Back to Archive

Folder iconELAVL1-4 iCLIP rat brain

Flora Lee
Sept. 22, 2020

No Sample

K-mers
merged-reads-22_unmapped.tar.gz
496.50 kB
iCount xlsites
merged-reads-22_unmapped_single.bed.gz
17.33 MB
merged-reads-22_unmapped_singleAndMulti.bed.gz
33.75 MB
merged-reads-22_unmapped_skipped.bam
14.33 kB
merged-reads-22_unmapped_single.bedgraph
82.18 MB
merged-reads-22_unmapped_reads_single.bed.gz
18.38 MB
Merge resequenced reads (single-end)
fastqc
Directory
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_fastqc.zip
462.47 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged.fastq.gz
192.30 MB
PEKA
5mer analysis of merged-reads-21_unmapped.tar.gz
1.47 MB
STAR
merged-reads-22_unmapped_unmapped.out.mate1.fastq.gz
92.13 MB
merged-reads-22_unmapped.bam.bai
2.30 MB
merged-reads-22_unmapped_stats.txt
1.81 kB
merged-reads-22_unmapped.bam
576.63 MB
merged-reads-22_unmapped_SJ.out.tab
1.29 MB
iCount RNA-maps
merged-reads-22_unmapped_single.tar.gz
1.25 MB
Paraclu
merged-reads-23_unmapped_single_peaks.bed.gz
243.63 kB
PEKA
5mer analysis of merged-reads-29_unmapped.tar.gz
1.38 MB
Merge resequenced reads (single-end)
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged.fastq.gz
348.31 MB
fastqc
Directory
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_fastqc.zip
474.49 kB
iCount RNA-maps
merged-reads-29_unmapped_single.tar.gz
1.23 MB
iCount summary
merged-reads-29_unmapped_single_summary_type.tsv
480 B
merged-reads-29_unmapped_single_summary_subtype.tsv
1.04 kB
merged-reads-29_unmapped_single_summary_gene.tsv
1.51 MB
Paraclu
merged-reads-30_unmapped_single_peaks.bed.gz
339.11 kB
Merge resequenced reads (single-end)
fastqc
Directory
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged.fastq.gz
355.92 MB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_fastqc.zip
478.92 kB
Merge resequenced reads (single-end)
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged.fastq.gz
347.80 MB
fastqc
Directory
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_fastqc.zip
479.16 kB
iCount xlsites
merged-reads-31_unmapped_skipped.bam
14.96 kB
merged-reads-31_unmapped_single.bed.gz
14.92 MB
merged-reads-31_unmapped_singleAndMulti.bed.gz
52.28 MB
merged-reads-31_unmapped_reads_single.bed.gz
15.82 MB
merged-reads-31_unmapped_single.bedgraph
68.11 MB
STAR
merged-reads-31_unmapped_unmapped.out.mate1.fastq.gz
96.60 MB
merged-reads-31_unmapped.bam.bai
2.10 MB
merged-reads-31_unmapped.bam
692.95 MB
merged-reads-31_unmapped_stats.txt
1.81 kB
merged-reads-31_unmapped_SJ.out.tab
1.87 MB
Cutadapt (single-end)
report.txt
706 B
fastqc
Directory
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
482.50 MB
iCount RNA-maps
merged-reads-21_unmapped_single.tar.gz
1.22 MB
iCount xlsites
merged-reads-21_unmapped_reads_single.bed.gz
21.12 MB
merged-reads-21_unmapped_single.bedgraph
95.19 MB
merged-reads-21_unmapped_skipped.bam
16.78 kB
merged-reads-21_unmapped_singleAndMulti.bed.gz
44.07 MB
merged-reads-21_unmapped_single.bed.gz
19.97 MB
STAR
merged-reads-21_unmapped.bam.bai
2.13 MB
merged-reads-21_unmapped_unmapped.out.mate1.fastq.gz
156.13 MB
merged-reads-21_unmapped.bam
817.18 MB
merged-reads-21_unmapped_SJ.out.tab
1.81 MB
merged-reads-21_unmapped_stats.txt
1.81 kB
iCount xlsites
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
55.80 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
97.22 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
56.97 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
284 B
Paraclu
merged-reads-22_unmapped_single_peaks.bed.gz
482.83 kB
iCount reads proxy
fastqc
Directory
merged-reads-22_unmapped.fastq.gz
362.61 MB
stderr.txt
1.13 kB
merged-reads-22_unmapped_fastqc.zip
463.85 kB
Merge resequenced reads (single-end)
fastqc
Directory
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_fastqc.zip
471.26 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged.fastq.gz
364.48 MB
iCount reads proxy
merged-reads-21_unmapped_fastqc.zip
472.92 kB
fastqc
Directory
merged-reads-21_unmapped.fastq.gz
476.12 MB
stderr.txt
1.13 kB
iCount RNA-maps
merged-reads-23_unmapped_single.tar.gz
829.76 kB
STAR
merged-reads-23_unmapped_stats.txt
1.81 kB
merged-reads-23_unmapped_unmapped.out.mate1.fastq.gz
62.44 MB
merged-reads-23_unmapped.bam
303.63 MB
merged-reads-23_unmapped.bam.bai
2.83 MB
merged-reads-23_unmapped_SJ.out.tab
563.72 kB
STAR
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bam
503.01 MB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
341.37 MB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bw
221.69 kB
iCount summary
merged-reads-30_unmapped_single_summary_type.tsv
479 B
merged-reads-30_unmapped_single_summary_subtype.tsv
1.04 kB
merged-reads-30_unmapped_single_summary_gene.tsv
1.52 MB
STAR
merged-reads-30_unmapped.bam.bai
2.07 MB
merged-reads-30_unmapped.bam
757.44 MB
merged-reads-30_unmapped_stats.txt
1.81 kB
merged-reads-30_unmapped_SJ.out.tab
1.83 MB
merged-reads-30_unmapped_unmapped.out.mate1.fastq.gz
116.74 MB
iCount xlsites
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
80.83 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
82.46 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
174.27 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
266 B
iCount RNA-maps
merged-reads-30_unmapped_single.tar.gz
1.28 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
698 B
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
351.60 MB
K-mers
merged-reads-31_unmapped.tar.gz
471.55 kB
iCount RNA-maps
merged-reads-31_unmapped_single.tar.gz
1.34 MB
iCount xlsites
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
54.16 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
101.79 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
55.31 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
284 B
K-mers
merged-reads-23_unmapped.tar.gz
451.12 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.13 kB
merged-reads-29_unmapped.fastq.gz
335.36 MB
merged-reads-29_unmapped_fastqc.zip
472.82 kB
iCount xlsites
merged-reads-29_unmapped_single.bed.gz
14.91 MB
merged-reads-29_unmapped_skipped.bam
14.17 kB
merged-reads-29_unmapped_reads_single.bed.gz
15.77 MB
merged-reads-29_unmapped_singleAndMulti.bed.gz
59.89 MB
merged-reads-29_unmapped_single.bedgraph
67.78 MB
K-mers
merged-reads-29_unmapped.tar.gz
475.61 kB
STAR
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bam
492.40 MB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
335.36 MB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
K-mers
merged-reads-30_unmapped.tar.gz
482.72 kB
Paraclu
merged-reads-31_unmapped_single_peaks.bed.gz
357.32 kB
STAR
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
476.12 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bam
609.27 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bw
221.30 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
Paraclu
merged-reads-21_unmapped_single_peaks.bed.gz
642.81 kB
iCount summary
merged-reads-21_unmapped_single_summary_subtype.tsv
1.04 kB
merged-reads-21_unmapped_single_summary_type.tsv
475 B
merged-reads-21_unmapped_single_summary_gene.tsv
1.43 MB
K-mers
merged-reads-21_unmapped.tar.gz
502.04 kB
STAR
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
362.61 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bam
459.09 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bw
221.12 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
iCount summary
merged-reads-22_unmapped_single_summary_type.tsv
483 B
merged-reads-22_unmapped_single_summary_subtype.tsv
1.05 kB
merged-reads-22_unmapped_single_summary_gene.tsv
1.37 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
706 B
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
371.24 MB
iCount xlsites
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
46.87 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
286 B
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
31.42 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
30.67 kB
STAR
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
193.31 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bam
238.72 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bw
220.72 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
Cutadapt (single-end)
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
194.77 MB
fastqc
Directory
report.txt
707 B
iCount summary
merged-reads-23_unmapped_single_summary_subtype.tsv
1.03 kB
merged-reads-23_unmapped_single_summary_type.tsv
473 B
merged-reads-23_unmapped_single_summary_gene.tsv
1.18 MB
iCount xlsites
merged-reads-23_unmapped_reads_single.bed.gz
8.79 MB
merged-reads-23_unmapped_singleAndMulti.bed.gz
15.75 MB
merged-reads-23_unmapped_single.bed.gz
8.24 MB
merged-reads-23_unmapped_single.bedgraph
38.97 MB
merged-reads-23_unmapped_skipped.bam
14.35 kB
iCount reads proxy
fastqc
Directory
merged-reads-23_unmapped.fastq.gz
193.31 MB
merged-reads-23_unmapped_fastqc.zip
467.85 kB
stderr.txt
1.13 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
697 B
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
349.37 MB
Paraclu
merged-reads-29_unmapped_single_peaks.bed.gz
346.64 kB
STAR
merged-reads-29_unmapped_unmapped.out.mate1.fastq.gz
108.93 MB
merged-reads-29_unmapped.bam
761.68 MB
merged-reads-29_unmapped.bam.bai
2.10 MB
merged-reads-29_unmapped_stats.txt
1.81 kB
merged-reads-29_unmapped_SJ.out.tab
1.80 MB
iCount xlsites
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
79.47 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
80.75 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
266 B
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
170.88 kB
Cutadapt (single-end)
fastqc
Directory
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
357.80 MB
report.txt
697 B
iCount reads proxy
fastqc
Directory
stderr.txt
1.13 kB
merged-reads-30_unmapped.fastq.gz
341.37 MB
merged-reads-30_unmapped_fastqc.zip
489.67 kB
iCount xlsites
merged-reads-30_unmapped_skipped.bam
14.05 kB
merged-reads-30_unmapped_single.bed.gz
15.07 MB
merged-reads-30_unmapped_singleAndMulti.bed.gz
58.29 MB
merged-reads-30_unmapped_reads_single.bed.gz
15.95 MB
merged-reads-30_unmapped_single.bedgraph
68.55 MB
iCount summary
merged-reads-31_unmapped_single_summary_type.tsv
474 B
merged-reads-31_unmapped_single_summary_subtype.tsv
1.04 kB
merged-reads-31_unmapped_single_summary_gene.tsv
1.51 MB
STAR
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
326.10 MB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bam
473.25 MB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bw
221.61 kB
iCount reads proxy
stderr.txt
1.13 kB
fastqc
Directory
merged-reads-31_unmapped.fastq.gz
326.10 MB
merged-reads-31_unmapped_fastqc.zip
466.76 kB
iCount xlsites
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
162.59 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
80.70 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
83.01 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
268 B
Merge resequenced reads (single-end)
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged.fastq.gz
480.30 MB
fastqc
Directory
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_fastqc.zip
465.76 kB

Copy of ELAVL4_cortex:5week_WT_0.4U_176_20191125_FLreseq-Resequenced

Merge resequenced reads (single-end)
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged.fastq.gz
347.80 MB
fastqc
Directory
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_fastqc.zip
479.16 kB
iCount xlsites
merged-reads-31_unmapped_skipped.bam
14.96 kB
merged-reads-31_unmapped_single.bed.gz
14.92 MB
merged-reads-31_unmapped_singleAndMulti.bed.gz
52.28 MB
merged-reads-31_unmapped_reads_single.bed.gz
15.82 MB
merged-reads-31_unmapped_single.bedgraph
68.11 MB
STAR
merged-reads-31_unmapped_unmapped.out.mate1.fastq.gz
96.60 MB
merged-reads-31_unmapped.bam.bai
2.10 MB
merged-reads-31_unmapped.bam
692.95 MB
merged-reads-31_unmapped_stats.txt
1.81 kB
merged-reads-31_unmapped_SJ.out.tab
1.87 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
698 B
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
351.60 MB
K-mers
merged-reads-31_unmapped.tar.gz
471.55 kB
iCount RNA-maps
merged-reads-31_unmapped_single.tar.gz
1.34 MB
Paraclu
merged-reads-31_unmapped_single_peaks.bed.gz
357.32 kB
iCount summary
merged-reads-31_unmapped_single_summary_type.tsv
474 B
merged-reads-31_unmapped_single_summary_subtype.tsv
1.04 kB
merged-reads-31_unmapped_single_summary_gene.tsv
1.51 MB
STAR
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
326.10 MB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bam
473.25 MB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bw
221.61 kB
iCount reads proxy
stderr.txt
1.13 kB
fastqc
Directory
merged-reads-31_unmapped.fastq.gz
326.10 MB
merged-reads-31_unmapped_fastqc.zip
466.76 kB
iCount xlsites
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
162.59 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
80.70 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
83.01 kB
elavl4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
268 B

Copy of ELAVL1:ELAVL1-4_cortex:5week_WT_0.4U_92_20191125_FLreseq-Resequenced

K-mers
merged-reads-22_unmapped.tar.gz
496.50 kB
iCount xlsites
merged-reads-22_unmapped_single.bed.gz
17.33 MB
merged-reads-22_unmapped_singleAndMulti.bed.gz
33.75 MB
merged-reads-22_unmapped_skipped.bam
14.33 kB
merged-reads-22_unmapped_single.bedgraph
82.18 MB
merged-reads-22_unmapped_reads_single.bed.gz
18.38 MB
STAR
merged-reads-22_unmapped_unmapped.out.mate1.fastq.gz
92.13 MB
merged-reads-22_unmapped.bam.bai
2.30 MB
merged-reads-22_unmapped_stats.txt
1.81 kB
merged-reads-22_unmapped.bam
576.63 MB
merged-reads-22_unmapped_SJ.out.tab
1.29 MB
iCount RNA-maps
merged-reads-22_unmapped_single.tar.gz
1.25 MB
iCount xlsites
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
55.80 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
97.22 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
56.97 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
284 B
Paraclu
merged-reads-22_unmapped_single_peaks.bed.gz
482.83 kB
iCount reads proxy
fastqc
Directory
merged-reads-22_unmapped.fastq.gz
362.61 MB
stderr.txt
1.13 kB
merged-reads-22_unmapped_fastqc.zip
463.85 kB
Merge resequenced reads (single-end)
fastqc
Directory
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_fastqc.zip
471.26 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged.fastq.gz
364.48 MB
STAR
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
362.61 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bam
459.09 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bw
221.12 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
iCount summary
merged-reads-22_unmapped_single_summary_type.tsv
483 B
merged-reads-22_unmapped_single_summary_subtype.tsv
1.05 kB
merged-reads-22_unmapped_single_summary_gene.tsv
1.37 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
706 B
elavl1-elavl1-4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
371.24 MB

Copy of ELAVL4_cortex:5week_WT_0.4U_92_20191125_FLreseq-Resequenced

Paraclu
merged-reads-30_unmapped_single_peaks.bed.gz
339.11 kB
Merge resequenced reads (single-end)
fastqc
Directory
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged.fastq.gz
355.92 MB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_fastqc.zip
478.92 kB
STAR
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bam
503.01 MB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
341.37 MB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.bw
221.69 kB
iCount summary
merged-reads-30_unmapped_single_summary_type.tsv
479 B
merged-reads-30_unmapped_single_summary_subtype.tsv
1.04 kB
merged-reads-30_unmapped_single_summary_gene.tsv
1.52 MB
STAR
merged-reads-30_unmapped.bam.bai
2.07 MB
merged-reads-30_unmapped.bam
757.44 MB
merged-reads-30_unmapped_stats.txt
1.81 kB
merged-reads-30_unmapped_SJ.out.tab
1.83 MB
merged-reads-30_unmapped_unmapped.out.mate1.fastq.gz
116.74 MB
iCount xlsites
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
80.83 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
82.46 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
174.27 kB
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
266 B
iCount RNA-maps
merged-reads-30_unmapped_single.tar.gz
1.28 MB
K-mers
merged-reads-30_unmapped.tar.gz
482.72 kB
Cutadapt (single-end)
fastqc
Directory
elavl4-cortex-5week-wt-0-4u-92-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
357.80 MB
report.txt
697 B
iCount reads proxy
fastqc
Directory
stderr.txt
1.13 kB
merged-reads-30_unmapped.fastq.gz
341.37 MB
merged-reads-30_unmapped_fastqc.zip
489.67 kB
iCount xlsites
merged-reads-30_unmapped_skipped.bam
14.05 kB
merged-reads-30_unmapped_single.bed.gz
15.07 MB
merged-reads-30_unmapped_singleAndMulti.bed.gz
58.29 MB
merged-reads-30_unmapped_reads_single.bed.gz
15.95 MB
merged-reads-30_unmapped_single.bedgraph
68.55 MB

Copy of ELAVL4_cortex:5week_WT_0.4U_84_20191125_FLreseq-Resequenced

PEKA
5mer analysis of merged-reads-29_unmapped.tar.gz
1.38 MB
Merge resequenced reads (single-end)
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged.fastq.gz
348.31 MB
fastqc
Directory
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_fastqc.zip
474.49 kB
iCount RNA-maps
merged-reads-29_unmapped_single.tar.gz
1.23 MB
iCount summary
merged-reads-29_unmapped_single_summary_type.tsv
480 B
merged-reads-29_unmapped_single_summary_subtype.tsv
1.04 kB
merged-reads-29_unmapped_single_summary_gene.tsv
1.51 MB
iCount reads proxy
fastqc
Directory
stderr.txt
1.13 kB
merged-reads-29_unmapped.fastq.gz
335.36 MB
merged-reads-29_unmapped_fastqc.zip
472.82 kB
iCount xlsites
merged-reads-29_unmapped_single.bed.gz
14.91 MB
merged-reads-29_unmapped_skipped.bam
14.17 kB
merged-reads-29_unmapped_reads_single.bed.gz
15.77 MB
merged-reads-29_unmapped_singleAndMulti.bed.gz
59.89 MB
merged-reads-29_unmapped_single.bedgraph
67.78 MB
K-mers
merged-reads-29_unmapped.tar.gz
475.61 kB
STAR
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bam
492.40 MB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
335.36 MB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
Cutadapt (single-end)
fastqc
Directory
report.txt
697 B
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
349.37 MB
Paraclu
merged-reads-29_unmapped_single_peaks.bed.gz
346.64 kB
STAR
merged-reads-29_unmapped_unmapped.out.mate1.fastq.gz
108.93 MB
merged-reads-29_unmapped.bam
761.68 MB
merged-reads-29_unmapped.bam.bai
2.10 MB
merged-reads-29_unmapped_stats.txt
1.81 kB
merged-reads-29_unmapped_SJ.out.tab
1.80 MB
iCount xlsites
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
79.47 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
80.75 kB
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
266 B
elavl4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
170.88 kB

Copy of ELAVL1:ELAVL1-4_cortex:5week_WT_0.4U_176_20191125_FLreseq-Resequenced

Merge resequenced reads (single-end)
fastqc
Directory
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_fastqc.zip
462.47 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged.fastq.gz
192.30 MB
Paraclu
merged-reads-23_unmapped_single_peaks.bed.gz
243.63 kB
iCount RNA-maps
merged-reads-23_unmapped_single.tar.gz
829.76 kB
STAR
merged-reads-23_unmapped_stats.txt
1.81 kB
merged-reads-23_unmapped_unmapped.out.mate1.fastq.gz
62.44 MB
merged-reads-23_unmapped.bam
303.63 MB
merged-reads-23_unmapped.bam.bai
2.83 MB
merged-reads-23_unmapped_SJ.out.tab
563.72 kB
K-mers
merged-reads-23_unmapped.tar.gz
451.12 kB
iCount xlsites
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
46.87 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
286 B
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
31.42 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
30.67 kB
STAR
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
193.31 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bam
238.72 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.bw
220.72 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
Cutadapt (single-end)
elavl1-elavl1-4-cortex-5week-wt-0-4u-176-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
194.77 MB
fastqc
Directory
report.txt
707 B
iCount summary
merged-reads-23_unmapped_single_summary_subtype.tsv
1.03 kB
merged-reads-23_unmapped_single_summary_type.tsv
473 B
merged-reads-23_unmapped_single_summary_gene.tsv
1.18 MB
iCount xlsites
merged-reads-23_unmapped_reads_single.bed.gz
8.79 MB
merged-reads-23_unmapped_singleAndMulti.bed.gz
15.75 MB
merged-reads-23_unmapped_single.bed.gz
8.24 MB
merged-reads-23_unmapped_single.bedgraph
38.97 MB
merged-reads-23_unmapped_skipped.bam
14.35 kB
iCount reads proxy
fastqc
Directory
merged-reads-23_unmapped.fastq.gz
193.31 MB
merged-reads-23_unmapped_fastqc.zip
467.85 kB
stderr.txt
1.13 kB

Copy of ELAVL1:ELAVL1-4_cortex:5week_WT_0.4U_84_20191125_FLreseq-Resequenced

PEKA
5mer analysis of merged-reads-21_unmapped.tar.gz
1.47 MB
Cutadapt (single-end)
report.txt
706 B
fastqc
Directory
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.fastq.gz
482.50 MB
iCount RNA-maps
merged-reads-21_unmapped_single.tar.gz
1.22 MB
iCount xlsites
merged-reads-21_unmapped_reads_single.bed.gz
21.12 MB
merged-reads-21_unmapped_single.bedgraph
95.19 MB
merged-reads-21_unmapped_skipped.bam
16.78 kB
merged-reads-21_unmapped_singleAndMulti.bed.gz
44.07 MB
merged-reads-21_unmapped_single.bed.gz
19.97 MB
STAR
merged-reads-21_unmapped.bam.bai
2.13 MB
merged-reads-21_unmapped_unmapped.out.mate1.fastq.gz
156.13 MB
merged-reads-21_unmapped.bam
817.18 MB
merged-reads-21_unmapped_SJ.out.tab
1.81 MB
merged-reads-21_unmapped_stats.txt
1.81 kB
iCount xlsites
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_skipped.bam
4.81 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_single.bed.gz
54.16 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_singleAndMulti.bed.gz
101.79 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_reads_single.bed.gz
55.31 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_single.bedgraph
284 B
iCount reads proxy
fastqc
Directory
merged-reads-21_unmapped.fastq.gz
476.12 MB
stderr.txt
1.13 kB
merged-reads-21_unmapped_fastqc.zip
472.92 kB
STAR
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_unmapped.out.mate1.fastq.gz
476.12 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bam
609.27 MB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_stats.txt
1.78 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bam.bai
19.70 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed.bw
221.30 kB
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_trimmed_SJ.out.tab
0 B
Paraclu
merged-reads-21_unmapped_single_peaks.bed.gz
642.81 kB
iCount summary
merged-reads-21_unmapped_single_summary_subtype.tsv
1.04 kB
merged-reads-21_unmapped_single_summary_type.tsv
475 B
merged-reads-21_unmapped_single_summary_gene.tsv
1.43 MB
K-mers
merged-reads-21_unmapped.tar.gz
502.04 kB
Merge resequenced reads (single-end)
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged.fastq.gz
480.30 MB
fastqc
Directory
elavl1-elavl1-4-cortex-5week-wt-0-4u-84-20191125-flreseqfastqgz_merged_fastqc.zip
465.76 kB