsites
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_skipped.bam
7.81 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_reads_single.bed.gz
4.18 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single.bed.gz
3.69 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single.bedgraph
16.62 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_singleAndMulti.bed.gz
8.58 MB
iCount summary
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single_summary_type.tsv
442 B
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single_summary_gene.tsv
1.58 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_single_summary_subtype.tsv
1020 B
FASTQ file (single-end)
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju.fastq.gz
768.03 MB
fastqc
Directory
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_fastqc.zip
478.50 kB
stderr.txt
1.79 kB
Cutadapt (single-end)
report.txt
730 B
fastqc
Directory
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed.fastq.gz
764.93 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_fastqc.zip
467.05 kB
STAR
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
227.82 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed.bam
4.34 GB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed.bam.bai
8.16 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_stats.txt
1.82 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep1-20190412-ju_trimmed_SJ.out.tab
3.24 MB
K-mers
intron region.png
323.72 kB
kmer_frequency_genome.tsv
5.98 kB
other_exon region.png
222.02 kB
positional_distribution_intron.tsv
454.90 kB
kmer_frequency_intron.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.88 kB
positional_distribution_utr3.tsv
520.42 kB
ncRNA region.png
319.93 kB
kmer_frequency_utr3.tsv
5.79 kB
positional_distribution_ncRNA.tsv
382.90 kB
utr3 region.png
282.84 kB
kmer_frequency_other_exon.tsv
5.88 kB
genome region.png
164.34 kB
positional_distribution_genome.tsv
570.68 kB
positional_distribution_other_exon.tsv
412.37 kB
iCount RNA-maps
results.tar.gz
975.60 kB

Copy of STAU1-nFLAG_293Flp_minus Tg minus hexanediol rep2_20190412_JU

FASTQ file (single-end)
fastqc
Directory
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_fastqc.zip
476.57 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju.fastq.gz
516.91 MB
stderr.txt
1.79 kB
Paraclu
peaks.bed.gz
18.57 kB
iCount RNA-maps
results.tar.gz
845.08 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
730 B
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed.fastq.gz
512.02 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_fastqc.zip
459.01 kB
STAR
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed.bam
2.88 GB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed.bam.bai
6.50 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
158.79 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_SJ.out.tab
2.23 MB
iCount xlsites
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_skipped.bam
7.22 kB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_reads_single.bed.gz
2.95 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_singleAndMulti.bed.gz
6.61 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single.bedgraph
11.57 MB
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single.bed.gz
2.60 MB
iCount summary
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single_summary_type.tsv
438 B
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single_summary_subtype.tsv
1016 B
stau1-nflag-293flp-minus-tg-minus-hexanediol-rep2-20190412-ju_trimmed_single_summary_gene.tsv
1.47 MB
K-mers
kmer_frequency_intron.tsv
5.91 kB
kmer_frequency_ncRNA.tsv
5.81 kB
positional_distribution_ncRNA.tsv
299.42 kB
other_exon region.png
273.56 kB
intron region.png
299.94 kB
positional_distribution_utr3.tsv
453.81 kB
kmer_frequency_utr3.tsv
5.86 kB
positional_distribution_other_exon.tsv
323.72 kB
positional_distribution_intron.tsv
389.59 kB
utr3 region.png
307.70 kB
kmer_frequency_other_exon.tsv
5.74 kB
kmer_frequency_genome.tsv
5.89 kB
genome region.png
205.54 kB
ncRNA region.png
250.50 kB
positional_distribution_genome.tsv
554.62 kB

Copy of STAU1-nFLAG_293Flp_minus NaAs minus hexanediol rep1_20191115_CM

K-mers
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single.tar.gz
2.62 MB
FASTQ file (single-end)
fastqc
Directory
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm.fastq.gz
753.36 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_fastqc.zip
457.76 kB
stderr.txt
1.83 kB
iCount RNA-maps
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single.tar.gz
586.89 kB
Paraclu
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single_peaks.bed.gz
8.39 kB
Cutadapt (single-end)
report.txt
699 B
fastqc
Directory
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed.fastq.gz
798.07 MB
STAR
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_unmapped.out.mate1.fastq.gz
215.08 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed.bam
4.84 GB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_stats.txt
1.82 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed.bam.bai
8.45 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_SJ.out.tab
1.43 MB
iCount xlsites
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_skipped.bam
5.07 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single.bedgraph
3.46 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_reads_single.bed.gz
979.05 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single.bed.gz
838.48 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_singleAndMulti.bed.gz
2.49 MB
iCount summary
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single_summary_subtype.tsv
1006 B
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single_summary_gene.tsv
1.09 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep1-20191115-cm_trimmed_single_summary_type.tsv
435 B

Copy of STAU1-nFLAG_293Flp_minus NaAs minus hexanediol rep2_20191115_CM

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm.fastq.gz
901.10 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_fastqc.zip
460.89 kB
iCount summary
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single_summary_subtype.tsv
1011 B
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single_summary_type.tsv
438 B
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single_summary_gene.tsv
1.16 MB
Paraclu
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single_peaks.bed.gz
10.36 kB
iCount RNA-maps
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single.tar.gz
622.83 kB
K-mers
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single.tar.gz
2.54 MB
Cutadapt (single-end)
fastqc
Directory
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed.fastq.gz
953.31 MB
report.txt
699 B
STAR
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_stats.txt
1.82 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_unmapped.out.mate1.fastq.gz
250.36 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed.bam
5.80 GB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed.bam.bai
9.85 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_SJ.out.tab
1.76 MB
iCount xlsites
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_skipped.bam
3.86 kB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_singleAndMulti.bed.gz
2.94 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single.bed.gz
1.02 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_reads_single.bed.gz
1.19 MB
stau1-nflag-293flp-minus-naas-minus-hexanediol-rep2-20191115-cm_trimmed_single.bedgraph
4.35 MB

Copy of STAU1_SKmel10_ab73478_total_rep2_20190906_JU

FASTQ file (single-end)
stau1-skmel10-ab73478-total-rep2-20190906-ju.fastq.gz
212.08 MB
fastqc
Directory
stau1-skmel10-ab73478-total-rep2-20190906-ju_fastqc.zip
476.99 kB
stderr.txt
1.46 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed.fastq.gz
223.45 MB
STAR
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_SJ.out.tab
434.67 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_stats.txt
1.81 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed.bam.bai
4.51 MB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed.bam
1.41 GB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_unmapped.out.mate1.fastq.gz
64.17 MB
iCount xlsites
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_skipped.bam
3.51 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_singleAndMulti.bed.gz
1.64 MB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_reads_single.bed.gz
326.72 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single.bedgraph
1.10 MB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single.bed.gz
288.50 kB
K-mers
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single.tar.gz
2.23 MB
iCount summary
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single_summary_type.tsv
426 B
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single_summary_gene.tsv
696.37 kB
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single_summary_subtype.tsv
994 B
Paraclu
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single_peaks.bed.gz
4.26 kB
iCount RNA-maps
stau1-skmel10-ab73478-total-rep2-20190906-ju_trimmed_single.tar.gz
422.52 kB

Copy of STAU1_SKmel10_ab73478 rep 1_20190412_JU

iCount RNA-maps
results.tar.gz
475.21 kB
Paraclu
peaks.bed.gz
5.72 kB
FASTQ file (single-end)
fastqc
Directory
stau1-skmel10-ab73478-rep-1-20190412-ju.fastq.gz
257.95 MB
stderr.txt
1.36 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_fastqc.zip
485.03 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
708 B
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_fastqc.zip
477.04 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed.fastq.gz
253.82 MB
STAR
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed.bam.bai
4.41 MB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
82.72 MB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed.bam
1.27 GB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_SJ.out.tab
600.92 kB
iCount xlsites
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_reads_single.bed.gz
736.39 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single.bedgraph
2.55 MB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_skipped.bam
3.33 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_singleAndMulti.bed.gz
2.77 MB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single.bed.gz
638.10 kB
iCount summary
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single_summary_gene.tsv
975.14 kB
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single_summary_type.tsv
432 B
stau1-skmel10-ab73478-rep-1-20190412-ju_trimmed_single_summary_subtype.tsv
1000 B
K-mers
kmer_frequency_ncRNA.tsv
5.80 kB
kmer_frequency_intron.tsv
5.71 kB
positional_distribution_intron.tsv
278.68 kB
kmer_frequency_utr3.tsv
3.51 kB
positional_distribution_genome.tsv
491.72 kB
positional_distribution_ncRNA.tsv
325.27 kB
ncRNA region.png
274.96 kB
other_exon region.png
210.01 kB
intron region.png
307.10 kB
positional_distribution_utr3.tsv
143.28 kB
kmer_frequency_genome.tsv
5.91 kB
positional_distribution_other_exon.tsv
124.75 kB
utr3 region.png
157.19 kB
genome region.png
220.08 kB
kmer_frequency_other_exon.tsv
3.26 kB

Copy of STAU1_SKmel10_ab73478 rep 2_20190412_JU

K-mers
intron region.png
273.53 kB
kmer_frequency_genome.tsv
5.89 kB
other_exon region.png
196.05 kB
positional_distribution_intron.tsv
335.82 kB
kmer_frequency_intron.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.85 kB
ncRNA region.png
274.99 kB
positional_distribution_ncRNA.tsv
359.65 kB
utr3 region.png
228.52 kB
kmer_frequency_utr3.tsv
4.71 kB
positional_distribution_other_exon.tsv
154.23 kB
positional_distribution_genome.tsv
518.55 kB
kmer_frequency_other_exon.tsv
4.33 kB
positional_distribution_utr3.tsv
172.15 kB
genome region.png
217.79 kB
iCount RNA-maps
results.tar.gz
491.90 kB
Paraclu
peaks.bed.gz
7.74 kB
FASTQ file (single-end)
fastqc
Directory
stau1-skmel10-ab73478-rep-2-20190412-ju.fastq.gz
350.66 MB
stderr.txt
1.36 kB
stau1-skmel10-ab73478-rep-2-20190412-ju_fastqc.zip
493.14 kB
Cutadapt (single-end)
report.txt
708 B
fastqc
Directory
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed.fastq.gz
347.03 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_fastqc.zip
478.32 kB
STAR
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_unmapped.out.mate1.fastq.gz
114.44 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed.bam.bai
4.91 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_stats.txt
1.81 kB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed.bam
1.73 GB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_SJ.out.tab
807.89 kB
iCount xlsites
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single.bed.gz
828.92 kB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_skipped.bam
4.36 kB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single.bedgraph
3.37 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_singleAndMulti.bed.gz
3.36 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_reads_single.bed.gz
961.64 kB
iCount summary
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single_summary_subtype.tsv
1005 B
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single_summary_gene.tsv
1.04 MB
stau1-skmel10-ab73478-rep-2-20190412-ju_trimmed_single_summary_type.tsv
432 B

Copy of STAU1_SKmel10_ab73478_total_rep1_20190906_JU

Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed.fastq.gz
286.48 MB
STAR
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed.bam.bai
5.07 MB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed.bam
1.88 GB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_unmapped.out.mate1.fastq.gz
81.59 MB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_SJ.out.tab
518.48 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_stats.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.46 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_fastqc.zip
465.16 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju.fastq.gz
271.56 MB
iCount xlsites
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_reads_single.bed.gz
360.55 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_skipped.bam
4.03 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single.bed.gz
317.72 kB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_singleAndMulti.bed.gz
1.69 MB
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single.bedgraph
1.22 MB
Paraclu
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single_peaks.bed.gz
4.69 kB
iCount RNA-maps
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single.tar.gz
429.11 kB
K-mers
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single.tar.gz
2.59 MB
iCount summary
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single_summary_subtype.tsv
987 B
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single_summary_type.tsv
423 B
stau1-skmel10-ab73478-total-rep1-20190906-ju_trimmed_single_summary_gene.tsv
738.47 kB