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Folder icon4SU-iCLIP of MATR3 and hnRNPC

Rahul Arora
Aug. 4, 2020

MATR3_Hela_5min 6perc HD 10perc HD in IP_0.4U RNase I_20180828_JU

STAR
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.71 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
1.44 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
131.37 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed.bam
603.20 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
iCount RNA-maps
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.12 MB
Paraclu
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
31.87 kB
PEKA
4mer analysis of matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
586.49 kB
iCount summary
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.16 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
440 B
iCount xlsites
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
4.14 kB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
13.47 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
36.34 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
61.09 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
14.75 MB
Cutadapt (single-end)
fastqc
Directory
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
325.37 MB
report.txt
703 B
FASTQ file (CLIP)
fastqc
Directory
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_fastqc.zip
488.56 kB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju.fastq.gz
348.91 MB

MATR3_Hela_5min 6perc HD_0.4U RNase I_20180828_JU

FASTQ file (CLIP)
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_fastqc.zip
521.45 kB
fastqc
Directory
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju.fastq.gz
208.84 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
181.12 MB
STAR
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam
414.15 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
74.68 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
843.48 kB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
3.20 MB
iCount RNA-maps
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
903.49 kB
PEKA
4mer analysis of matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
529.50 kB
Paraclu
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
19.95 kB
iCount summary
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1018 B
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
1.93 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
439 B
iCount xlsites
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
8.88 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
40.07 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
23.23 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
9.48 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
3.79 kB

MATR3_Hela_10perc HD_0.4U RNase I_20180828_JU

Cutadapt (single-end)
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
227.31 MB
fastqc
Directory
report.txt
683 B
STAR
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
1.33 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam
486.25 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
84.43 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.34 MB
Paraclu
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
42.69 kB
iCount RNA-maps
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.17 MB
PEKA
4mer analysis of matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
574.60 kB
iCount summary
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.25 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
439 B
iCount xlsites
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
18.14 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
17.42 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
79.98 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
43.39 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
4.77 kB
FASTQ file (CLIP)
fastqc
Directory
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju.fastq.gz
240.55 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_fastqc.zip
474.06 kB

MATR3_Hela_SC antibody_0.4U RNase I_20180828_JU

FASTQ file (CLIP)
fastqc
Directory
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju.fastq.gz
289.57 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_fastqc.zip
478.95 kB
iCount RNA-maps
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.19 MB
Cutadapt (single-end)
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
277.21 MB
fastqc
Directory
report.txt
685 B
STAR
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed.bam
527.51 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.46 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
111.31 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
1.33 MB
iCount xlsites
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
17.66 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
4.44 kB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
18.64 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
81.32 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
41.09 MB
Paraclu
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
41.80 kB
PEKA
4mer analysis of matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
585.41 kB
iCount summary
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
440 B
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.23 MB

HNRNPC_Hela__0.4U RNase I_20180828_JU

FASTQ file (CLIP)
fastqc
Directory
hnrnpc-hela-0-4u-rnase-i-20180828-ju_fastqc.zip
481.11 kB
hnrnpc-hela-0-4u-rnase-i-20180828-ju.fastq.gz
427.07 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
412.23 MB
STAR
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed.bam
834.04 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.55 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
2.45 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
146.33 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
iCount xlsites
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
135.53 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
59.05 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
5.39 kB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
30.40 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
29.23 MB
Paraclu
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
98.96 kB
PEKA
4mer analysis of hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
680.82 kB
iCount RNA-maps
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
2.04 MB
iCount summary
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
442 B
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.51 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.01 kB

MATR3_hnRNPC_4SUiCLIP_20180828_JU.fastq.gz

FASTQ file (single-end)
fastqc
Directory
MATR3_hnRNPC_4SUiCLIP_20180828_JU_fastqc.zip
552.72 kB
MATR3_hnRNPC_4SUiCLIP_20180828_JU.fastq.gz
17.36 GB
stderr.txt
1.30 kB

MATR3_Hela_GTX antibody_0.4U RNase I_20180828_JU

iCount RNA-maps
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.19 MB
Paraclu
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
13.96 kB
Cutadapt (single-end)
fastqc
Directory
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
204.47 MB
report.txt
686 B
STAR
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed.bam
444.72 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
90.01 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
1.47 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.47 MB
iCount xlsites
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
61.17 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
13.59 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
14.24 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
3.91 kB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
39.63 MB
iCount summary
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
439 B
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.23 MB
PEKA
4mer analysis of matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
552.16 kB
FASTQ file (CLIP)
fastqc
Directory
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_fastqc.zip
489.06 kB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju.fastq.gz
222.59 MB

HNRNPC_Hela_5min 6perc HD_0.4U RNase I_20180828_JU

FASTQ file (CLIP)
fastqc
Directory
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju.fastq.gz
479.20 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_fastqc.zip
508.01 kB
iCount RNA-maps
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.56 MB
PEKA
4mer analysis of hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
657.72 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
688 B
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
442.22 MB
STAR
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.56 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
201.78 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
2.40 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam
821.28 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
Paraclu
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
81.94 kB
iCount summary
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.35 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
442 B
iCount xlsites
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
50.30 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
20.61 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
5.36 kB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
94.58 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
22.12 MB

demux_nomatch.fastq.gz

FASTQ file (CLIP)
demux_nomatch.fastq.gz
10.59 GB
fastqc
Directory
demux_nomatch_fastqc.zip
554.42 kB

No Sample

Upload iCount sample annotation
MATR3_hnRNPC_4SUiCLIP_20180828_JU_annotation.tab.gz
891 B
MATR3_hnRNPC_4SUiCLIP_20180828_JU_annotation.xlsx
16.69 kB
FASTQ file (single-end)
fastqc
Directory
MATR3_hnRNPC_4SUiCLIP_20180828_JU_fastqc.zip
552.72 kB
MATR3_hnRNPC_4SUiCLIP_20180828_JU.fastq.gz
17.36 GB
stderr.txt
1.30 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
679 B
FASTQ file (CLIP)
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_fastqc.zip
521.45 kB
fastqc
Directory
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju.fastq.gz
208.84 MB
FASTQ file (CLIP)
fastqc
Directory
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju.fastq.gz
479.20 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_fastqc.zip
508.01 kB
iCount RNA-maps
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.56 MB
PEKA
4mer analysis of hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
657.72 kB
iCount RNA-maps
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.19 MB
Paraclu
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
13.96 kB
FASTQ file (CLIP)
fastqc
Directory
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju.fastq.gz
289.57 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_fastqc.zip
478.95 kB
FASTQ file (CLIP)
fastqc
Directory
hnrnpc-hela-0-4u-rnase-i-20180828-ju_fastqc.zip
481.11 kB
hnrnpc-hela-0-4u-rnase-i-20180828-ju.fastq.gz
427.07 MB
iCount RNA-maps
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.19 MB
Cutadapt (single-end)
fastqc
Directory
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
204.47 MB
report.txt
686 B
Cutadapt (single-end)
fastqc
Directory
report.txt
688 B
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
442.22 MB
Cutadapt (single-end)
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
277.21 MB
fastqc
Directory
report.txt
685 B
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
412.23 MB
Cutadapt (single-end)
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
227.31 MB
fastqc
Directory
report.txt
683 B
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
181.12 MB
STAR
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed.bam
444.72 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
90.01 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
1.47 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.47 MB
STAR
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.56 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
201.78 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
2.40 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam
821.28 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
STAR
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed.bam
834.04 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.55 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
2.45 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
146.33 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
STAR
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed.bam
527.51 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.46 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
111.31 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
1.33 MB
STAR
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
1.33 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam
486.25 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
84.43 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.34 MB
STAR
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam
414.15 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
74.68 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
843.48 kB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
3.20 MB
STAR
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed.bam.bai
2.71 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed_SJ.out.tab
1.44 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed_unmapped.out.mate1.fastq.gz
131.37 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed.bam
603.20 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed_stats.txt
1.81 kB
iCount xlsites
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
61.17 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
13.59 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
14.24 MB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
3.91 kB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
39.63 MB
iCount xlsites
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
17.66 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
4.44 kB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
18.64 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
81.32 MB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
41.09 MB
iCount xlsites
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
135.53 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
59.05 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
5.39 kB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
30.40 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
29.23 MB
Paraclu
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
98.96 kB
iCount summary
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
439 B
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.23 MB
Paraclu
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
81.94 kB
Paraclu
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
41.80 kB
Paraclu
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
42.69 kB
iCount RNA-maps
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.17 MB
iCount RNA-maps
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
903.49 kB
iCount RNA-maps
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
1.12 MB
Paraclu
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
31.87 kB
PEKA
4mer analysis of matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
585.41 kB
PEKA
4mer analysis of matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
529.50 kB
PEKA
4mer analysis of matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
586.49 kB
PEKA
4mer analysis of hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
680.82 kB
PEKA
4mer analysis of matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
574.60 kB
PEKA
4mer analysis of matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome.tar.gz
552.16 kB
iCount summary
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.16 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
440 B
Paraclu
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_peaks.bed.gz
19.95 kB
iCount RNA-maps
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.tar.gz
2.04 MB
iCount summary
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1018 B
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
1.93 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
439 B
iCount summary
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.25 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
439 B
iCount summary
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
442 B
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.51 MB
hnrnpc-hela-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
iCount xlsites
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
4.14 kB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
13.47 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
36.34 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
61.09 MB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
14.75 MB
iCount summary
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
440 B
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
matr3-hela-sc-antibody-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.23 MB
iCount summary
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_gene.tsv
2.35 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single_summary_type.tsv
442 B
iCount xlsites
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
8.88 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
40.07 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
23.23 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
9.48 MB
matr3-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
3.79 kB
iCount xlsites
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
18.14 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
17.42 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
79.98 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
43.39 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
4.77 kB
iCount xlsites
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_singleAndMulti.bed.gz
50.30 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bed.gz
20.61 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_skipped.bam
5.36 kB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_single.bedgraph
94.58 MB
hnrnpc-hela-5min-6perc-hd-0-4u-rnase-i-20180828-ju_mapped_to_genome_reads_single.bed.gz
22.12 MB
FASTQ file (CLIP)
demux_nomatch.fastq.gz
10.59 GB
fastqc
Directory
demux_nomatch_fastqc.zip
554.42 kB
Cutadapt (single-end)
fastqc
Directory
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_trimmed.fastq.gz
325.37 MB
report.txt
703 B
FASTQ file (CLIP)
fastqc
Directory
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju.fastq.gz
240.55 MB
matr3-hela-10perc-hd-0-4u-rnase-i-20180828-ju_fastqc.zip
474.06 kB
FASTQ file (CLIP)
fastqc
Directory
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju_fastqc.zip
488.56 kB
matr3-hela-5min-6perc-hd-10perc-hd-in-ip-0-4u-rnase-i-20180828-ju.fastq.gz
348.91 MB
FASTQ file (CLIP)
fastqc
Directory
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju_fastqc.zip
489.06 kB
matr3-hela-gtx-antibody-0-4u-rnase-i-20180828-ju.fastq.gz
222.59 MB