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Folder iconMatrin3 and Rbm20 in mouse cardiomyocytes

Julian Zagalak
Oct. 20, 2020

WIL1203A2-A31_S99_L004_R1_001.fastq.gz

FASTQ file (single-end)
WIL1203A2-A31_S99_L004_R1_001.fastq.gz
15.52 GB
WIL1203A2-A31_S99_L004_R1_001_fastqc.zip
536.22 kB
fastqc
Directory
stderr.txt
1.23 kB
iCount summary
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single_summary_type.tsv
591 B
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single_summary_subtype.tsv
852 B
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single_summary_gene.tsv
808.80 kB
Paraclu
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single_peaks.bed.gz
162 B
Cutadapt (single-end)
report.txt
670 B
WIL1203A2-A31_S99_L004_R1_001_trimmed.fastq.gz
12.78 GB
fastqc
Directory
STAR
WIL1203A2-A31_S99_L004_R1_001_trimmed_unmapped.out.mate1.fastq.gz
12.71 GB
WIL1203A2-A31_S99_L004_R1_001_trimmed.bam.bai
2.66 MB
WIL1203A2-A31_S99_L004_R1_001_trimmed.bam
14.61 GB
WIL1203A2-A31_S99_L004_R1_001_trimmed_stats.txt
1.80 kB
WIL1203A2-A31_S99_L004_R1_001_trimmed_SJ.out.tab
228.96 kB
WIL1203A2-A31_S99_L004_R1_001_trimmed.bw
31.26 kB
PEKA
4mer analysis of WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome.tar.gz
168 B
iCount RNA-maps
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single.tar.gz
388.98 kB
iCount xlsites
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_skipped.bam
9.95 kB
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single.bed.gz
329.57 kB
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_singleAndMulti.bed.gz
1.11 MB
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_reads_single.bed.gz
347.82 kB
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single.bedgraph
1.22 MB

demux_nomatch.fastq.gz

FASTQ file (CLIP)
fastqc
Directory
demux_nomatch_fastqc.zip
543.43 kB
demux_nomatch.fastq.gz
10.65 GB

demux_nomatch.fastq.gz

FASTQ file (CLIP)
demux_nomatch.fastq.gz
18.36 MB
fastqc
Directory
demux_nomatch_fastqc.zip
587.53 kB

HuR-HL1-unmapped_to_mm10

FASTQ file (single-end)
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1.fastq.gz
76.17 MB
fastqc
Directory
stderr.txt
1.67 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_fastqc.zip
597.82 kB
Paraclu
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single_peaks.bed.gz
534 B
PEKA
4mer analysis of hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome.tar.gz
173 B
iCount RNA-maps
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single.tar.gz
311.71 kB
Cutadapt (single-end)
report.txt
689 B
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed.fastq.gz
76.17 MB
fastqc
Directory
iCount xlsites
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_skipped.bam
3.07 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single.bed.gz
45.78 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_singleAndMulti.bed.gz
218.56 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_reads_single.bed.gz
50.38 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single.bedgraph
153.55 kB
STAR
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed_unmapped.out.mate1.fastq.gz
73.15 MB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed.bam.bai
1.86 MB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed.bam
97.36 MB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed_stats.txt
1.80 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed_SJ.out.tab
16.06 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed.bw
19.48 kB
iCount summary
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single_summary_type.tsv
581 B
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single_summary_subtype.tsv
893 B
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single_summary_gene.tsv
272.06 kB

No Sample

Upload iCount sample annotation
PM20172_imaps_annotation.xlsx
222.71 kB
PM20172_imaps_annotation.tab.gz
943 B
FASTQ file (single-end)
WIL1203A2-A31_S99_L004_R1_001.fastq.gz
15.52 GB
WIL1203A2-A31_S99_L004_R1_001_fastqc.zip
536.22 kB
fastqc
Directory
stderr.txt
1.23 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
441 B
FASTQ file (CLIP)
fastqc
Directory
demux_nomatch_fastqc.zip
543.43 kB
demux_nomatch.fastq.gz
10.65 GB
FASTQ file (single-end)
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1.fastq.gz
76.17 MB
fastqc
Directory
stderr.txt
1.67 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_fastqc.zip
597.82 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
206 B
Upload iCount sample annotation
PM20172_imaps_annotation_msHuR_mismap_on_hg38.xlsx
221.81 kB
PM20172_imaps_annotation_msHuR_mismap_on_hg38.tab.gz
804 B
FASTQ file (CLIP)
demux_nomatch.fastq.gz
18.36 MB
fastqc
Directory
demux_nomatch_fastqc.zip
587.53 kB
Paraclu
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single_peaks.bed.gz
534 B
PEKA
4mer analysis of hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome.tar.gz
173 B
iCount RNA-maps
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single.tar.gz
311.71 kB
Cutadapt (single-end)
report.txt
689 B
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed.fastq.gz
76.17 MB
fastqc
Directory
iCount xlsites
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_skipped.bam
3.07 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single.bed.gz
45.78 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_singleAndMulti.bed.gz
218.56 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_reads_single.bed.gz
50.38 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single.bedgraph
153.55 kB
STAR
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed_unmapped.out.mate1.fastq.gz
73.15 MB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed.bam.bai
1.86 MB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed.bam
97.36 MB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed_stats.txt
1.80 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed_SJ.out.tab
16.06 kB
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_trimmed.bw
19.48 kB
iCount summary
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single_summary_type.tsv
581 B
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single_summary_subtype.tsv
893 B
hur-temp-hl-1-20200910-jz_trimmed_unmapped.out.mate1_mapped_to_genome_single_summary_gene.tsv
272.06 kB
Upload iCount sample annotation
PM20172_imaps_annotation_mouse_on_hg38.xlsx
222.69 kB
PM20172_imaps_annotation_mouse_on_hg38.tab.gz
957 B
iCount summary
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single_summary_type.tsv
591 B
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single_summary_subtype.tsv
852 B
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single_summary_gene.tsv
808.80 kB
Paraclu
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single_peaks.bed.gz
162 B
Cutadapt (single-end)
report.txt
670 B
WIL1203A2-A31_S99_L004_R1_001_trimmed.fastq.gz
12.78 GB
fastqc
Directory
STAR
WIL1203A2-A31_S99_L004_R1_001_trimmed_unmapped.out.mate1.fastq.gz
12.71 GB
WIL1203A2-A31_S99_L004_R1_001_trimmed.bam.bai
2.66 MB
WIL1203A2-A31_S99_L004_R1_001_trimmed.bam
14.61 GB
WIL1203A2-A31_S99_L004_R1_001_trimmed_stats.txt
1.80 kB
WIL1203A2-A31_S99_L004_R1_001_trimmed_SJ.out.tab
228.96 kB
WIL1203A2-A31_S99_L004_R1_001_trimmed.bw
31.26 kB
PEKA
4mer analysis of WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome.tar.gz
168 B
iCount RNA-maps
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single.tar.gz
388.98 kB
iCount xlsites
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_skipped.bam
9.95 kB
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single.bed.gz
329.57 kB
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_singleAndMulti.bed.gz
1.11 MB
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_reads_single.bed.gz
347.82 kB
WIL1203A2-A31_S99_L004_R1_001_mapped_to_genome_single.bedgraph
1.22 MB