Sm_CLIP_LU99

No Sample

STAR

smb-clip-gsk-24hr-1_trimmed_SJ.out.tab

2.61 MB

smb-clip-gsk-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

58.68 MB

smb-clip-gsk-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-gsk-24hr-1_trimmed.bam

1.59 GB

smb-clip-gsk-24hr-1_trimmed.bam.bai

4.20 MB

STAR

smb-clip-lly-48hr-1_trimmed.bam.bai

4.17 MB

smb-clip-lly-48hr-1_trimmed_stats.txt

1.82 kB

smb-clip-lly-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

108.70 MB

smb-clip-lly-48hr-1_trimmed_SJ.out.tab

3.67 MB

smb-clip-lly-48hr-1_trimmed.bam

2.89 GB

STAR

smb-clip-lly-24hr-1_trimmed.bam

2.95 GB

smb-clip-lly-24hr-1_trimmed_stats.txt

1.82 kB

smb-clip-lly-24hr-1_trimmed.bam.bai

4.66 MB

smb-clip-lly-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

98.62 MB

smb-clip-lly-24hr-1_trimmed_SJ.out.tab

2.96 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-1_fastqc.zip

485.89 kB

smb-clip-dmso-48hr-1.fastq.gz

516.00 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-24hr-5-20201021-ju_trimmed.fastq.gz

117.68 MB

report.txt

668 B

STAR

smb-clip-gsk-24hr-3_trimmed_unmapped.out.mate1.fastq.gz

80.77 MB

smb-clip-gsk-24hr-3_trimmed.bam

3.73 GB

smb-clip-gsk-24hr-3_trimmed_SJ.out.tab

2.04 MB

smb-clip-gsk-24hr-3_trimmed.bam.bai

5.49 MB

smb-clip-gsk-24hr-3_trimmed_stats.txt

1.82 kB

STAR

smb-clip-gsk-24hr-2_trimmed.bam.bai

4.79 MB

smb-clip-gsk-24hr-2_trimmed_SJ.out.tab

2.07 MB

smb-clip-gsk-24hr-2_trimmed_stats.txt

1.82 kB

smb-clip-gsk-24hr-2_trimmed_unmapped.out.mate1.fastq.gz

70.23 MB

smb-clip-gsk-24hr-2_trimmed.bam

2.17 GB

STAR

smb-clip-lly-24hr-3_trimmed_SJ.out.tab

2.30 MB

smb-clip-lly-24hr-3_trimmed_unmapped.out.mate1.fastq.gz

87.04 MB

smb-clip-lly-24hr-3_trimmed.bam

2.84 GB

smb-clip-lly-24hr-3_trimmed_stats.txt

1.82 kB

smb-clip-lly-24hr-3_trimmed.bam.bai

5.16 MB

STAR

smb-clip-dmso-24hr-3_trimmed_unmapped.out.mate1.fastq.gz

52.45 MB

smb-clip-dmso-24hr-3_trimmed.bam

1.94 GB

smb-clip-dmso-24hr-3_trimmed.bam.bai

4.59 MB

smb-clip-dmso-24hr-3_trimmed_SJ.out.tab

1.49 MB

smb-clip-dmso-24hr-3_trimmed_stats.txt

1.81 kB

STAR

smb-clip-dmso-48hr-1-unc_trimmed_SJ.out.tab

1.51 MB

smb-clip-dmso-48hr-1-unc_trimmed.bam

1.67 GB

smb-clip-dmso-48hr-1-unc_trimmed.bam.bai

3.36 MB

smb-clip-dmso-48hr-1-unc_trimmed_unmapped.out.mate1.fastq.gz

29.92 MB

smb-clip-dmso-48hr-1-unc_trimmed_stats.txt

1.81 kB

STAR

smb-clip-dmso-48hr-2_trimmed_unmapped.out.mate1.fastq.gz

36.99 MB

smb-clip-dmso-48hr-2_trimmed.bam

1.01 GB

smb-clip-dmso-48hr-2_trimmed_stats.txt

1.81 kB

smb-clip-dmso-48hr-2_trimmed.bam.bai

4.17 MB

smb-clip-dmso-48hr-2_trimmed_SJ.out.tab

1.73 MB

STAR

smb-clip-gsk-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

72.14 MB

smb-clip-gsk-48hr-1_trimmed.bam.bai

4.53 MB

smb-clip-gsk-48hr-1_trimmed_SJ.out.tab

2.75 MB

smb-clip-gsk-48hr-1_trimmed_stats.txt

1.82 kB

smb-clip-gsk-48hr-1_trimmed.bam

2.19 GB

STAR

smb-clip-lly-48hr-2_trimmed.bam

1.09 GB

smb-clip-lly-48hr-2_trimmed_SJ.out.tab

2.01 MB

smb-clip-lly-48hr-2_trimmed.bam.bai

4.23 MB

smb-clip-lly-48hr-2_trimmed_unmapped.out.mate1.fastq.gz

41.76 MB

smb-clip-lly-48hr-2_trimmed_stats.txt

1.81 kB

STAR

smb-clip-gsk-48hr-2_trimmed_stats.txt

1.82 kB

smb-clip-gsk-48hr-2_trimmed.bam.bai

4.34 MB

smb-clip-gsk-48hr-2_trimmed.bam

2.66 GB

smb-clip-gsk-48hr-2_trimmed_unmapped.out.mate1.fastq.gz

103.20 MB

smb-clip-gsk-48hr-2_trimmed_SJ.out.tab

3.59 MB

STAR

smb-clip-dmso-48hr-1_trimmed_SJ.out.tab

3.24 MB

smb-clip-dmso-48hr-1_trimmed_stats.txt

1.82 kB

smb-clip-dmso-48hr-1_trimmed.bam

2.24 GB

smb-clip-dmso-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

88.72 MB

smb-clip-dmso-48hr-1_trimmed.bam.bai

4.15 MB

STAR

smb-clip-lly-24hr-2_trimmed.bam

1.69 GB

smb-clip-lly-24hr-2_trimmed_unmapped.out.mate1.fastq.gz

57.73 MB

smb-clip-lly-24hr-2_trimmed_stats.txt

1.81 kB

smb-clip-lly-24hr-2_trimmed.bam.bai

4.44 MB

smb-clip-lly-24hr-2_trimmed_SJ.out.tab

2.11 MB

iCount xlsites

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_skipped.bam

4.12 kB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_reads_single.bed.gz

10.58 MB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single.bed.gz

9.95 MB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

17.92 MB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single.bedgraph

45.60 MB

STAR

smb-clip-dmso-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

67.43 MB

smb-clip-dmso-24hr-1_trimmed.bam

2.14 GB

smb-clip-dmso-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-dmso-24hr-1_trimmed.bam.bai

4.49 MB

smb-clip-dmso-24hr-1_trimmed_SJ.out.tab

2.22 MB

STAR

smb-clip-dmso-24hr-2_trimmed_stats.txt

1.81 kB

smb-clip-dmso-24hr-2_trimmed.bam.bai

4.39 MB

smb-clip-dmso-24hr-2_trimmed_SJ.out.tab

2.37 MB

smb-clip-dmso-24hr-2_trimmed.bam

1.91 GB

smb-clip-dmso-24hr-2_trimmed_unmapped.out.mate1.fastq.gz

64.43 MB

iCount xlsites

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single.bedgraph

24.29 MB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_reads_single.bed.gz

5.75 MB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_skipped.bam

3.81 kB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

11.01 MB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single.bed.gz

5.42 MB

iCount xlsites

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single.bed.gz

3.38 MB

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_skipped.bam

3.15 kB

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_reads_single.bed.gz

3.58 MB

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

7.26 MB

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single.bedgraph

14.83 MB

iCount xlsites

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_reads_single.bed.gz

5.81 MB

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single.bed.gz

5.47 MB

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

10.98 MB

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single.bedgraph

24.47 MB

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_skipped.bam

3.14 kB

iCount xlsites

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single.bed.gz

9.71 MB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_reads_single.bed.gz

10.30 MB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single.bedgraph

44.35 MB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_skipped.bam

3.59 kB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

18.50 MB

iCount xlsites

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single.bedgraph

2.40 MB

smb-clip-dmso-48hr-2-unc_mapped_to_genome_reads_single.bed.gz

626.80 kB

smb-clip-dmso-48hr-2-unc_mapped_to_genome_skipped.bam

3.13 kB

smb-clip-dmso-48hr-2-unc_mapped_to_genome_singleAndMulti.bed.gz

1.20 MB

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single.bed.gz

584.65 kB

iCount xlsites

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single.bedgraph

68.25 MB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

28.28 MB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single.bed.gz

14.81 MB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_reads_single.bed.gz

15.63 MB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_skipped.bam

3.76 kB

iCount peaks

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_peaks.bedgraph

15.02 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_scores.tsv.gz

138.49 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_peaks.bed.gz

4.56 MB

iCount peaks

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_peaks.bed.gz

3.30 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_peaks.bedgraph

10.42 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_scores.tsv.gz

117.03 MB

PEKA

4mer analysis of smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome.tar.gz

580.31 kB

PEKA

4mer analysis of smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome.tar.gz

486.27 kB

PEKA

4mer analysis of smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome.tar.gz

447.09 kB

iCount xlsites

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

13.00 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single.bed.gz

9.15 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

9.62 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single.bedgraph

42.75 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.61 kB

FASTQ file (CLIP)

smb-clip-gsk-48hr-4-20201021-ju_fastqc.zip

525.81 kB

fastqc

Directory

smb-clip-gsk-48hr-4-20201021-ju.fastq.gz

224.00 MB

iCount group

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna.bed.gz

33.42 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_reads.bed.gz

35.30 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna.bedgraph

159.69 MB

iCount group

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna.bed.gz

38.85 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_reads.bed.gz

41.00 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna.bedgraph

185.93 MB

iCount group

SmB_GSK_48hrs_grouped_norep3_grouped_cdna.bed.gz

43.61 MB

SmB_GSK_48hrs_grouped_norep3_grouped_reads.bed.gz

46.06 MB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna.bedgraph

208.86 MB

Paraclu

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_peaks.bed.gz

478.72 kB

iCount summary

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_summary_type.tsv

447 B

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_summary_subtype.tsv

1.01 kB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_summary_gene.tsv

3.23 MB

iCount RNA-maps

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna.tar.gz

4.55 MB

iCount xlsites

smb-clip-lly-48hr-3_mapped_to_genome_single.bed.gz

6.05 MB

smb-clip-lly-48hr-3_mapped_to_genome_singleAndMulti.bed.gz

9.50 MB

smb-clip-lly-48hr-3_mapped_to_genome_skipped.bam

3.79 kB

smb-clip-lly-48hr-3_mapped_to_genome_reads_single.bed.gz

6.45 MB

smb-clip-lly-48hr-3_mapped_to_genome_single.bedgraph

27.69 MB

iCount xlsites

smb-clip-gsk-48hr-3_mapped_to_genome_skipped.bam

4.44 kB

smb-clip-gsk-48hr-3_mapped_to_genome_reads_single.bed.gz

11.41 MB

smb-clip-gsk-48hr-3_mapped_to_genome_single.bed.gz

10.71 MB

smb-clip-gsk-48hr-3_mapped_to_genome_single.bedgraph

50.31 MB

smb-clip-gsk-48hr-3_mapped_to_genome_singleAndMulti.bed.gz

14.87 MB

iCount xlsites

smb-clip-dmso-48hr-3_mapped_to_genome_skipped.bam

3.54 kB

smb-clip-dmso-48hr-3_mapped_to_genome_single.bed.gz

7.25 MB

smb-clip-dmso-48hr-3_mapped_to_genome_reads_single.bed.gz

7.70 MB

smb-clip-dmso-48hr-3_mapped_to_genome_singleAndMulti.bed.gz

11.30 MB

smb-clip-dmso-48hr-3_mapped_to_genome_single.bedgraph

33.41 MB

iCount summary

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_summary_type.tsv

448 B

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_summary_gene.tsv

3.33 MB

iCount xlsites

smb-clip-gsk-24hr-2_mapped_to_genome_singleAndMulti.bed.gz

13.94 MB

smb-clip-gsk-24hr-2_mapped_to_genome_skipped.bam

3.81 kB

smb-clip-gsk-24hr-2_mapped_to_genome_single.bedgraph

42.63 MB

smb-clip-gsk-24hr-2_mapped_to_genome_single.bed.gz

9.17 MB

smb-clip-gsk-24hr-2_mapped_to_genome_reads_single.bed.gz

9.74 MB

iCount xlsites

smb-clip-gsk-24hr-3_mapped_to_genome_reads_single.bed.gz

10.02 MB

smb-clip-gsk-24hr-3_mapped_to_genome_single.bedgraph

43.82 MB

smb-clip-gsk-24hr-3_mapped_to_genome_skipped.bam

4.48 kB

smb-clip-gsk-24hr-3_mapped_to_genome_singleAndMulti.bed.gz

15.06 MB

smb-clip-gsk-24hr-3_mapped_to_genome_single.bed.gz

9.46 MB

Paraclu

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_peaks.bed.gz

582.11 kB

iCount xlsites

smb-clip-dmso-24hr-3_mapped_to_genome_single.bedgraph

27.94 MB

smb-clip-dmso-24hr-3_mapped_to_genome_skipped.bam

3.42 kB

smb-clip-dmso-24hr-3_mapped_to_genome_single.bed.gz

6.08 MB

smb-clip-dmso-24hr-3_mapped_to_genome_reads_single.bed.gz

6.46 MB

smb-clip-dmso-24hr-3_mapped_to_genome_singleAndMulti.bed.gz

9.78 MB

iCount xlsites

smb-clip-lly-48hr-2_mapped_to_genome_singleAndMulti.bed.gz

13.49 MB

smb-clip-lly-48hr-2_mapped_to_genome_skipped.bam

3.77 kB

smb-clip-lly-48hr-2_mapped_to_genome_single.bed.gz

8.39 MB

smb-clip-lly-48hr-2_mapped_to_genome_reads_single.bed.gz

8.95 MB

smb-clip-lly-48hr-2_mapped_to_genome_single.bedgraph

39.13 MB

iCount RNA-maps

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna.tar.gz

4.85 MB

iCount xlsites

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single.bedgraph

10.86 MB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_skipped.bam

3.39 kB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_reads_single.bed.gz

2.56 MB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single.bed.gz

2.38 MB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_singleAndMulti.bed.gz

3.90 MB

iCount annotate

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_annotated.bed.gz

41.87 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_annotated.bedgraph

159.69 MB

iCount xlsites

smb-clip-lly-24hr-3_mapped_to_genome_single.bedgraph

59.32 MB

smb-clip-lly-24hr-3_mapped_to_genome_singleAndMulti.bed.gz

20.79 MB

smb-clip-lly-24hr-3_mapped_to_genome_single.bed.gz

12.76 MB

smb-clip-lly-24hr-3_mapped_to_genome_reads_single.bed.gz

13.48 MB

smb-clip-lly-24hr-3_mapped_to_genome_skipped.bam

4.93 kB

iCount xlsites

smb-clip-dmso-48hr-2_mapped_to_genome_reads_single.bed.gz

7.97 MB

smb-clip-dmso-48hr-2_mapped_to_genome_singleAndMulti.bed.gz

12.06 MB

smb-clip-dmso-48hr-2_mapped_to_genome_single.bed.gz

7.47 MB

smb-clip-dmso-48hr-2_mapped_to_genome_skipped.bam

3.96 kB

smb-clip-dmso-48hr-2_mapped_to_genome_single.bedgraph

34.67 MB

iCount xlsites

smb-clip-gsk-24hr-1_mapped_to_genome_single.bedgraph

64.89 MB

smb-clip-gsk-24hr-1_mapped_to_genome_reads_single.bed.gz

14.62 MB

smb-clip-gsk-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

21.37 MB

smb-clip-gsk-24hr-1_mapped_to_genome_skipped.bam

4.28 kB

smb-clip-gsk-24hr-1_mapped_to_genome_single.bed.gz

13.74 MB

iCount xlsites

smb-clip-gsk-48hr-1_mapped_to_genome_reads_single.bed.gz

15.08 MB

smb-clip-gsk-48hr-1_mapped_to_genome_single.bedgraph

66.67 MB

smb-clip-gsk-48hr-1_mapped_to_genome_skipped.bam

4.25 kB

smb-clip-gsk-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

22.15 MB

smb-clip-gsk-48hr-1_mapped_to_genome_single.bed.gz

14.16 MB

iCount xlsites

smb-clip-gsk-48hr-2_mapped_to_genome_skipped.bam

5.57 kB

smb-clip-gsk-48hr-2_mapped_to_genome_singleAndMulti.bed.gz

36.33 MB

smb-clip-gsk-48hr-2_mapped_to_genome_single.bed.gz

23.77 MB

smb-clip-gsk-48hr-2_mapped_to_genome_reads_single.bed.gz

25.28 MB

smb-clip-gsk-48hr-2_mapped_to_genome_single.bedgraph

113.22 MB

iCount xlsites

smb-clip-lly-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

41.00 MB

smb-clip-lly-48hr-1_mapped_to_genome_single.bedgraph

124.45 MB

smb-clip-lly-48hr-1_mapped_to_genome_single.bed.gz

26.10 MB

smb-clip-lly-48hr-1_mapped_to_genome_reads_single.bed.gz

27.64 MB

smb-clip-lly-48hr-1_mapped_to_genome_skipped.bam

4.50 kB

iCount annotate

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_annotated.bed.gz

48.35 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_annotated.bedgraph

185.93 MB

iCount xlsites

smb-clip-dmso-48hr-1_mapped_to_genome_skipped.bam

4.63 kB

smb-clip-dmso-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

31.39 MB

smb-clip-dmso-48hr-1_mapped_to_genome_single.bed.gz

20.05 MB

smb-clip-dmso-48hr-1_mapped_to_genome_single.bedgraph

95.14 MB

smb-clip-dmso-48hr-1_mapped_to_genome_reads_single.bed.gz

21.30 MB

iCount summary

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single_summary_gene.tsv

1.90 MB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single_summary_type.tsv

442 B

iCount xlsites

smb-clip-dmso-24hr-2_mapped_to_genome_skipped.bam

3.66 kB

smb-clip-dmso-24hr-2_mapped_to_genome_singleAndMulti.bed.gz

21.75 MB

smb-clip-dmso-24hr-2_mapped_to_genome_single.bedgraph

63.04 MB

smb-clip-dmso-24hr-2_mapped_to_genome_reads_single.bed.gz

14.35 MB

smb-clip-dmso-24hr-2_mapped_to_genome_single.bed.gz

13.48 MB

iCount summary

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1016 B

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single_summary_gene.tsv

1.70 MB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single_summary_type.tsv

436 B

Paraclu

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single_peaks.bed.gz

20.35 kB

iCount RNA-maps

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single.tar.gz

864.92 kB

iCount summary

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single_summary_gene.tsv

1.92 MB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1023 B

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single_summary_type.tsv

441 B

iCount xlsites

smb-clip-lly-24hr-1_mapped_to_genome_single.bed.gz

20.85 MB

smb-clip-lly-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

33.92 MB

smb-clip-lly-24hr-1_mapped_to_genome_reads_single.bed.gz

22.16 MB

smb-clip-lly-24hr-1_mapped_to_genome_single.bedgraph

98.02 MB

smb-clip-lly-24hr-1_mapped_to_genome_skipped.bam

4.76 kB

Paraclu

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single_peaks.bed.gz

42.20 kB

Paraclu

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_peaks.bed.gz

651.63 kB

iCount xlsites

smb-clip-dmso-24hr-1_mapped_to_genome_single.bedgraph

68.06 MB

smb-clip-dmso-24hr-1_mapped_to_genome_reads_single.bed.gz

15.53 MB

smb-clip-dmso-24hr-1_mapped_to_genome_skipped.bam

4.22 kB

smb-clip-dmso-24hr-1_mapped_to_genome_single.bed.gz

14.60 MB

smb-clip-dmso-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

23.99 MB

iCount summary

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_summary_type.tsv

449 B

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_summary_gene.tsv

3.38 MB

iCount RNA-maps

smb-clip-dmso-24hr-1_mapped_to_genome_single.tar.gz

2.48 MB

Paraclu

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single_peaks.bed.gz

2.84 kB

iCount summary

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single_summary_type.tsv

443 B

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single_summary_gene.tsv

2.10 MB

iCount RNA-maps

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single.tar.gz

1.76 MB

iCount RNA-maps

SmB_GSK_48hrs_grouped_norep3_grouped_cdna.tar.gz

5.07 MB

iCount annotate

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_annotated.bed.gz

54.00 MB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_annotated.bedgraph

208.86 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna.tar.gz

723.76 kB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna.tar.gz

749.45 kB

PEKA

4mer analysis of SmB_GSK_48hrs_grouped_norep3_grouped_cdna.tar.gz

759.26 kB

iCount peaks

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_peaks.bed.gz

3.36 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_scores.tsv.gz

24.60 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_peaks.bedgraph

15.41 MB

Paraclu

smb-clip-lly-48hr-3_mapped_to_genome_single_peaks.bed.gz

27.16 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-48hr-4-20201021-ju.fastq.gz

181.52 MB

smb-clip-lly-48hr-4-20201021-ju_fastqc.zip

516.10 kB

iCount summary

smb-clip-lly-48hr-3_mapped_to_genome_single_summary_subtype.tsv

1017 B

smb-clip-lly-48hr-3_mapped_to_genome_single_summary_gene.tsv

1.65 MB

smb-clip-lly-48hr-3_mapped_to_genome_single_summary_type.tsv

438 B

iCount summary

smb-clip-gsk-48hr-3_mapped_to_genome_single_summary_gene.tsv

1.77 MB

smb-clip-gsk-48hr-3_mapped_to_genome_single_summary_type.tsv

440 B

smb-clip-gsk-48hr-3_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

Paraclu

smb-clip-gsk-48hr-3_mapped_to_genome_single_peaks.bed.gz

102.49 kB

Paraclu

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single_peaks.bed.gz

20.32 kB

iCount summary

smb-clip-gsk-24hr-2_mapped_to_genome_single_summary_subtype.tsv

1020 B

smb-clip-gsk-24hr-2_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-gsk-24hr-2_mapped_to_genome_single_summary_gene.tsv

1.79 MB

iCount summary

smb-clip-dmso-24hr-3_mapped_to_genome_single_summary_subtype.tsv

1020 B

smb-clip-dmso-24hr-3_mapped_to_genome_single_summary_type.tsv

440 B

smb-clip-dmso-24hr-3_mapped_to_genome_single_summary_gene.tsv

1.66 MB

iCount summary

smb-clip-lly-48hr-2_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-lly-48hr-2_mapped_to_genome_single_summary_gene.tsv

1.75 MB

smb-clip-lly-48hr-2_mapped_to_genome_single_summary_subtype.tsv

1023 B

iCount summary

smb-clip-lly-24hr-3_mapped_to_genome_single_summary_subtype.tsv

1020 B

smb-clip-lly-24hr-3_mapped_to_genome_single_summary_gene.tsv

1.98 MB

smb-clip-lly-24hr-3_mapped_to_genome_single_summary_type.tsv

442 B

Paraclu

smb-clip-gsk-24hr-2_mapped_to_genome_single_peaks.bed.gz

63.89 kB

iCount summary

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single_summary_gene.tsv

1.32 MB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single_summary_subtype.tsv

1007 B

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single_summary_type.tsv

439 B

iCount RNA-maps

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single.tar.gz

1.44 MB

iCount summary

smb-clip-dmso-48hr-2_mapped_to_genome_single_summary_subtype.tsv

1016 B

smb-clip-dmso-48hr-2_mapped_to_genome_single_summary_gene.tsv

1.69 MB

smb-clip-dmso-48hr-2_mapped_to_genome_single_summary_type.tsv

439 B

Paraclu

smb-clip-dmso-48hr-2_mapped_to_genome_single_peaks.bed.gz

47.40 kB

iCount summary

smb-clip-gsk-48hr-1_mapped_to_genome_single_summary_gene.tsv

1.97 MB

smb-clip-gsk-48hr-1_mapped_to_genome_single_summary_type.tsv

442 B

smb-clip-gsk-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1023 B

Paraclu

smb-clip-gsk-48hr-1_mapped_to_genome_single_peaks.bed.gz

142.77 kB

PEKA

4mer analysis of smb-clip-gsk-48hr-1_mapped_to_genome.tar.gz

612.19 kB

iCount summary

smb-clip-gsk-24hr-1_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-gsk-24hr-1_mapped_to_genome_single_summary_gene.tsv

1.90 MB

smb-clip-gsk-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

Paraclu

smb-clip-gsk-24hr-1_mapped_to_genome_single_peaks.bed.gz

143.99 kB

PEKA

4mer analysis of smb-clip-gsk-24hr-1_mapped_to_genome.tar.gz

613.36 kB

iCount summary

smb-clip-gsk-48hr-2_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

smb-clip-gsk-48hr-2_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-gsk-48hr-2_mapped_to_genome_single_summary_gene.tsv

2.16 MB

iCount peaks

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_peaks.bed.gz

4.38 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_scores.tsv.gz

28.57 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_peaks.bedgraph

20.26 MB

Paraclu

smb-clip-gsk-48hr-2_mapped_to_genome_single_peaks.bed.gz

320.58 kB

PEKA

4mer analysis of smb-clip-gsk-48hr-2_mapped_to_genome.tar.gz

679.78 kB

iCount RNA-maps

smb-clip-gsk-24hr-1_mapped_to_genome_single.tar.gz

3.08 MB

iCount summary

smb-clip-lly-24hr-2_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-lly-24hr-2_mapped_to_genome_single_summary_subtype.tsv

1023 B

smb-clip-lly-24hr-2_mapped_to_genome_single_summary_gene.tsv

1.91 MB

Paraclu

smb-clip-lly-24hr-2_mapped_to_genome_single_peaks.bed.gz

77.21 kB

PEKA

4mer analysis of smb-clip-lly-24hr-2_mapped_to_genome.tar.gz

576.31 kB

iCount summary

smb-clip-lly-48hr-1_mapped_to_genome_single_summary_type.tsv

446 B

smb-clip-lly-48hr-1_mapped_to_genome_single_summary_gene.tsv

2.19 MB

smb-clip-lly-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

iCount RNA-maps

smb-clip-lly-24hr-2_mapped_to_genome_single.tar.gz

2.46 MB

Paraclu

smb-clip-lly-48hr-1_mapped_to_genome_single_peaks.bed.gz

372.25 kB

iCount RNA-maps

smb-clip-gsk-48hr-2_mapped_to_genome_single.tar.gz

3.93 MB

PEKA

4mer analysis of smb-clip-lly-48hr-1_mapped_to_genome.tar.gz

697.86 kB

iCount summary

smb-clip-dmso-48hr-1_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-dmso-48hr-1_mapped_to_genome_single_summary_gene.tsv

2.11 MB

smb-clip-dmso-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

smb-clip-dmso-48hr-1_mapped_to_genome_single_peaks.bed.gz

251.32 kB

iCount RNA-maps

smb-clip-dmso-24hr-2_mapped_to_genome_single.tar.gz

2.74 MB

PEKA

4mer analysis of smb-clip-mock-input-gsk-48hr-1_mapped_to_genome.tar.gz

554.77 kB

PEKA

4mer analysis of smb-clip-dmso-48hr-1_mapped_to_genome.tar.gz

651.56 kB

iCount summary

smb-clip-dmso-24hr-2_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-dmso-24hr-2_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-dmso-24hr-2_mapped_to_genome_single_summary_gene.tsv

1.96 MB

iCount peaks

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_peaks.bed.gz

4.88 MB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_scores.tsv.gz

31.95 MB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_peaks.bedgraph

22.58 MB

Paraclu

smb-clip-dmso-24hr-2_mapped_to_genome_single_peaks.bed.gz

105.81 kB

iCount summary

smb-clip-lly-24hr-1_mapped_to_genome_single_summary_gene.tsv

2.18 MB

smb-clip-lly-24hr-1_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-lly-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

smb-clip-lly-24hr-1_mapped_to_genome_single_peaks.bed.gz

165.87 kB

PEKA

4mer analysis of smb-clip-mock-input-lly-48hr-1_mapped_to_genome.tar.gz

455.76 kB

PEKA

4mer analysis of smb-clip-dmso-24hr-1_mapped_to_genome.tar.gz

618.83 kB

iCount summary

smb-clip-dmso-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-dmso-24hr-1_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-dmso-24hr-1_mapped_to_genome_single_summary_gene.tsv

2.00 MB

iCount xlsites

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

7.29 MB

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

10.43 MB

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single.bed.gz

6.94 MB

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single.bedgraph

32.08 MB

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.82 kB

iCount RNA-maps

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single.tar.gz

1.96 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-4-20201021-ju.fastq.gz

194.79 MB

smb-clip-dmso-48hr-4-20201021-ju_fastqc.zip

564.67 kB

STAR

smb-clip-gsk-48hr-4-20201021-ju_trimmed.bam

1.09 GB

smb-clip-gsk-48hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

35.21 MB

smb-clip-gsk-48hr-4-20201021-ju_trimmed_SJ.out.tab

1.91 MB

smb-clip-gsk-48hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-gsk-48hr-4-20201021-ju_trimmed.bam.bai

3.95 MB

FASTQ file (CLIP)

smb-clip-gsk-24hr-5-20201021-ju.fastq.gz

222.21 MB

smb-clip-gsk-24hr-5-20201021-ju_fastqc.zip

518.81 kB

fastqc

Directory

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-24hr-5-20201021-ju_fastqc.zip

540.24 kB

smb-clip-lly-24hr-5-20201021-ju.fastq.gz

112.59 MB

Paraclu

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single_peaks.bed.gz

14.14 kB

PEKA

4mer analysis of smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome.tar.gz

472.84 kB

PEKA

4mer analysis of smb-clip-lly-48hr-3_mapped_to_genome.tar.gz

513.50 kB

PEKA

4mer analysis of smb-clip-gsk-24hr-2_mapped_to_genome.tar.gz

555.82 kB

PEKA

4mer analysis of smb-clip-dmso-24hr-3_mapped_to_genome.tar.gz

506.31 kB

PEKA

4mer analysis of smb-clip-dmso-48hr-1-unc_mapped_to_genome.tar.gz

448.03 kB

PEKA

4mer analysis of smb-clip-lly-24hr-3_mapped_to_genome.tar.gz

597.50 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-24hr-5-20201021-ju.fastq.gz

114.05 MB

smb-clip-dmso-24hr-5-20201021-ju_fastqc.zip

532.69 kB

iCount group

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna.bed.gz

43.82 MB

SmB_CLIP_LLY_48hr_4group_2_grouped_reads.bed.gz

46.23 MB

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna.bedgraph

209.71 MB

iCount group

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna.bed.gz

39.52 MB

SmB_CLIP_DMSO_48hr_4group_2_grouped_reads.bed.gz

41.70 MB

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna.bedgraph

188.94 MB

FASTQ file (CLIP)

smb-clip-gsk-24hr-4-20201021-ju.fastq.gz

129.84 MB

fastqc

Directory

smb-clip-gsk-24hr-4-20201021-ju_fastqc.zip

556.99 kB

Upload iCount sample annotation

20200812_LG_collection_annotation.xlsx

227.63 kB

20200812_LG_collection_annotation.tab.gz

2.02 kB

iCount group

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna.bed.gz

52.19 MB

SmB_CLIP_GSK_48hr_4group_2_grouped_reads.bed.gz

55.07 MB

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna.bedgraph

250.44 MB

iCount RNA-maps

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna.tar.gz

5.03 MB

Paraclu

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_peaks.bed.gz

646.39 kB

iCount summary

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_summary_type.tsv

449 B

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_summary_gene.tsv

3.42 MB

iCount RNA-maps

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna.tar.gz

4.79 MB

iCount summary

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_summary_type.tsv

453 B

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_summary_gene.tsv

3.34 MB

Paraclu

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_peaks.bed.gz

560.74 kB

STAR

smb-clip-lly-48hr-4-20201021-ju_trimmed.bam

958.07 MB

smb-clip-lly-48hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

26.64 MB

smb-clip-lly-48hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-lly-48hr-4-20201021-ju_trimmed_SJ.out.tab

1.60 MB

smb-clip-lly-48hr-4-20201021-ju_trimmed.bam.bai

4.01 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-24hr-4-20201021-ju.fastq.gz

88.58 MB

smb-clip-lly-24hr-4-20201021-ju_fastqc.zip

567.62 kB

iCount annotate

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_annotated.bed.gz

54.20 MB

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_annotated.bedgraph

209.71 MB

iCount annotate

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_annotated.bed.gz

49.09 MB

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_annotated.bedgraph

188.94 MB

Paraclu

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_peaks.bed.gz

808.54 kB

iCount RNA-maps

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna.tar.gz

5.51 MB

PEKA

4mer analysis of SmB_CLIP_GSK_48hr_4group_2_grouped_cdna.tar.gz

764.67 kB

iCount summary

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_summary_type.tsv

452 B

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_summary_gene.tsv

3.49 MB

iCount annotate

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_annotated.bed.gz

64.17 MB

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_annotated.bedgraph

250.44 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna.tar.gz

731.72 kB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_4group_2_grouped_cdna.tar.gz

762.67 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-24hr-4-20201021-ju_fastqc.zip

592.01 kB

smb-clip-dmso-24hr-4-20201021-ju.fastq.gz

172.57 MB

Paraclu

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_peaks.bed.gz

340.34 kB

iCount RNA-maps

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna.tar.gz

3.85 MB

iCount RNA-maps

SmB_CLIP_LLY_24hr_grouped_grouped_cdna.tar.gz

4.19 MB

Paraclu

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_peaks.bed.gz

463.42 kB

iCount group

SmB_CLIP_LLY_24hr_grouped_grouped_cdna.bedgraph

202.30 MB

SmB_CLIP_LLY_24hr_grouped_grouped_cdna.bed.gz

42.57 MB

SmB_CLIP_LLY_24hr_grouped_grouped_reads.bed.gz

45.00 MB

iCount annotate

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_annotated.bedgraph

144.41 MB

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_annotated.bed.gz

38.07 MB

iCount RNA-maps

SmB_CLIP_GSK_24hr_grouped_grouped_cdna.tar.gz

4.07 MB

PEKA

4mer analysis of SmB_CLIP_GSK_24hr_grouped_grouped_cdna.tar.gz

697.18 kB

iCount summary

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_summary_gene.tsv

2.35 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_summary_type.tsv

445 B

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

iCount RNA-maps

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna.tar.gz

4.41 MB

iCount group

SmB_CLIP_DMSO_48hr_grouped_grouped_reads.bed.gz

34.65 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna.bedgraph

155.96 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna.bed.gz

32.72 MB

Paraclu

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_peaks.bed.gz

559.83 kB

iCount annotate

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_annotated.bed.gz

47.56 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_annotated.bedgraph

182.67 MB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_grouped_grouped_cdna.tar.gz

739.61 kB

iCount annotate

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_annotated.bedgraph

215.30 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_annotated.bed.gz

55.58 MB

iCount RNA-maps

SmB_CLIP_GSK_48hr_grouped_grouped_cdna.tar.gz

5.18 MB

iCount group

SmB_CLIP_DMSO_24hr_grouped_grouped_reads.bed.gz

34.08 MB

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna.bedgraph

152.36 MB

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna.bed.gz

32.15 MB

iCount group

SmB_CLIP_GSK_24hr_grouped_grouped_cdna.bed.gz

30.36 MB

SmB_CLIP_GSK_24hr_grouped_grouped_cdna.bedgraph

144.41 MB

SmB_CLIP_GSK_24hr_grouped_grouped_reads.bed.gz

32.11 MB

iCount group

SmB_CLIP_GSK_48hr_grouped_grouped_reads.bed.gz

47.54 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna.bedgraph

215.30 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna.bed.gz

44.92 MB

iCount summary

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_summary_gene.tsv

2.37 MB

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_summary_type.tsv

452 B

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_summary_subtype.tsv

1.02 kB

iCount summary

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_summary_gene.tsv

2.52 MB

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_summary_type.tsv

450 B

iCount group

SmB_CLIP_LLY_48hr_grouped_grouped_cdna.bedgraph

182.67 MB

SmB_CLIP_LLY_48hr_grouped_grouped_reads.bed.gz

40.40 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna.bed.gz

38.21 MB

iCount annotate

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_annotated.bed.gz

40.00 MB

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_annotated.bedgraph

152.36 MB

iCount summary

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_summary_type.tsv

443 B

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_summary_gene.tsv

2.29 MB

iCount annotate

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_annotated.bedgraph

202.30 MB

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_annotated.bed.gz

52.24 MB

Paraclu

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_peaks.bed.gz

374.55 kB

Paraclu

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_peaks.bed.gz

443.36 kB

iCount summary

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_summary_type.tsv

448 B

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_summary_gene.tsv

2.39 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_summary_subtype.tsv

1.02 kB

iCount annotate

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_annotated.bedgraph

155.96 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_annotated.bed.gz

40.99 MB

iCount RNA-maps

SmB_CLIP_LLY_48hr_grouped_grouped_cdna.tar.gz

4.77 MB

iCount summary

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_summary_gene.tsv

2.44 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_summary_type.tsv

448 B

Paraclu

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_peaks.bed.gz

687.91 kB

PEKA

4mer analysis of SmB_CLIP_DMSO_24hr_grouped_grouped_cdna.tar.gz

704.07 kB

PEKA

4mer analysis of SmB_CLIP_LLY_24hr_grouped_grouped_cdna.tar.gz

747.18 kB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hr_grouped_grouped_cdna.tar.gz

732.08 kB

PEKA

4mer analysis of SmB_CLIP_GSK_48hr_grouped_grouped_cdna.tar.gz

758.11 kB

FASTQ file (single-end)

fastqc

Directory

GRI1109A2-A35_S7_L002_R1_001_fastqc.zip

502.20 kB

GRI1109A2-A35_S7_L002_R1_001.fastq.gz

16.77 GB

stderr.txt

1.21 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

2.18 kB

STAR

smb-clip-dmso-48hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-dmso-48hr-4-20201021-ju_trimmed.bam

1.04 GB

smb-clip-dmso-48hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

31.03 MB

smb-clip-dmso-48hr-4-20201021-ju_trimmed_SJ.out.tab

1.59 MB

smb-clip-dmso-48hr-4-20201021-ju_trimmed.bam.bai

4.03 MB

STAR

smb-clip-gsk-24hr-5-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

34.54 MB

smb-clip-gsk-24hr-5-20201021-ju_trimmed.bam

1.08 GB

smb-clip-gsk-24hr-5-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-gsk-24hr-5-20201021-ju_trimmed_SJ.out.tab

1.91 MB

smb-clip-gsk-24hr-5-20201021-ju_trimmed.bam.bai

4.07 MB

Upload iCount sample annotation

sm_clip_plus_rupert_collection_annotation.xlsx

229.89 kB

sm_clip_plus_rupert_collection_annotation.tab.gz

1.51 kB

FASTQ file (single-end)

fastqc

Directory

GRI957A35-A68_S346_L008_R1_001.fastq.gz

17.29 GB

stderr.txt

1.25 kB

GRI957A35-A68_S346_L008_R1_001_fastqc.zip

502.54 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

1.79 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-gsk-24hr-1.fastq.gz

356.59 MB

smb-clip-gsk-24hr-1_fastqc.zip

492.67 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-gsk-48hr-1.fastq.gz

453.19 MB

smb-clip-gsk-48hr-1_fastqc.zip

488.80 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-24hr-3_fastqc.zip

518.39 kB

smb-clip-dmso-24hr-3.fastq.gz

311.13 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-1-unc.fastq.gz

253.88 MB

smb-clip-dmso-48hr-1-unc_fastqc.zip

544.28 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-dmso-48hr-1.fastq.gz

146.02 MB

smb-clip-mock-input-dmso-48hr-1_fastqc.zip

480.83 kB

FASTQ file (CLIP)

fastqc

Directory

demux_nomatch_fastqc.zip

435.30 kB

demux_nomatch.fastq.gz

1.77 GB

FASTQ file (CLIP)

smb-clip-dmso-24hr-2.fastq.gz

400.84 MB

smb-clip-dmso-24hr-2_fastqc.zip

485.61 kB

fastqc

Directory

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-2.fastq.gz

208.58 MB

smb-clip-dmso-48hr-2_fastqc.zip

499.02 kB

FASTQ file (CLIP)

smb-clip-lly-48hr-1_fastqc.zip

502.84 kB

fastqc

Directory

smb-clip-lly-48hr-1.fastq.gz

643.31 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-24hr-3.fastq.gz

522.49 MB

smb-clip-lly-24hr-3_fastqc.zip

511.68 kB

FASTQ file (CLIP)

smb-clip-gsk-24hr-3_fastqc.zip

538.08 kB

fastqc

Directory

smb-clip-gsk-24hr-3.fastq.gz

573.16 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-3.fastq.gz

411.03 MB

smb-clip-dmso-48hr-3_fastqc.zip

513.88 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-48hr-3.fastq.gz

279.70 MB

smb-clip-lly-48hr-3_fastqc.zip

492.77 kB

FASTQ file (CLIP)

smb-clip-dmso-48hr-2-unc_fastqc.zip

574.80 kB

fastqc

Directory

smb-clip-dmso-48hr-2-unc.fastq.gz

73.57 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-gsk-48hr-2.fastq.gz

614.72 MB

smb-clip-gsk-48hr-2_fastqc.zip

484.96 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-24hr-1.fastq.gz

631.07 MB

smb-clip-lly-24hr-1_fastqc.zip

470.78 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-24hr-1.fastq.gz

450.04 MB

smb-clip-dmso-24hr-1_fastqc.zip

483.97 kB

FASTQ file (CLIP)

smb-clip-mock-input-gsk-24hr-1_fastqc.zip

492.77 kB

fastqc

Directory

smb-clip-mock-input-gsk-24hr-1.fastq.gz

170.86 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-24hr-1.fastq.gz

247.41 MB

smb-clip-mock-input-lly-24hr-1_fastqc.zip

478.70 kB

FASTQ file (CLIP)

smb-clip-mock-input-dmso-24hr-1.fastq.gz

308.03 MB

fastqc

Directory

smb-clip-mock-input-dmso-24hr-1_fastqc.zip

468.79 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-gsk-48hr-1.fastq.gz

250.77 MB

smb-clip-mock-input-gsk-48hr-1_fastqc.zip

481.66 kB

iCount RNA-maps

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single.tar.gz

1.45 MB

Paraclu

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single_peaks.bed.gz

40.15 kB

iCount RNA-maps

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single.tar.gz

1.04 MB

PEKA

4mer analysis of smb-clip-mock-input-gsk-24hr-1_mapped_to_genome.tar.gz

503.24 kB

FASTQ file (CLIP)

smb-clip-mock-input-gsk-24hr-3-20200812-lg.fastq.gz

422.34 MB

fastqc

Directory

smb-clip-mock-input-gsk-24hr-3-20200812-lg_fastqc.zip

435.83 kB

FASTQ file (CLIP)

smb-clip-mock-input-lly-48hr-1.fastq.gz

171.31 MB

smb-clip-mock-input-lly-48hr-1_fastqc.zip

494.38 kB

fastqc

Directory

iCount summary

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single_summary_type.tsv

430 B

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1010 B

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single_summary_gene.tsv

1.55 MB

Paraclu

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single_peaks.bed.gz

14.09 kB

iCount annotate

DMSO_48hr_mock_inputs_grouped_grouped_cdna_annotated.bedgraph

68.41 MB

DMSO_48hr_mock_inputs_grouped_grouped_cdna_annotated.bed.gz

18.67 MB

iCount RNA-maps

DMSO_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

1.71 MB

PEKA

4mer analysis of DMSO_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

638.72 kB

iCount RNA-maps

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single.tar.gz

1.38 MB

iCount group

DMSO_48hr_mock_inputs_grouped_grouped_reads.bed.gz

15.93 MB

DMSO_48hr_mock_inputs_grouped_grouped_cdna.bedgraph

68.41 MB

DMSO_48hr_mock_inputs_grouped_grouped_cdna.bed.gz

14.75 MB

PEKA

4mer analysis of smb-clip-mock-input-lly-24hr-1_mapped_to_genome.tar.gz

562.90 kB

iCount summary

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1012 B

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single_summary_type.tsv

436 B

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single_summary_gene.tsv

1.68 MB

iCount RNA-maps

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single.tar.gz

1.01 MB

Paraclu

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single_peaks.bed.gz

20.95 kB

PEKA

4mer analysis of smb-clip-mock-input-dmso-48hr-1_mapped_to_genome.tar.gz

525.61 kB

iCount summary

DMSO_48hr_mock_inputs_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

DMSO_48hr_mock_inputs_grouped_grouped_cdna_summary_type.tsv

443 B

DMSO_48hr_mock_inputs_grouped_grouped_cdna_summary_gene.tsv

2.86 MB

Paraclu

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single_peaks.bed.gz

80.13 kB

Paraclu

DMSO_48hr_mock_inputs_grouped_grouped_cdna_peaks.bed.gz

83.69 kB

PEKA

4mer analysis of smb-clip-mock-input-dmso-24hr-1_mapped_to_genome.tar.gz

625.25 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-gsk-48hr-2-20200812-lg.fastq.gz

337.18 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_fastqc.zip

445.11 kB

iCount summary

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single_summary_type.tsv

427 B

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single_summary_subtype.tsv

987 B

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single_summary_gene.tsv

949.02 kB

iCount RNA-maps

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single.tar.gz

659.68 kB

PEKA

4mer analysis of smb-clip-dmso-48hr-2-unc_mapped_to_genome.tar.gz

263.32 kB

PEKA

4mer analysis of GSK_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

671.91 kB

FASTQ file (CLIP)

smb-clip-gsk-48hr-3_fastqc.zip

515.31 kB

fastqc

Directory

smb-clip-gsk-48hr-3.fastq.gz

382.97 MB

iCount group

GSK_48hr_mock_inputs_grouped_grouped_cdna.bedgraph

108.01 MB

GSK_48hr_mock_inputs_grouped_grouped_reads.bed.gz

24.78 MB

GSK_48hr_mock_inputs_grouped_grouped_cdna.bed.gz

23.07 MB

iCount RNA-maps

smb-clip-gsk-48hr-3_mapped_to_genome_single.tar.gz

2.67 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-dmso-24hr-2-20200812-lg.fastq.gz

179.65 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_fastqc.zip

448.34 kB

PEKA

4mer analysis of smb-clip-gsk-48hr-3_mapped_to_genome.tar.gz

578.84 kB

FASTQ file (CLIP)

smb-clip-mock-input-dmso-24hr-3-20200812-lg.fastq.gz

186.46 MB

fastqc

Directory

smb-clip-mock-input-dmso-24hr-3-20200812-lg_fastqc.zip

452.09 kB

iCount RNA-maps

smb-clip-lly-48hr-3_mapped_to_genome_single.tar.gz

1.65 MB

Paraclu

GSK_48hr_mock_inputs_grouped_grouped_cdna_peaks.bed.gz

146.23 kB

iCount summary

smb-clip-dmso-48hr-3_mapped_to_genome_single_summary_gene.tsv

1.72 MB

smb-clip-dmso-48hr-3_mapped_to_genome_single_summary_type.tsv

442 B

smb-clip-dmso-48hr-3_mapped_to_genome_single_summary_subtype.tsv

1022 B

iCount RNA-maps

smb-clip-dmso-48hr-3_mapped_to_genome_single.tar.gz

1.83 MB

iCount summary

GSK_48hr_mock_inputs_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

GSK_48hr_mock_inputs_grouped_grouped_cdna_summary_gene.tsv

3.13 MB

GSK_48hr_mock_inputs_grouped_grouped_cdna_summary_type.tsv

445 B

Paraclu

smb-clip-dmso-48hr-3_mapped_to_genome_single_peaks.bed.gz

36.65 kB

iCount RNA-maps

GSK_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

2.25 MB

PEKA

4mer analysis of smb-clip-dmso-48hr-3_mapped_to_genome.tar.gz

529.79 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-gsk-48hr-3-20200812-lg_fastqc.zip

448.77 kB

smb-clip-mock-input-gsk-48hr-3-20200812-lg.fastq.gz

211.36 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-48hr-3-20200812-lg.fastq.gz

358.60 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_fastqc.zip

446.42 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-gsk-24hr-3_trimmed.fastq.gz

602.40 MB

report.txt

655 B

iCount annotate

GSK_48hr_mock_inputs_grouped_grouped_cdna_annotated.bedgraph

108.01 MB

GSK_48hr_mock_inputs_grouped_grouped_cdna_annotated.bed.gz

28.72 MB

iCount summary

smb-clip-gsk-24hr-3_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-gsk-24hr-3_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-gsk-24hr-3_mapped_to_genome_single_summary_gene.tsv

1.82 MB

Paraclu

smb-clip-gsk-24hr-3_mapped_to_genome_single_peaks.bed.gz

51.62 kB

iCount RNA-maps

smb-clip-gsk-24hr-3_mapped_to_genome_single.tar.gz

2.05 MB

PEKA

4mer analysis of smb-clip-gsk-24hr-3_mapped_to_genome.tar.gz

565.82 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-gsk-24hr-2.fastq.gz

396.26 MB

smb-clip-gsk-24hr-2_fastqc.zip

496.33 kB

iCount RNA-maps

LLY_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

2.29 MB

iCount RNA-maps

smb-clip-gsk-24hr-2_mapped_to_genome_single.tar.gz

2.27 MB

iCount peaks

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_peaks.bed.gz

3.95 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_scores.tsv.gz

28.95 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_peaks.bedgraph

18.14 MB

Paraclu

smb-clip-lly-24hr-3_mapped_to_genome_single_peaks.bed.gz

74.70 kB

iCount RNA-maps

smb-clip-lly-24hr-3_mapped_to_genome_single.tar.gz

2.21 MB

iCount summary

LLY_48hr_mock_inputs_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

LLY_48hr_mock_inputs_grouped_grouped_cdna_summary_gene.tsv

3.18 MB

LLY_48hr_mock_inputs_grouped_grouped_cdna_summary_type.tsv

442 B

iCount annotate

LLY_48hr_mock_inputs_grouped_grouped_cdna_annotated.bedgraph

112.51 MB

LLY_48hr_mock_inputs_grouped_grouped_cdna_annotated.bed.gz

29.86 MB

iCount group

LLY_48hr_mock_inputs_grouped_grouped_cdna.bedgraph

112.51 MB

LLY_48hr_mock_inputs_grouped_grouped_reads.bed.gz

25.80 MB

LLY_48hr_mock_inputs_grouped_grouped_cdna.bed.gz

24.03 MB

iCount RNA-maps

smb-clip-dmso-24hr-3_mapped_to_genome_single.tar.gz

1.80 MB

Paraclu

smb-clip-dmso-24hr-3_mapped_to_genome_single_peaks.bed.gz

29.38 kB

Paraclu

LLY_48hr_mock_inputs_grouped_grouped_cdna_peaks.bed.gz

158.66 kB

PEKA

4mer analysis of LLY_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

679.57 kB

iCount RNA-maps

smb-clip-gsk-48hr-1_mapped_to_genome_single.tar.gz

2.99 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-48hr-2.fastq.gz

241.12 MB

smb-clip-lly-48hr-2_fastqc.zip

488.60 kB

Paraclu

smb-clip-lly-48hr-2_mapped_to_genome_single_peaks.bed.gz

66.12 kB

iCount RNA-maps

smb-clip-lly-48hr-2_mapped_to_genome_single.tar.gz

2.40 MB

PEKA

4mer analysis of smb-clip-lly-48hr-2_mapped_to_genome.tar.gz

554.65 kB

iCount RNA-maps

smb-clip-lly-48hr-1_mapped_to_genome_single.tar.gz

4.12 MB

iCount RNA-maps

smb-clip-dmso-48hr-2_mapped_to_genome_single.tar.gz

2.25 MB

PEKA

4mer analysis of smb-clip-dmso-48hr-2_mapped_to_genome.tar.gz

540.98 kB

iCount RNA-maps

smb-clip-dmso-48hr-1_mapped_to_genome_single.tar.gz

3.68 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

666 B

smb-clip-mock-input-gsk-48hr-1_trimmed.fastq.gz

244.77 MB

FASTQ file (CLIP)

smb-clip-lly-24hr-2.fastq.gz

360.04 MB

fastqc

Directory

smb-clip-lly-24hr-2_fastqc.zip

475.89 kB

iCount xlsites

smb-clip-lly-24hr-2_mapped_to_genome_single.bedgraph

55.50 MB

smb-clip-lly-24hr-2_mapped_to_genome_singleAndMulti.bed.gz

19.67 MB

smb-clip-lly-24hr-2_mapped_to_genome_single.bed.gz

11.91 MB

smb-clip-lly-24hr-2_mapped_to_genome_reads_single.bed.gz

12.69 MB

smb-clip-lly-24hr-2_mapped_to_genome_skipped.bam

4.29 kB

iCount RNA-maps

smb-clip-lly-24hr-1_mapped_to_genome_single.tar.gz

3.05 MB

PEKA

4mer analysis of smb-clip-lly-24hr-1_mapped_to_genome.tar.gz

658.62 kB

PEKA

4mer analysis of smb-clip-dmso-24hr-2_mapped_to_genome.tar.gz

609.72 kB

iCount peaks

SmB_CLIP_GSK_48hr_4group_grouped_cdna_peaks.bed.gz

6.42 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna_scores.tsv.gz

38.16 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna_peaks.bedgraph

29.91 MB

Paraclu

smb-clip-dmso-24hr-1_mapped_to_genome_single_peaks.bed.gz

87.39 kB

Cutadapt (single-end)

smb-clip-mock-input-gsk-24hr-1_trimmed.fastq.gz

164.53 MB

fastqc

Directory

report.txt

666 B

Cutadapt (single-end)

fastqc

Directory

report.txt

667 B

smb-clip-mock-input-dmso-24hr-1_trimmed.fastq.gz

303.50 MB

iCount peaks

SmB_CLIP_LLY_48hr_4group_grouped_cdna_peaks.bed.gz

4.90 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna_scores.tsv.gz

32.10 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna_peaks.bedgraph

22.67 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-lly-48hr-1_trimmed.fastq.gz

165.41 MB

report.txt

667 B

Cutadapt (single-end)

smb-clip-mock-input-dmso-48hr-1_trimmed.fastq.gz

138.47 MB

fastqc

Directory

report.txt

668 B

Cutadapt (single-end)

fastqc

Directory

report.txt

659 B

smb-clip-dmso-48hr-2-unc_trimmed.fastq.gz

77.62 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-lly-24hr-1_trimmed.fastq.gz

242.54 MB

report.txt

666 B

Cutadapt (single-end)

fastqc

Directory

report.txt

655 B

smb-clip-gsk-48hr-3_trimmed.fastq.gz

399.68 MB

Cutadapt (single-end)

report.txt

655 B

fastqc

Directory

smb-clip-lly-48hr-3_trimmed.fastq.gz

291.67 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

656 B

smb-clip-dmso-48hr-3_trimmed.fastq.gz

431.14 MB

Cutadapt (single-end)

report.txt

655 B

fastqc

Directory

smb-clip-lly-24hr-3_trimmed.fastq.gz

545.73 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-24hr-3_trimmed.fastq.gz

325.52 MB

report.txt

656 B

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-48hr-1-unc_trimmed.fastq.gz

266.90 MB

report.txt

660 B

Cutadapt (single-end)

fastqc

Directory

smb-clip-gsk-24hr-2_trimmed.fastq.gz

413.13 MB

report.txt

655 B

Cutadapt (single-end)

fastqc

Directory

report.txt

655 B

smb-clip-gsk-48hr-1_trimmed.fastq.gz

469.47 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-lly-48hr-2_trimmed.fastq.gz

248.87 MB

report.txt

655 B

Cutadapt (single-end)

smb-clip-gsk-48hr-2_trimmed.fastq.gz

636.22 MB

fastqc

Directory

report.txt

655 B

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-48hr-2_trimmed.fastq.gz

215.68 MB

report.txt

656 B

Cutadapt (single-end)

fastqc

Directory

report.txt

655 B

smb-clip-lly-48hr-1_trimmed.fastq.gz

665.25 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

656 B

smb-clip-dmso-48hr-1_trimmed.fastq.gz

532.62 MB

Cutadapt (single-end)

smb-clip-gsk-24hr-1_trimmed.fastq.gz

368.17 MB

fastqc

Directory

report.txt

655 B

Cutadapt (single-end)

smb-clip-lly-24hr-2_trimmed.fastq.gz

372.05 MB

report.txt

655 B

fastqc

Directory

iCount group

SmB_CLIP_GSK_48hr_3group_noGSK3_grouped_cdna.bed.gz

43.61 MB

SmB_CLIP_GSK_48hr_3group_noGSK3_grouped_reads.bed.gz

46.06 MB

SmB_CLIP_GSK_48hr_3group_noGSK3_grouped_cdna.bedgraph

208.86 MB

STAR

smb-clip-mock-input-gsk-48hr-1_trimmed.bam

557.07 MB

smb-clip-mock-input-gsk-48hr-1_trimmed_SJ.out.tab

1.01 MB

smb-clip-mock-input-gsk-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

108.22 MB

smb-clip-mock-input-gsk-48hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-48hr-1_trimmed.bam.bai

3.75 MB

Cutadapt (single-end)

report.txt

655 B

fastqc

Directory

smb-clip-lly-24hr-1_trimmed.fastq.gz

653.39 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

656 B

smb-clip-dmso-24hr-2_trimmed.fastq.gz

414.27 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

656 B

smb-clip-dmso-24hr-1_trimmed.fastq.gz

463.29 MB

STAR

smb-clip-lly-24hr-5-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

16.82 MB

smb-clip-lly-24hr-5-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-lly-24hr-5-20201021-ju_trimmed_SJ.out.tab

930.35 kB

smb-clip-lly-24hr-5-20201021-ju_trimmed.bam.bai

4.07 MB

smb-clip-lly-24hr-5-20201021-ju_trimmed.bam

617.68 MB

STAR

smb-clip-mock-input-gsk-24hr-1_trimmed.bam

402.47 MB

smb-clip-mock-input-gsk-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

83.34 MB

smb-clip-mock-input-gsk-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-24hr-1_trimmed.bam.bai

4.02 MB

smb-clip-mock-input-gsk-24hr-1_trimmed_SJ.out.tab

643.30 kB

STAR

smb-clip-mock-input-lly-48hr-1_trimmed.bam.bai

4.10 MB

smb-clip-mock-input-lly-48hr-1_trimmed_SJ.out.tab

440.92 kB

smb-clip-mock-input-lly-48hr-1_trimmed.bam

350.81 MB

smb-clip-mock-input-lly-48hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

110.45 MB

STAR

smb-clip-mock-input-lly-24hr-1_trimmed_SJ.out.tab

1012.36 kB

smb-clip-mock-input-lly-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

112.92 MB

smb-clip-mock-input-lly-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-24hr-1_trimmed.bam

573.08 MB

smb-clip-mock-input-lly-24hr-1_trimmed.bam.bai

3.64 MB

STAR

smb-clip-dmso-48hr-2-unc_trimmed_stats.txt

1.80 kB

smb-clip-dmso-48hr-2-unc_trimmed.bam.bai

2.54 MB

smb-clip-dmso-48hr-2-unc_trimmed.bam

564.96 MB

smb-clip-dmso-48hr-2-unc_trimmed_SJ.out.tab

409.25 kB

smb-clip-dmso-48hr-2-unc_trimmed_unmapped.out.mate1.fastq.gz

8.42 MB

STAR

smb-clip-mock-input-dmso-48hr-1_trimmed.bam

333.35 MB

smb-clip-mock-input-dmso-48hr-1_trimmed.bam.bai

4.07 MB

smb-clip-mock-input-dmso-48hr-1_trimmed_SJ.out.tab

599.77 kB

smb-clip-mock-input-dmso-48hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

61.04 MB

STAR

smb-clip-mock-input-dmso-24hr-1_trimmed.bam

782.22 MB

smb-clip-mock-input-dmso-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-24hr-1_trimmed.bam.bai

3.31 MB

smb-clip-mock-input-dmso-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

113.13 MB

smb-clip-mock-input-dmso-24hr-1_trimmed_SJ.out.tab

1.45 MB

STAR

smb-clip-lly-48hr-3_trimmed.bam

1.58 GB

smb-clip-lly-48hr-3_trimmed.bam.bai

4.48 MB

smb-clip-lly-48hr-3_trimmed_SJ.out.tab

1.47 MB

smb-clip-lly-48hr-3_trimmed_stats.txt

1.81 kB

smb-clip-lly-48hr-3_trimmed_unmapped.out.mate1.fastq.gz

43.90 MB

STAR

smb-clip-dmso-48hr-3_trimmed.bam.bai

4.91 MB

smb-clip-dmso-48hr-3_trimmed_unmapped.out.mate1.fastq.gz

60.81 MB

smb-clip-dmso-48hr-3_trimmed_SJ.out.tab

1.69 MB

smb-clip-dmso-48hr-3_trimmed_stats.txt

1.81 kB

smb-clip-dmso-48hr-3_trimmed.bam

2.56 GB

STAR

smb-clip-gsk-48hr-3_trimmed_unmapped.out.mate1.fastq.gz

67.18 MB

smb-clip-gsk-48hr-3_trimmed_SJ.out.tab

2.21 MB

smb-clip-gsk-48hr-3_trimmed_stats.txt

1.82 kB

smb-clip-gsk-48hr-3_trimmed.bam.bai

4.38 MB

smb-clip-gsk-48hr-3_trimmed.bam

2.10 GB

iCount RNA-maps

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.06 MB

Paraclu

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

32.39 kB

PEKA

4mer analysis of smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome.tar.gz

551.30 kB

STAR

smb-clip-dmso-24hr-5-20201021-ju_trimmed.bam.bai

4.16 MB

smb-clip-dmso-24hr-5-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

17.46 MB

smb-clip-dmso-24hr-5-20201021-ju_trimmed_SJ.out.tab

875.24 kB

smb-clip-dmso-24hr-5-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-dmso-24hr-5-20201021-ju_trimmed.bam

606.28 MB

Cutadapt (single-end)

report.txt

678 B

fastqc

Directory

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed.fastq.gz

366.71 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-48hr-2-20200812-lg_fastqc.zip

436.75 kB

smb-clip-mock-input-lly-48hr-2-20200812-lg.fastq.gz

396.11 MB

PEKA

4mer analysis of smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome.tar.gz

570.43 kB

FASTQ file (CLIP)

smb-clip-mock-input-dmso-48hr-3-20200812-lg.fastq.gz

201.98 MB

fastqc

Directory

smb-clip-mock-input-dmso-48hr-3-20200812-lg_fastqc.zip

446.53 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-dmso-48hr-2-20200812-lg_fastqc.zip

460.29 kB

smb-clip-mock-input-dmso-48hr-2-20200812-lg.fastq.gz

220.47 MB

iCount summary

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.56 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1013 B

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

438 B

Paraclu

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

17.86 kB

iCount RNA-maps

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.04 MB

PEKA

4mer analysis of smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome.tar.gz

504.95 kB

iCount RNA-maps

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.70 MB

PEKA

4mer analysis of smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome.tar.gz

604.59 kB

FASTQ file (CLIP)

smb-clip-mock-input-gsk-24hr-2-20200812-lg_fastqc.zip

436.28 kB

fastqc

Directory

smb-clip-mock-input-gsk-24hr-2-20200812-lg.fastq.gz

527.71 MB

iCount RNA-maps

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.88 MB

PEKA

4mer analysis of smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome.tar.gz

627.12 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-24hr-3-20200812-lg_fastqc.zip

443.55 kB

smb-clip-mock-input-lly-24hr-3-20200812-lg.fastq.gz

307.36 MB

Paraclu

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

40.62 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-24hr-2-20200812-lg.fastq.gz

265.82 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_fastqc.zip

452.74 kB

iCount RNA-maps

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.34 MB

Paraclu

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

35.98 kB

PEKA

4mer analysis of smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome.tar.gz

506.62 kB

Paraclu

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

16.99 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed.fastq.gz

406.86 MB

report.txt

678 B

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed.fastq.gz

217.47 MB

report.txt

678 B

Cutadapt (single-end)

report.txt

678 B

fastqc

Directory

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed.fastq.gz

347.42 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

679 B

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed.fastq.gz

226.12 MB

Cutadapt (single-end)

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed.fastq.gz

208.76 MB

fastqc

Directory

report.txt

679 B

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed.fastq.gz

543.11 MB

report.txt

678 B

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed.fastq.gz

434.37 MB

report.txt

678 B

STAR

smb-clip-gsk-24hr-4-20201021-ju_trimmed.bam.bai

3.99 MB

smb-clip-gsk-24hr-4-20201021-ju_trimmed_SJ.out.tab

1.08 MB

smb-clip-gsk-24hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-gsk-24hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

20.33 MB

smb-clip-gsk-24hr-4-20201021-ju_trimmed.bam

732.01 MB

Cutadapt (single-end)

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed.fastq.gz

316.17 MB

fastqc

Directory

report.txt

678 B

Cutadapt (single-end)

report.txt

679 B

fastqc

Directory

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed.fastq.gz

190.34 MB

Cutadapt (single-end)

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed.fastq.gz

271.49 MB

fastqc

Directory

report.txt

678 B

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed.fastq.gz

184.71 MB

report.txt

679 B

STAR

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed_SJ.out.tab

790.11 kB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed.bam.bai

4.01 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed.bam

659.67 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

66.83 MB

STAR

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

69.39 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed_SJ.out.tab

760.73 kB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed.bam.bai

3.76 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed.bam

563.47 MB

STAR

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

111.94 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed.bam

1.00 GB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed.bam.bai

4.12 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed_SJ.out.tab

1.29 MB

STAR

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed.bam

1005.36 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed_SJ.out.tab

1.35 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

128.88 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed.bam.bai

4.01 MB

STAR

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed_SJ.out.tab

798.82 kB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed.bam.bai

3.91 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

80.15 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed.bam

621.62 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

STAR

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed.bam.bai

3.96 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed_SJ.out.tab

1.44 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

154.05 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed.bam

1.03 GB

STAR

smb-clip-lly-24hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

12.71 MB

smb-clip-lly-24hr-4-20201021-ju_trimmed.bam

518.07 MB

smb-clip-lly-24hr-4-20201021-ju_trimmed.bam.bai

3.84 MB

smb-clip-lly-24hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-lly-24hr-4-20201021-ju_trimmed_SJ.out.tab

756.70 kB

STAR

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed.bam

1.12 GB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed_SJ.out.tab

1.56 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

161.45 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed.bam.bai

3.96 MB

STAR

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

78.40 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed.bam.bai

4.12 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed_SJ.out.tab

1.40 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed.bam

1012.48 MB

STAR

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed.bam.bai

4.00 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed_SJ.out.tab

838.17 kB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed.bam

557.87 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

52.21 MB

STAR

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed.bam.bai

4.06 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed.bam

774.20 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed_SJ.out.tab

1.04 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

82.09 MB

STAR

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed.bam

1.48 GB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed_SJ.out.tab

1.88 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

192.93 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed.bam.bai

4.05 MB

STAR

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed.bam.bai

3.94 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed_SJ.out.tab

842.58 kB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

45.61 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed.bam

561.79 MB

Cutadapt (single-end)

report.txt

667 B

fastqc

Directory

smb-clip-gsk-48hr-4-20201021-ju_trimmed.fastq.gz

232.85 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

667 B

smb-clip-lly-48hr-4-20201021-ju_trimmed.fastq.gz

188.57 MB

Cutadapt (single-end)

report.txt

668 B

fastqc

Directory

smb-clip-dmso-48hr-4-20201021-ju_trimmed.fastq.gz

202.04 MB

iCount xlsites

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

8.92 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_skipped.bam

3.94 kB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single.bed.gz

5.51 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

5.99 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single.bedgraph

24.99 MB

iCount group

SmB_CLIP_GSK_24hr_5group_grouped_reads.bed.gz

15.08 MB

SmB_CLIP_GSK_24hr_5group_grouped_cdna.bedgraph

67.61 MB

SmB_CLIP_GSK_24hr_5group_grouped_cdna.bed.gz

14.36 MB

iCount xlsites

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_skipped.bam

3.81 kB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single.bed.gz

8.83 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single.bedgraph

40.61 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

13.89 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

9.58 MB

iCount RNA-maps

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.42 MB

STAR

smb-clip-dmso-24hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-dmso-24hr-4-20201021-ju_trimmed.bam

1012.81 MB

smb-clip-dmso-24hr-4-20201021-ju_trimmed.bam.bai

4.07 MB

smb-clip-dmso-24hr-4-20201021-ju_trimmed_SJ.out.tab

1.40 MB

smb-clip-dmso-24hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

27.76 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-gsk-24hr-5-20201021-ju_trimmed.fastq.gz

230.37 MB

report.txt

667 B

iCount xlsites

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

5.26 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single.bedgraph

21.77 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

7.36 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single.bed.gz

4.81 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_skipped.bam

3.70 kB

iCount xlsites

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_skipped.bam

3.87 kB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

5.76 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single.bedgraph

23.98 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

8.32 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single.bed.gz

5.28 MB

iCount xlsites

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

11.33 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single.bedgraph

48.35 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_skipped.bam

4.15 kB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single.bed.gz

10.50 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

16.91 MB

Paraclu

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

40.52 kB

iCount RNA-maps

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.50 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

667 B

smb-clip-lly-24hr-5-20201021-ju_trimmed.fastq.gz

116.38 MB

iCount xlsites

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single.bed.gz

11.39 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

17.92 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single.bedgraph

52.64 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_skipped.bam

3.84 kB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

12.28 MB

iCount xlsites

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_skipped.bam

4.23 kB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single.bedgraph

60.42 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

21.28 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

14.00 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single.bed.gz

13.03 MB

iCount xlsites

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single.bedgraph

44.62 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_skipped.bam

4.53 kB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single.bed.gz

9.66 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

10.41 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

14.57 MB

iCount xlsites

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

9.59 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single.bedgraph

27.09 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_skipped.bam

3.79 kB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

6.46 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single.bed.gz

5.95 MB

iCount xlsites

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

8.66 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_skipped.bam

3.32 kB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

5.97 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single.bed.gz

5.49 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single.bedgraph

24.95 MB

iCount xlsites

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

9.05 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single.bedgraph

38.56 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

12.94 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_skipped.bam

4.24 kB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single.bed.gz

8.37 MB

Cutadapt (single-end)

report.txt

667 B

fastqc

Directory

smb-clip-gsk-24hr-4-20201021-ju_trimmed.fastq.gz

134.68 MB

iCount xlsites

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_skipped.bam

4.45 kB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

17.02 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single.bedgraph

74.06 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single.bed.gz

15.91 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

24.95 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-lly-24hr-4-20201021-ju_trimmed.fastq.gz

91.68 MB

report.txt

666 B

Paraclu

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

14.71 kB

iCount summary

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.59 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1009 B

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

439 B

iCount summary

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

436 B

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1015 B

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.49 MB

Paraclu

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

15.69 kB

iCount RNA-maps

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.00 MB

iCount summary

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

439 B

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.78 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1021 B

iCount summary

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.87 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

Paraclu

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

47.67 kB

iCount summary

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.88 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

PEKA

4mer analysis of smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome.tar.gz

571.27 kB

iCount summary

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.93 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

442 B

iCount RNA-maps

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.59 MB

Paraclu

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

60.07 kB

iCount summary

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1023 B

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.77 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

439 B

iCount summary

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

435 B

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1013 B

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.59 MB

Paraclu

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

19.20 kB

iCount RNA-maps

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.13 MB

iCount summary

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

439 B

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1010 B

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.56 MB

iCount summary

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.71 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1023 B

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

440 B

iCount RNA-maps

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.09 MB

iCount RNA-maps

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.51 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-24hr-4-20201021-ju_trimmed.fastq.gz

179.69 MB

report.txt

668 B

iCount summary

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

2.04 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

438 B

Paraclu

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

83.89 kB

PEKA

4mer analysis of smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome.tar.gz

493.46 kB

PEKA

4mer analysis of smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome.tar.gz

492.91 kB

PEKA

4mer analysis of smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome.tar.gz

559.04 kB

PEKA

4mer analysis of smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome.tar.gz

492.95 kB

PEKA

4mer analysis of smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome.tar.gz

552.81 kB

iCount peaks

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_scores.tsv.gz

163.51 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_peaks.bed.gz

5.69 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_peaks.bedgraph

19.04 MB

iCount xlsites

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single.bedgraph

38.31 MB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single.bed.gz

8.20 MB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

8.61 MB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.27 kB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

12.20 MB

iCount xlsites

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single.bedgraph

46.02 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single.bed.gz

9.85 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_reads_single.bed.gz

10.34 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

14.49 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_skipped.bam

4.22 kB

Paraclu

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single_peaks.bed.gz

72.93 kB

iCount xlsites

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

7.03 MB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_reads_single.bed.gz

4.43 MB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_skipped.bam

3.25 kB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single.bedgraph

19.08 MB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single.bed.gz

4.20 MB

Paraclu

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single_peaks.bed.gz

13.83 kB

iCount xlsites

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_skipped.bam

3.60 kB

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_reads_single.bed.gz

4.68 MB

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single.bed.gz

4.44 MB

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

7.60 MB

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single.bedgraph

20.14 MB

iCount RNA-maps

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single.tar.gz

1.39 MB

iCount xlsites

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single.bedgraph

23.11 MB

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

7.98 MB

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

5.32 MB

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single.bed.gz

5.04 MB

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.46 kB

iCount xlsites

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single.bed.gz

3.17 MB

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

3.34 MB

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.41 kB

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single.bedgraph

14.34 MB

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

5.36 MB

iCount RNA-maps

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single.tar.gz

1.27 MB

iCount xlsites

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single.bed.gz

6.17 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

9.63 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

6.48 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single.bedgraph

28.57 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.47 kB

iCount RNA-maps

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single.tar.gz

1.98 MB

Paraclu

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

37.86 kB

iCount clusters

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_clustered.bed.gz

1.23 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_clustered.bedgraph

3.61 MB

iCount clusters

SmB_CLIP_LLY_48hr_4group_grouped_cdna_clustered.bed.gz

1.96 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna_clustered.bedgraph

3.23 MB

iCount clusters

SmB_CLIP_GSK_48hr_4group_grouped_cdna_clustered.bed.gz

1.74 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna_clustered.bedgraph

5.21 MB

iCount summary

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.46 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1021 B

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

627 B

iCount RNA-maps

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single.tar.gz

2.38 MB

Paraclu

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

67.09 kB

iCount summary

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

625 B

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1022 B

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.40 MB

iCount summary

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

624 B

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.35 MB

iCount RNA-maps

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single.tar.gz

2.28 MB

Paraclu

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

39.65 kB

PEKA

4mer analysis of smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome.tar.gz

558.11 kB

Paraclu

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

62.59 kB

PEKA

4mer analysis of smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome.tar.gz

530.95 kB

PEKA

4mer analysis of smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome.tar.gz

565.28 kB

iCount summary

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1022 B

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single_summary_type.tsv

629 B

iCount RNA-maps

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single.tar.gz

2.43 MB

iCount summary

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.16 MB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single_summary_type.tsv

621 B

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1008 B

iCount summary

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single_summary_type.tsv

621 B

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1010 B

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.19 MB

iCount RNA-maps

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single.tar.gz

1.35 MB

PEKA

4mer analysis of smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome.tar.gz

485.46 kB

iCount summary

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

616 B

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1008 B

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.21 MB

iCount RNA-maps

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single.tar.gz

1.73 MB

iCount summary

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1009 B

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

616 B

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.01 MB

Paraclu

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

9.41 kB

Paraclu

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

20.55 kB

PEKA

4mer analysis of smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome.tar.gz

521.65 kB

iCount summary

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1019 B

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.26 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

621 B

Paraclu

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_peaks.bed.gz

476.29 kB

iCount RNA-maps

SmB_CLIP_DMSO_24hr_5group_grouped_cdna.tar.gz

253.28 kB

iCount annotate

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_annotated.bed.gz

41.39 MB

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_annotated.bedgraph

193.84 MB

iCount summary

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_summary_type.tsv

430 B

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_summary_subtype.tsv

592 B

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_summary_gene.tsv

1.21 kB

iCount group

SmB_CLIP_DMSO_24hr_5group_grouped_cdna.bed.gz

40.94 MB

SmB_CLIP_DMSO_24hr_5group_grouped_reads.bed.gz

43.22 MB

SmB_CLIP_DMSO_24hr_5group_grouped_cdna.bedgraph

194.88 MB

iCount annotate

SmB_CLIP_LLY_24hr_5group_grouped_cdna_annotated.bed.gz

48.95 MB

SmB_CLIP_LLY_24hr_5group_grouped_cdna_annotated.bedgraph

229.39 MB

iCount summary

SmB_CLIP_LLY_24hr_5group_grouped_cdna_summary_type.tsv

429 B

SmB_CLIP_LLY_24hr_5group_grouped_cdna_summary_subtype.tsv

531 B

SmB_CLIP_LLY_24hr_5group_grouped_cdna_summary_gene.tsv

1.13 kB

Paraclu

SmB_CLIP_LLY_24hr_5group_grouped_cdna_peaks.bed.gz

553.58 kB

iCount RNA-maps

SmB_CLIP_LLY_24hr_5group_grouped_cdna.tar.gz

275.52 kB

iCount group

SmB_CLIP_LLY_24hr_5group_grouped_cdna.bed.gz

48.41 MB

SmB_CLIP_LLY_24hr_5group_grouped_reads.bed.gz

51.09 MB

SmB_CLIP_LLY_24hr_5group_grouped_cdna.bedgraph

230.63 MB

iCount RNA-maps

SmB_CLIP_GSK_24hr_5group_grouped_cdna.tar.gz

190.17 kB

iCount summary

SmB_CLIP_GSK_24hr_5group_grouped_cdna_summary_type.tsv

420 B

SmB_CLIP_GSK_24hr_5group_grouped_cdna_summary_subtype.tsv

518 B

SmB_CLIP_GSK_24hr_5group_grouped_cdna_summary_gene.tsv

795 B

Paraclu

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_peaks.bed.gz

560.74 kB

iCount RNA-maps

SmB_CLIP_DMSO_48hr_4group_grouped_cdna.tar.gz

253.63 kB

iCount summary

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_summary_type.tsv

428 B

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_summary_subtype.tsv

526 B

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_summary_gene.tsv

1.13 kB

Paraclu

SmB_CLIP_LLY_48hr_4group_grouped_cdna_peaks.bed.gz

646.38 kB

iCount RNA-maps

SmB_CLIP_LLY_48hr_4group_grouped_cdna.tar.gz

297.90 kB

iCount group

SmB_CLIP_LLY_48hr_4group_grouped_cdna.bed.gz

43.82 MB

SmB_CLIP_LLY_48hr_4group_grouped_reads.bed.gz

46.23 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna.bedgraph

209.71 MB

iCount RNA-maps

SmB_CLIP_GSK_48hr_4group_grouped_cdna.tar.gz

286.06 kB

Paraclu

SmB_CLIP_GSK_48hr_4group_grouped_cdna_peaks.bed.gz

808.54 kB

iCount annotate

SmB_CLIP_GSK_24hr_5group_grouped_cdna_annotated.bed.gz

14.55 MB

SmB_CLIP_GSK_24hr_5group_grouped_cdna_annotated.bedgraph

67.32 MB

iCount group

SmB_CLIP_DMSO_48hr_4group_grouped_cdna.bed.gz

39.52 MB

SmB_CLIP_DMSO_48hr_4group_grouped_reads.bed.gz

41.70 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna.bedgraph

188.94 MB

iCount group

SmB_CLIP_GSK_48hr_4group_grouped_cdna.bed.gz

52.19 MB

SmB_CLIP_GSK_48hr_4group_grouped_reads.bed.gz

55.07 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna.bedgraph

250.44 MB

Paraclu

SmB_CLIP_GSK_24hr_5group_grouped_cdna_peaks.bed.gz

130.04 kB

iCount annotate

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_annotated.bed.gz

39.99 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_annotated.bedgraph

188.02 MB

iCount annotate

SmB_CLIP_LLY_48hr_4group_grouped_cdna_annotated.bed.gz

44.34 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna_annotated.bedgraph

208.72 MB

iCount annotate

SmB_CLIP_GSK_48hr_4group_grouped_cdna_annotated.bed.gz

52.82 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna_annotated.bedgraph

249.24 MB

iCount summary

SmB_CLIP_GSK_48hr_4group_grouped_cdna_summary_type.tsv

431 B

SmB_CLIP_GSK_48hr_4group_grouped_cdna_summary_subtype.tsv

526 B

SmB_CLIP_GSK_48hr_4group_grouped_cdna_summary_gene.tsv

982 B

iCount summary

SmB_CLIP_LLY_48hr_4group_grouped_cdna_summary_type.tsv

430 B

SmB_CLIP_LLY_48hr_4group_grouped_cdna_summary_subtype.tsv

591 B

SmB_CLIP_LLY_48hr_4group_grouped_cdna_summary_gene.tsv

1.12 kB

PEKA

4mer analysis of SmB_CLIP_DMSO_24hr_5group_grouped_cdna.tar.gz

162 B

PEKA

4mer analysis of SmB_CLIP_GSK_24hr_5group_grouped_cdna.tar.gz

161 B

PEKA

4mer analysis of SmB_CLIP_LLY_24hr_5group_grouped_cdna.tar.gz

161 B

PEKA

4mer analysis of SmB_CLIP_DMSO_48hr_4group_grouped_cdna.tar.gz

163 B

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_4group_grouped_cdna.tar.gz

162 B

PEKA

4mer analysis of SmB_CLIP_GSK_48hr_4group_grouped_cdna.tar.gz

163 B

iCount group

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna.bed.gz

9.75 MB

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_reads.bed.gz

10.63 MB

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna.bedgraph

45.03 MB

iCount annotate

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_annotated.bed.gz

12.58 MB

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_annotated.bedgraph

45.03 MB

Paraclu

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_peaks.bed.gz

42.74 kB

iCount RNA-maps

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna.tar.gz

1.41 MB

Paraclu

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_peaks.bed.gz

48.33 kB

iCount RNA-maps

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna.tar.gz

1.55 MB

iCount group

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna.bed.gz

11.07 MB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_reads.bed.gz

12.01 MB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna.bedgraph

51.25 MB

iCount summary

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_summary_type.tsv

443 B

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_summary_subtype.tsv

1021 B

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_summary_gene.tsv

2.54 MB

iCount summary

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_summary_type.tsv

443 B

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_summary_subtype.tsv

1.00 kB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_summary_gene.tsv

2.63 MB

iCount annotate

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_annotated.bed.gz

14.21 MB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_annotated.bedgraph

51.25 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna.tar.gz

580.63 kB

PEKA

4mer analysis of SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna.tar.gz

590.09 kB

iCount annotate

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_annotated.bed.gz

26.42 MB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_annotated.bedgraph

98.92 MB

iCount summary

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_summary_type.tsv

440 B

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_summary_subtype.tsv

1.01 kB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_summary_gene.tsv

3.05 MB

iCount RNA-maps

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna.tar.gz

2.16 MB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna.tar.gz

658.78 kB

iCount group

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna.bed.gz

21.14 MB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_reads.bed.gz

22.76 MB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna.bedgraph

98.92 MB

Paraclu

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_peaks.bed.gz

126.35 kB

SmB_CLIP_GSK_48hr_1

FASTQ file (CLIP)

fastqc

Directory

smb-clip-gsk-48hr-1.fastq.gz

453.19 MB

smb-clip-gsk-48hr-1_fastqc.zip

488.80 kB

STAR

smb-clip-gsk-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

72.14 MB

smb-clip-gsk-48hr-1_trimmed.bam.bai

4.53 MB

smb-clip-gsk-48hr-1_trimmed_SJ.out.tab

2.75 MB

smb-clip-gsk-48hr-1_trimmed_stats.txt

1.82 kB

smb-clip-gsk-48hr-1_trimmed.bam

2.19 GB

iCount xlsites

smb-clip-gsk-48hr-1_mapped_to_genome_reads_single.bed.gz

15.08 MB

smb-clip-gsk-48hr-1_mapped_to_genome_single.bedgraph

66.67 MB

smb-clip-gsk-48hr-1_mapped_to_genome_skipped.bam

4.25 kB

smb-clip-gsk-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

22.15 MB

smb-clip-gsk-48hr-1_mapped_to_genome_single.bed.gz

14.16 MB

iCount summary

smb-clip-gsk-48hr-1_mapped_to_genome_single_summary_gene.tsv

1.97 MB

smb-clip-gsk-48hr-1_mapped_to_genome_single_summary_type.tsv

442 B

smb-clip-gsk-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1023 B

Paraclu

smb-clip-gsk-48hr-1_mapped_to_genome_single_peaks.bed.gz

142.77 kB

PEKA

4mer analysis of smb-clip-gsk-48hr-1_mapped_to_genome.tar.gz

612.19 kB

iCount RNA-maps

smb-clip-gsk-48hr-1_mapped_to_genome_single.tar.gz

2.99 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

655 B

smb-clip-gsk-48hr-1_trimmed.fastq.gz

469.47 MB

GRI1109A2-A35_S7_L002_R1_001.fastq.gz

FASTQ file (single-end)

fastqc

Directory

GRI1109A2-A35_S7_L002_R1_001_fastqc.zip

502.20 kB

GRI1109A2-A35_S7_L002_R1_001.fastq.gz

16.77 GB

stderr.txt

1.21 kB

SmB_CLIP_mock_input_DMSO_24hr_2_20200812_LG

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-dmso-24hr-2-20200812-lg.fastq.gz

179.65 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_fastqc.zip

448.34 kB

Paraclu

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

16.99 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed.fastq.gz

184.71 MB

report.txt

679 B

STAR

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed.bam.bai

3.94 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed_SJ.out.tab

842.58 kB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

45.61 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_trimmed.bam

561.79 MB

iCount xlsites

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

8.66 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_skipped.bam

3.32 kB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

5.97 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single.bed.gz

5.49 MB

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single.bedgraph

24.95 MB

iCount summary

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

439 B

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1010 B

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.56 MB

iCount RNA-maps

smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.09 MB

PEKA

4mer analysis of smb-clip-mock-input-dmso-24hr-2-20200812-lg_mapped_to_genome.tar.gz

492.95 kB

SmB_CLIP_mock_input_DMSO_24hr_3_20200812_LG

FASTQ file (CLIP)

smb-clip-mock-input-dmso-24hr-3-20200812-lg.fastq.gz

186.46 MB

fastqc

Directory

smb-clip-mock-input-dmso-24hr-3-20200812-lg_fastqc.zip

452.09 kB

PEKA

4mer analysis of smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome.tar.gz

506.62 kB

Cutadapt (single-end)

report.txt

679 B

fastqc

Directory

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed.fastq.gz

190.34 MB

STAR

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed.bam.bai

4.00 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed_SJ.out.tab

838.17 kB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed.bam

557.87 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

52.21 MB

iCount xlsites

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

9.59 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single.bedgraph

27.09 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_skipped.bam

3.79 kB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

6.46 MB

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single.bed.gz

5.95 MB

iCount summary

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

435 B

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1013 B

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.59 MB

Paraclu

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

19.20 kB

iCount RNA-maps

smb-clip-mock-input-dmso-24hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.13 MB

SmB_CLIP_mock_input_LLY_24hr_2_20200812_LG

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-24hr-2-20200812-lg.fastq.gz

265.82 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_fastqc.zip

452.74 kB

iCount RNA-maps

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.34 MB

Paraclu

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

35.98 kB

Cutadapt (single-end)

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed.fastq.gz

271.49 MB

fastqc

Directory

report.txt

678 B

STAR

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed.bam.bai

4.06 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed.bam

774.20 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed_SJ.out.tab

1.04 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

82.09 MB

iCount xlsites

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

9.05 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single.bedgraph

38.56 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

12.94 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_skipped.bam

4.24 kB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single.bed.gz

8.37 MB

iCount summary

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.71 MB

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1023 B

smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

440 B

PEKA

4mer analysis of smb-clip-mock-input-lly-24hr-2-20200812-lg_mapped_to_genome.tar.gz

552.81 kB

SmB_CLIP_mock_input_GSK_24hr_2_20200812_LG

FASTQ file (CLIP)

smb-clip-mock-input-gsk-24hr-2-20200812-lg_fastqc.zip

436.28 kB

fastqc

Directory

smb-clip-mock-input-gsk-24hr-2-20200812-lg.fastq.gz

527.71 MB

iCount RNA-maps

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.88 MB

PEKA

4mer analysis of smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome.tar.gz

627.12 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed.fastq.gz

543.11 MB

report.txt

678 B

STAR

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed.bam

1.48 GB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed_SJ.out.tab

1.88 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

192.93 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_trimmed.bam.bai

4.05 MB

iCount xlsites

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_skipped.bam

4.45 kB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

17.02 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single.bedgraph

74.06 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single.bed.gz

15.91 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

24.95 MB

iCount summary

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

2.04 MB

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

438 B

Paraclu

smb-clip-mock-input-gsk-24hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

83.89 kB

SmB_CLIP_mock_input_GSK_48hr_2_20200812_LG

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-gsk-48hr-2-20200812-lg.fastq.gz

337.18 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_fastqc.zip

445.11 kB

Paraclu

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

32.39 kB

PEKA

4mer analysis of smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome.tar.gz

551.30 kB

Cutadapt (single-end)

report.txt

678 B

fastqc

Directory

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed.fastq.gz

347.42 MB

STAR

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

111.94 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed.bam

1.00 GB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed.bam.bai

4.12 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_trimmed_SJ.out.tab

1.29 MB

iCount xlsites

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_skipped.bam

3.81 kB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single.bed.gz

8.83 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single.bedgraph

40.61 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

13.89 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

9.58 MB

iCount RNA-maps

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.42 MB

iCount summary

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

439 B

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.78 MB

smb-clip-mock-input-gsk-48hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1021 B

SmB_CLIP_mock_input_GSK_48hr_3_20200812_LG

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-gsk-48hr-3-20200812-lg_fastqc.zip

448.77 kB

smb-clip-mock-input-gsk-48hr-3-20200812-lg.fastq.gz

211.36 MB

iCount RNA-maps

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.06 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed.fastq.gz

217.47 MB

report.txt

678 B

STAR

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed_SJ.out.tab

790.11 kB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed.bam.bai

4.01 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed.bam

659.67 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

66.83 MB

iCount xlsites

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

8.92 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_skipped.bam

3.94 kB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single.bed.gz

5.51 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

5.99 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single.bedgraph

24.99 MB

iCount summary

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.59 MB

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1009 B

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

439 B

Paraclu

smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

15.69 kB

PEKA

4mer analysis of smb-clip-mock-input-gsk-48hr-3-20200812-lg_mapped_to_genome.tar.gz

493.46 kB

SmB_CLIP_DMSO_48hrs_grouped_norep3

iCount group

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna.bed.gz

33.42 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_reads.bed.gz

35.30 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna.bedgraph

159.69 MB

Paraclu

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_peaks.bed.gz

478.72 kB

iCount summary

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_summary_type.tsv

447 B

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_summary_subtype.tsv

1.01 kB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_summary_gene.tsv

3.23 MB

iCount RNA-maps

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna.tar.gz

4.55 MB

iCount annotate

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_annotated.bed.gz

41.87 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_annotated.bedgraph

159.69 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna.tar.gz

723.76 kB

iCount peaks

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_peaks.bed.gz

3.36 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_scores.tsv.gz

24.60 MB

SmB_CLIP_DMSO_48hrs_grouped_norep3_grouped_cdna_peaks.bedgraph

15.41 MB

SmB_CLIP_LLY_48hr_grouped_norep3

iCount group

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna.bed.gz

38.85 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_reads.bed.gz

41.00 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna.bedgraph

185.93 MB

iCount summary

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_summary_type.tsv

448 B

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_summary_gene.tsv

3.33 MB

Paraclu

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_peaks.bed.gz

582.11 kB

iCount RNA-maps

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna.tar.gz

4.85 MB

iCount annotate

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_annotated.bed.gz

48.35 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_annotated.bedgraph

185.93 MB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna.tar.gz

749.45 kB

iCount peaks

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_peaks.bed.gz

4.38 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_scores.tsv.gz

28.57 MB

SmB_CLIP_LLY_48hr_grouped_norep3_grouped_cdna_peaks.bedgraph

20.26 MB

DMSO_48hr_mock_inputs_grouped

iCount annotate

DMSO_48hr_mock_inputs_grouped_grouped_cdna_annotated.bedgraph

68.41 MB

DMSO_48hr_mock_inputs_grouped_grouped_cdna_annotated.bed.gz

18.67 MB

iCount RNA-maps

DMSO_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

1.71 MB

PEKA

4mer analysis of DMSO_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

638.72 kB

iCount group

DMSO_48hr_mock_inputs_grouped_grouped_reads.bed.gz

15.93 MB

DMSO_48hr_mock_inputs_grouped_grouped_cdna.bedgraph

68.41 MB

DMSO_48hr_mock_inputs_grouped_grouped_cdna.bed.gz

14.75 MB

iCount summary

DMSO_48hr_mock_inputs_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

DMSO_48hr_mock_inputs_grouped_grouped_cdna_summary_type.tsv

443 B

DMSO_48hr_mock_inputs_grouped_grouped_cdna_summary_gene.tsv

2.86 MB

Paraclu

DMSO_48hr_mock_inputs_grouped_grouped_cdna_peaks.bed.gz

83.69 kB

GSK_48hr_mock_inputs_grouped

PEKA

4mer analysis of GSK_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

671.91 kB

iCount group

GSK_48hr_mock_inputs_grouped_grouped_cdna.bedgraph

108.01 MB

GSK_48hr_mock_inputs_grouped_grouped_reads.bed.gz

24.78 MB

GSK_48hr_mock_inputs_grouped_grouped_cdna.bed.gz

23.07 MB

Paraclu

GSK_48hr_mock_inputs_grouped_grouped_cdna_peaks.bed.gz

146.23 kB

iCount summary

GSK_48hr_mock_inputs_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

GSK_48hr_mock_inputs_grouped_grouped_cdna_summary_gene.tsv

3.13 MB

GSK_48hr_mock_inputs_grouped_grouped_cdna_summary_type.tsv

445 B

iCount RNA-maps

GSK_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

2.25 MB

iCount annotate

GSK_48hr_mock_inputs_grouped_grouped_cdna_annotated.bedgraph

108.01 MB

GSK_48hr_mock_inputs_grouped_grouped_cdna_annotated.bed.gz

28.72 MB

SmB_GSK_48hrs_grouped_norep3

iCount group

SmB_GSK_48hrs_grouped_norep3_grouped_cdna.bed.gz

43.61 MB

SmB_GSK_48hrs_grouped_norep3_grouped_reads.bed.gz

46.06 MB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna.bedgraph

208.86 MB

Paraclu

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_peaks.bed.gz

651.63 kB

iCount summary

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_summary_type.tsv

449 B

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_summary_gene.tsv

3.38 MB

iCount RNA-maps

SmB_GSK_48hrs_grouped_norep3_grouped_cdna.tar.gz

5.07 MB

iCount annotate

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_annotated.bed.gz

54.00 MB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_annotated.bedgraph

208.86 MB

PEKA

4mer analysis of SmB_GSK_48hrs_grouped_norep3_grouped_cdna.tar.gz

759.26 kB

iCount peaks

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_peaks.bed.gz

4.88 MB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_scores.tsv.gz

31.95 MB

SmB_GSK_48hrs_grouped_norep3_grouped_cdna_peaks.bedgraph

22.58 MB

LLY_48hr_mock_inputs_grouped

iCount RNA-maps

LLY_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

2.29 MB

iCount summary

LLY_48hr_mock_inputs_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

LLY_48hr_mock_inputs_grouped_grouped_cdna_summary_gene.tsv

3.18 MB

LLY_48hr_mock_inputs_grouped_grouped_cdna_summary_type.tsv

442 B

iCount annotate

LLY_48hr_mock_inputs_grouped_grouped_cdna_annotated.bedgraph

112.51 MB

LLY_48hr_mock_inputs_grouped_grouped_cdna_annotated.bed.gz

29.86 MB

iCount group

LLY_48hr_mock_inputs_grouped_grouped_cdna.bedgraph

112.51 MB

LLY_48hr_mock_inputs_grouped_grouped_reads.bed.gz

25.80 MB

LLY_48hr_mock_inputs_grouped_grouped_cdna.bed.gz

24.03 MB

Paraclu

LLY_48hr_mock_inputs_grouped_grouped_cdna_peaks.bed.gz

158.66 kB

PEKA

4mer analysis of LLY_48hr_mock_inputs_grouped_grouped_cdna.tar.gz

679.57 kB

SmB_CLIP_mock_input_DMSO_48hr_3_20200812_LG

FASTQ file (CLIP)

smb-clip-mock-input-dmso-48hr-3-20200812-lg.fastq.gz

201.98 MB

fastqc

Directory

smb-clip-mock-input-dmso-48hr-3-20200812-lg_fastqc.zip

446.53 kB

Cutadapt (single-end)

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed.fastq.gz

208.76 MB

fastqc

Directory

report.txt

679 B

STAR

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

69.39 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed_SJ.out.tab

760.73 kB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed.bam.bai

3.76 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_trimmed.bam

563.47 MB

iCount xlsites

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

5.26 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single.bedgraph

21.77 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

7.36 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single.bed.gz

4.81 MB

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_skipped.bam

3.70 kB

Paraclu

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

14.71 kB

iCount summary

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

436 B

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1015 B

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.49 MB

iCount RNA-maps

smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.00 MB

PEKA

4mer analysis of smb-clip-mock-input-dmso-48hr-3-20200812-lg_mapped_to_genome.tar.gz

492.91 kB

SmB_CLIP_mock_input_LLY_48hr_3_20200812_LG

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-48hr-3-20200812-lg.fastq.gz

358.60 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_fastqc.zip

446.42 kB

Cutadapt (single-end)

report.txt

678 B

fastqc

Directory

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed.fastq.gz

366.71 MB

STAR

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed.bam

1005.36 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed_SJ.out.tab

1.35 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

128.88 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_trimmed.bam.bai

4.01 MB

iCount xlsites

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

11.33 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single.bedgraph

48.35 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_skipped.bam

4.15 kB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single.bed.gz

10.50 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

16.91 MB

Paraclu

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

40.52 kB

iCount RNA-maps

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.50 MB

iCount summary

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.87 MB

smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

PEKA

4mer analysis of smb-clip-mock-input-lly-48hr-3-20200812-lg_mapped_to_genome.tar.gz

571.27 kB

SmB_CLIP_mock_input_DMSO_48hr_2_20200812_LG

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-dmso-48hr-2-20200812-lg_fastqc.zip

460.29 kB

smb-clip-mock-input-dmso-48hr-2-20200812-lg.fastq.gz

220.47 MB

iCount summary

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.56 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1013 B

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

438 B

Paraclu

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

17.86 kB

iCount RNA-maps

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.04 MB

PEKA

4mer analysis of smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome.tar.gz

504.95 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

679 B

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed.fastq.gz

226.12 MB

STAR

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed_SJ.out.tab

798.82 kB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed.bam.bai

3.91 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

80.15 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed.bam

621.62 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

iCount xlsites

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_skipped.bam

3.87 kB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

5.76 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single.bedgraph

23.98 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

8.32 MB

smb-clip-mock-input-dmso-48hr-2-20200812-lg_mapped_to_genome_single.bed.gz

5.28 MB

SmB_CLIP_mock_input_LLY_48hr_2_20200812_LG

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-48hr-2-20200812-lg_fastqc.zip

436.75 kB

smb-clip-mock-input-lly-48hr-2-20200812-lg.fastq.gz

396.11 MB

PEKA

4mer analysis of smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome.tar.gz

570.43 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed.fastq.gz

406.86 MB

report.txt

678 B

STAR

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed.bam.bai

3.96 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed_SJ.out.tab

1.44 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

154.05 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_trimmed.bam

1.03 GB

iCount xlsites

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single.bed.gz

11.39 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

17.92 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single.bedgraph

52.64 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_skipped.bam

3.84 kB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_reads_single.bed.gz

12.28 MB

Paraclu

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single_peaks.bed.gz

47.67 kB

iCount summary

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.88 MB

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

iCount RNA-maps

smb-clip-mock-input-lly-48hr-2-20200812-lg_mapped_to_genome_single.tar.gz

1.59 MB

SmB_CLIP_mock_input_GSK_24hr_3_20200812_LG

FASTQ file (CLIP)

smb-clip-mock-input-gsk-24hr-3-20200812-lg.fastq.gz

422.34 MB

fastqc

Directory

smb-clip-mock-input-gsk-24hr-3-20200812-lg_fastqc.zip

435.83 kB

iCount RNA-maps

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.70 MB

PEKA

4mer analysis of smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome.tar.gz

604.59 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed.fastq.gz

434.37 MB

report.txt

678 B

STAR

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed.bam

1.12 GB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed_SJ.out.tab

1.56 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

161.45 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_trimmed.bam.bai

3.96 MB

iCount xlsites

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_skipped.bam

4.23 kB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single.bedgraph

60.42 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

21.28 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

14.00 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single.bed.gz

13.03 MB

iCount summary

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.93 MB

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

442 B

Paraclu

smb-clip-mock-input-gsk-24hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

60.07 kB

SmB_CLIP_mock_input_LLY_24hr_3_20200812_LG

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-24hr-3-20200812-lg_fastqc.zip

443.55 kB

smb-clip-mock-input-lly-24hr-3-20200812-lg.fastq.gz

307.36 MB

Paraclu

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single_peaks.bed.gz

40.62 kB

Cutadapt (single-end)

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed.fastq.gz

316.17 MB

fastqc

Directory

report.txt

678 B

STAR

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed_unmapped.out.mate1.fastq.gz

78.40 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed.bam.bai

4.12 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed_SJ.out.tab

1.40 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_trimmed.bam

1012.48 MB

iCount xlsites

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single.bedgraph

44.62 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_skipped.bam

4.53 kB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single.bed.gz

9.66 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_reads_single.bed.gz

10.41 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_singleAndMulti.bed.gz

14.57 MB

iCount summary

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single_summary_subtype.tsv

1023 B

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single_summary_gene.tsv

1.77 MB

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single_summary_type.tsv

439 B

iCount RNA-maps

smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome_single.tar.gz

1.51 MB

PEKA

4mer analysis of smb-clip-mock-input-lly-24hr-3-20200812-lg_mapped_to_genome.tar.gz

559.04 kB

SmB_CLIP_DMSO_24hr_5group

Paraclu

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_peaks.bed.gz

476.29 kB

iCount RNA-maps

SmB_CLIP_DMSO_24hr_5group_grouped_cdna.tar.gz

253.28 kB

iCount annotate

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_annotated.bed.gz

41.39 MB

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_annotated.bedgraph

193.84 MB

iCount summary

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_summary_type.tsv

430 B

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_summary_subtype.tsv

592 B

SmB_CLIP_DMSO_24hr_5group_grouped_cdna_summary_gene.tsv

1.21 kB

iCount group

SmB_CLIP_DMSO_24hr_5group_grouped_cdna.bed.gz

40.94 MB

SmB_CLIP_DMSO_24hr_5group_grouped_reads.bed.gz

43.22 MB

SmB_CLIP_DMSO_24hr_5group_grouped_cdna.bedgraph

194.88 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_24hr_5group_grouped_cdna.tar.gz

162 B

SmB_CLIP_LLY_24hr_5group

iCount annotate

SmB_CLIP_LLY_24hr_5group_grouped_cdna_annotated.bed.gz

48.95 MB

SmB_CLIP_LLY_24hr_5group_grouped_cdna_annotated.bedgraph

229.39 MB

iCount summary

SmB_CLIP_LLY_24hr_5group_grouped_cdna_summary_type.tsv

429 B

SmB_CLIP_LLY_24hr_5group_grouped_cdna_summary_subtype.tsv

531 B

SmB_CLIP_LLY_24hr_5group_grouped_cdna_summary_gene.tsv

1.13 kB

Paraclu

SmB_CLIP_LLY_24hr_5group_grouped_cdna_peaks.bed.gz

553.58 kB

iCount RNA-maps

SmB_CLIP_LLY_24hr_5group_grouped_cdna.tar.gz

275.52 kB

iCount group

SmB_CLIP_LLY_24hr_5group_grouped_cdna.bed.gz

48.41 MB

SmB_CLIP_LLY_24hr_5group_grouped_reads.bed.gz

51.09 MB

SmB_CLIP_LLY_24hr_5group_grouped_cdna.bedgraph

230.63 MB

PEKA

4mer analysis of SmB_CLIP_LLY_24hr_5group_grouped_cdna.tar.gz

161 B

SmB_CLIP_GSK_24hr_5group

iCount RNA-maps

SmB_CLIP_GSK_24hr_5group_grouped_cdna.tar.gz

190.17 kB

iCount summary

SmB_CLIP_GSK_24hr_5group_grouped_cdna_summary_type.tsv

420 B

SmB_CLIP_GSK_24hr_5group_grouped_cdna_summary_subtype.tsv

518 B

SmB_CLIP_GSK_24hr_5group_grouped_cdna_summary_gene.tsv

795 B

iCount group

SmB_CLIP_GSK_24hr_5group_grouped_cdna.bed.gz

14.36 MB

SmB_CLIP_GSK_24hr_5group_grouped_reads.bed.gz

15.08 MB

SmB_CLIP_GSK_24hr_5group_grouped_cdna.bedgraph

67.61 MB

iCount annotate

SmB_CLIP_GSK_24hr_5group_grouped_cdna_annotated.bed.gz

14.55 MB

SmB_CLIP_GSK_24hr_5group_grouped_cdna_annotated.bedgraph

67.32 MB

Paraclu

SmB_CLIP_GSK_24hr_5group_grouped_cdna_peaks.bed.gz

130.04 kB

PEKA

4mer analysis of SmB_CLIP_GSK_24hr_5group_grouped_cdna.tar.gz

161 B

SmB_CLIP_DMSO_48hr_4group

iCount peaks

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_peaks.bed.gz

3.95 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_scores.tsv.gz

28.95 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_peaks.bedgraph

18.14 MB

Paraclu

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_peaks.bed.gz

560.74 kB

iCount RNA-maps

SmB_CLIP_DMSO_48hr_4group_grouped_cdna.tar.gz

253.63 kB

iCount summary

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_summary_type.tsv

428 B

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_summary_subtype.tsv

526 B

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_summary_gene.tsv

1.13 kB

iCount group

SmB_CLIP_DMSO_48hr_4group_grouped_cdna.bed.gz

39.52 MB

SmB_CLIP_DMSO_48hr_4group_grouped_reads.bed.gz

41.70 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna.bedgraph

188.94 MB

iCount annotate

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_annotated.bed.gz

39.99 MB

SmB_CLIP_DMSO_48hr_4group_grouped_cdna_annotated.bedgraph

188.02 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hr_4group_grouped_cdna.tar.gz

163 B

SmB_CLIP_LLY_48hr_4group

iCount peaks

SmB_CLIP_LLY_48hr_4group_grouped_cdna_peaks.bed.gz

4.90 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna_scores.tsv.gz

32.10 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna_peaks.bedgraph

22.67 MB

Paraclu

SmB_CLIP_LLY_48hr_4group_grouped_cdna_peaks.bed.gz

646.38 kB

iCount RNA-maps

SmB_CLIP_LLY_48hr_4group_grouped_cdna.tar.gz

297.90 kB

iCount group

SmB_CLIP_LLY_48hr_4group_grouped_cdna.bed.gz

43.82 MB

SmB_CLIP_LLY_48hr_4group_grouped_reads.bed.gz

46.23 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna.bedgraph

209.71 MB

iCount annotate

SmB_CLIP_LLY_48hr_4group_grouped_cdna_annotated.bed.gz

44.34 MB

SmB_CLIP_LLY_48hr_4group_grouped_cdna_annotated.bedgraph

208.72 MB

iCount summary

SmB_CLIP_LLY_48hr_4group_grouped_cdna_summary_type.tsv

430 B

SmB_CLIP_LLY_48hr_4group_grouped_cdna_summary_subtype.tsv

591 B

SmB_CLIP_LLY_48hr_4group_grouped_cdna_summary_gene.tsv

1.12 kB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_4group_grouped_cdna.tar.gz

162 B

SmB_CLIP_GSK_48hr_4group

iCount peaks

SmB_CLIP_GSK_48hr_4group_grouped_cdna_peaks.bed.gz

6.42 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna_scores.tsv.gz

38.16 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna_peaks.bedgraph

29.91 MB

iCount RNA-maps

SmB_CLIP_GSK_48hr_4group_grouped_cdna.tar.gz

286.06 kB

Paraclu

SmB_CLIP_GSK_48hr_4group_grouped_cdna_peaks.bed.gz

808.54 kB

iCount group

SmB_CLIP_GSK_48hr_4group_grouped_cdna.bed.gz

52.19 MB

SmB_CLIP_GSK_48hr_4group_grouped_reads.bed.gz

55.07 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna.bedgraph

250.44 MB

iCount annotate

SmB_CLIP_GSK_48hr_4group_grouped_cdna_annotated.bed.gz

52.82 MB

SmB_CLIP_GSK_48hr_4group_grouped_cdna_annotated.bedgraph

249.24 MB

iCount summary

SmB_CLIP_GSK_48hr_4group_grouped_cdna_summary_type.tsv

431 B

SmB_CLIP_GSK_48hr_4group_grouped_cdna_summary_subtype.tsv

526 B

SmB_CLIP_GSK_48hr_4group_grouped_cdna_summary_gene.tsv

982 B

PEKA

4mer analysis of SmB_CLIP_GSK_48hr_4group_grouped_cdna.tar.gz

163 B

GRI957A35-A68_S346_L008_R1_001.fastq.gz

FASTQ file (single-end)

fastqc

Directory

GRI957A35-A68_S346_L008_R1_001.fastq.gz

17.29 GB

stderr.txt

1.25 kB

GRI957A35-A68_S346_L008_R1_001_fastqc.zip

502.54 kB

SmB_CLIP_DMSO_48hr_2

STAR

smb-clip-dmso-48hr-2_trimmed_unmapped.out.mate1.fastq.gz

36.99 MB

smb-clip-dmso-48hr-2_trimmed.bam

1.01 GB

smb-clip-dmso-48hr-2_trimmed_stats.txt

1.81 kB

smb-clip-dmso-48hr-2_trimmed.bam.bai

4.17 MB

smb-clip-dmso-48hr-2_trimmed_SJ.out.tab

1.73 MB

iCount xlsites

smb-clip-dmso-48hr-2_mapped_to_genome_reads_single.bed.gz

7.97 MB

smb-clip-dmso-48hr-2_mapped_to_genome_singleAndMulti.bed.gz

12.06 MB

smb-clip-dmso-48hr-2_mapped_to_genome_single.bed.gz

7.47 MB

smb-clip-dmso-48hr-2_mapped_to_genome_skipped.bam

3.96 kB

smb-clip-dmso-48hr-2_mapped_to_genome_single.bedgraph

34.67 MB

iCount summary

smb-clip-dmso-48hr-2_mapped_to_genome_single_summary_subtype.tsv

1016 B

smb-clip-dmso-48hr-2_mapped_to_genome_single_summary_gene.tsv

1.69 MB

smb-clip-dmso-48hr-2_mapped_to_genome_single_summary_type.tsv

439 B

Paraclu

smb-clip-dmso-48hr-2_mapped_to_genome_single_peaks.bed.gz

47.40 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-2.fastq.gz

208.58 MB

smb-clip-dmso-48hr-2_fastqc.zip

499.02 kB

iCount RNA-maps

smb-clip-dmso-48hr-2_mapped_to_genome_single.tar.gz

2.25 MB

PEKA

4mer analysis of smb-clip-dmso-48hr-2_mapped_to_genome.tar.gz

540.98 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-48hr-2_trimmed.fastq.gz

215.68 MB

report.txt

656 B

SmB_CLIP_GSK_24hr_1

STAR

smb-clip-gsk-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

58.68 MB

smb-clip-gsk-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-gsk-24hr-1_trimmed.bam

1.59 GB

smb-clip-gsk-24hr-1_trimmed.bam.bai

4.20 MB

smb-clip-gsk-24hr-1_trimmed_SJ.out.tab

2.61 MB

iCount xlsites

smb-clip-gsk-24hr-1_mapped_to_genome_single.bedgraph

64.89 MB

smb-clip-gsk-24hr-1_mapped_to_genome_reads_single.bed.gz

14.62 MB

smb-clip-gsk-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

21.37 MB

smb-clip-gsk-24hr-1_mapped_to_genome_skipped.bam

4.28 kB

smb-clip-gsk-24hr-1_mapped_to_genome_single.bed.gz

13.74 MB

iCount summary

smb-clip-gsk-24hr-1_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-gsk-24hr-1_mapped_to_genome_single_summary_gene.tsv

1.90 MB

smb-clip-gsk-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

Paraclu

smb-clip-gsk-24hr-1_mapped_to_genome_single_peaks.bed.gz

143.99 kB

PEKA

4mer analysis of smb-clip-gsk-24hr-1_mapped_to_genome.tar.gz

613.36 kB

iCount RNA-maps

smb-clip-gsk-24hr-1_mapped_to_genome_single.tar.gz

3.08 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-gsk-24hr-1.fastq.gz

356.59 MB

smb-clip-gsk-24hr-1_fastqc.zip

492.67 kB

Cutadapt (single-end)

smb-clip-gsk-24hr-1_trimmed.fastq.gz

368.17 MB

fastqc

Directory

report.txt

655 B

SmB_CLIP_LLY_48hr_1

STAR

smb-clip-lly-48hr-1_trimmed.bam.bai

4.17 MB

smb-clip-lly-48hr-1_trimmed_stats.txt

1.82 kB

smb-clip-lly-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

108.70 MB

smb-clip-lly-48hr-1_trimmed_SJ.out.tab

3.67 MB

smb-clip-lly-48hr-1_trimmed.bam

2.89 GB

iCount xlsites

smb-clip-lly-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

41.00 MB

smb-clip-lly-48hr-1_mapped_to_genome_single.bedgraph

124.45 MB

smb-clip-lly-48hr-1_mapped_to_genome_single.bed.gz

26.10 MB

smb-clip-lly-48hr-1_mapped_to_genome_reads_single.bed.gz

27.64 MB

smb-clip-lly-48hr-1_mapped_to_genome_skipped.bam

4.50 kB

iCount summary

smb-clip-lly-48hr-1_mapped_to_genome_single_summary_type.tsv

446 B

smb-clip-lly-48hr-1_mapped_to_genome_single_summary_gene.tsv

2.19 MB

smb-clip-lly-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

smb-clip-lly-48hr-1_mapped_to_genome_single_peaks.bed.gz

372.25 kB

PEKA

4mer analysis of smb-clip-lly-48hr-1_mapped_to_genome.tar.gz

697.86 kB

FASTQ file (CLIP)

smb-clip-lly-48hr-1_fastqc.zip

502.84 kB

fastqc

Directory

smb-clip-lly-48hr-1.fastq.gz

643.31 MB

iCount RNA-maps

smb-clip-lly-48hr-1_mapped_to_genome_single.tar.gz

4.12 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

655 B

smb-clip-lly-48hr-1_trimmed.fastq.gz

665.25 MB

SmB_CLIP_DMSO_48hr_1

STAR

smb-clip-dmso-48hr-1_trimmed_SJ.out.tab

3.24 MB

smb-clip-dmso-48hr-1_trimmed_stats.txt

1.82 kB

smb-clip-dmso-48hr-1_trimmed.bam

2.24 GB

smb-clip-dmso-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

88.72 MB

smb-clip-dmso-48hr-1_trimmed.bam.bai

4.15 MB

iCount xlsites

smb-clip-dmso-48hr-1_mapped_to_genome_skipped.bam

4.63 kB

smb-clip-dmso-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

31.39 MB

smb-clip-dmso-48hr-1_mapped_to_genome_single.bed.gz

20.05 MB

smb-clip-dmso-48hr-1_mapped_to_genome_single.bedgraph

95.14 MB

smb-clip-dmso-48hr-1_mapped_to_genome_reads_single.bed.gz

21.30 MB

iCount summary

smb-clip-dmso-48hr-1_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-dmso-48hr-1_mapped_to_genome_single_summary_gene.tsv

2.11 MB

smb-clip-dmso-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

smb-clip-dmso-48hr-1_mapped_to_genome_single_peaks.bed.gz

251.32 kB

PEKA

4mer analysis of smb-clip-dmso-48hr-1_mapped_to_genome.tar.gz

651.56 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-1_fastqc.zip

485.89 kB

smb-clip-dmso-48hr-1.fastq.gz

516.00 MB

iCount RNA-maps

smb-clip-dmso-48hr-1_mapped_to_genome_single.tar.gz

3.68 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

656 B

smb-clip-dmso-48hr-1_trimmed.fastq.gz

532.62 MB

SmB_CLIP_DMSO_24hr_3

STAR

smb-clip-dmso-24hr-3_trimmed_unmapped.out.mate1.fastq.gz

52.45 MB

smb-clip-dmso-24hr-3_trimmed.bam

1.94 GB

smb-clip-dmso-24hr-3_trimmed.bam.bai

4.59 MB

smb-clip-dmso-24hr-3_trimmed_SJ.out.tab

1.49 MB

smb-clip-dmso-24hr-3_trimmed_stats.txt

1.81 kB

iCount xlsites

smb-clip-dmso-24hr-3_mapped_to_genome_single.bedgraph

27.94 MB

smb-clip-dmso-24hr-3_mapped_to_genome_skipped.bam

3.42 kB

smb-clip-dmso-24hr-3_mapped_to_genome_single.bed.gz

6.08 MB

smb-clip-dmso-24hr-3_mapped_to_genome_reads_single.bed.gz

6.46 MB

smb-clip-dmso-24hr-3_mapped_to_genome_singleAndMulti.bed.gz

9.78 MB

iCount summary

smb-clip-dmso-24hr-3_mapped_to_genome_single_summary_subtype.tsv

1020 B

smb-clip-dmso-24hr-3_mapped_to_genome_single_summary_type.tsv

440 B

smb-clip-dmso-24hr-3_mapped_to_genome_single_summary_gene.tsv

1.66 MB

PEKA

4mer analysis of smb-clip-dmso-24hr-3_mapped_to_genome.tar.gz

506.31 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-24hr-3_fastqc.zip

518.39 kB

smb-clip-dmso-24hr-3.fastq.gz

311.13 MB

iCount RNA-maps

smb-clip-dmso-24hr-3_mapped_to_genome_single.tar.gz

1.80 MB

Paraclu

smb-clip-dmso-24hr-3_mapped_to_genome_single_peaks.bed.gz

29.38 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-24hr-3_trimmed.fastq.gz

325.52 MB

report.txt

656 B

SmB_CLIP_DMSO_48hr_1_unc

STAR

smb-clip-dmso-48hr-1-unc_trimmed_SJ.out.tab

1.51 MB

smb-clip-dmso-48hr-1-unc_trimmed.bam

1.67 GB

smb-clip-dmso-48hr-1-unc_trimmed.bam.bai

3.36 MB

smb-clip-dmso-48hr-1-unc_trimmed_unmapped.out.mate1.fastq.gz

29.92 MB

smb-clip-dmso-48hr-1-unc_trimmed_stats.txt

1.81 kB

iCount xlsites

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single.bedgraph

10.86 MB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_skipped.bam

3.39 kB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_reads_single.bed.gz

2.56 MB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single.bed.gz

2.38 MB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_singleAndMulti.bed.gz

3.90 MB

Paraclu

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single_peaks.bed.gz

20.32 kB

iCount summary

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single_summary_gene.tsv

1.32 MB

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single_summary_subtype.tsv

1007 B

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single_summary_type.tsv

439 B

iCount RNA-maps

smb-clip-dmso-48hr-1-unc_mapped_to_genome_single.tar.gz

1.44 MB

PEKA

4mer analysis of smb-clip-dmso-48hr-1-unc_mapped_to_genome.tar.gz

448.03 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-1-unc.fastq.gz

253.88 MB

smb-clip-dmso-48hr-1-unc_fastqc.zip

544.28 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-48hr-1-unc_trimmed.fastq.gz

266.90 MB

report.txt

660 B

SmB_CLIP_GSK_48hr_2

STAR

smb-clip-gsk-48hr-2_trimmed_stats.txt

1.82 kB

smb-clip-gsk-48hr-2_trimmed.bam.bai

4.34 MB

smb-clip-gsk-48hr-2_trimmed.bam

2.66 GB

smb-clip-gsk-48hr-2_trimmed_unmapped.out.mate1.fastq.gz

103.20 MB

smb-clip-gsk-48hr-2_trimmed_SJ.out.tab

3.59 MB

iCount xlsites

smb-clip-gsk-48hr-2_mapped_to_genome_skipped.bam

5.57 kB

smb-clip-gsk-48hr-2_mapped_to_genome_singleAndMulti.bed.gz

36.33 MB

smb-clip-gsk-48hr-2_mapped_to_genome_single.bed.gz

23.77 MB

smb-clip-gsk-48hr-2_mapped_to_genome_reads_single.bed.gz

25.28 MB

smb-clip-gsk-48hr-2_mapped_to_genome_single.bedgraph

113.22 MB

iCount summary

smb-clip-gsk-48hr-2_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

smb-clip-gsk-48hr-2_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-gsk-48hr-2_mapped_to_genome_single_summary_gene.tsv

2.16 MB

Paraclu

smb-clip-gsk-48hr-2_mapped_to_genome_single_peaks.bed.gz

320.58 kB

PEKA

4mer analysis of smb-clip-gsk-48hr-2_mapped_to_genome.tar.gz

679.78 kB

iCount RNA-maps

smb-clip-gsk-48hr-2_mapped_to_genome_single.tar.gz

3.93 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-gsk-48hr-2.fastq.gz

614.72 MB

smb-clip-gsk-48hr-2_fastqc.zip

484.96 kB

Cutadapt (single-end)

smb-clip-gsk-48hr-2_trimmed.fastq.gz

636.22 MB

fastqc

Directory

report.txt

655 B

SmB_CLIP_LLY_24hr_3

STAR

smb-clip-lly-24hr-3_trimmed_SJ.out.tab

2.30 MB

smb-clip-lly-24hr-3_trimmed_unmapped.out.mate1.fastq.gz

87.04 MB

smb-clip-lly-24hr-3_trimmed.bam

2.84 GB

smb-clip-lly-24hr-3_trimmed_stats.txt

1.82 kB

smb-clip-lly-24hr-3_trimmed.bam.bai

5.16 MB

iCount xlsites

smb-clip-lly-24hr-3_mapped_to_genome_single.bedgraph

59.32 MB

smb-clip-lly-24hr-3_mapped_to_genome_singleAndMulti.bed.gz

20.79 MB

smb-clip-lly-24hr-3_mapped_to_genome_single.bed.gz

12.76 MB

smb-clip-lly-24hr-3_mapped_to_genome_reads_single.bed.gz

13.48 MB

smb-clip-lly-24hr-3_mapped_to_genome_skipped.bam

4.93 kB

iCount summary

smb-clip-lly-24hr-3_mapped_to_genome_single_summary_subtype.tsv

1020 B

smb-clip-lly-24hr-3_mapped_to_genome_single_summary_gene.tsv

1.98 MB

smb-clip-lly-24hr-3_mapped_to_genome_single_summary_type.tsv

442 B

PEKA

4mer analysis of smb-clip-lly-24hr-3_mapped_to_genome.tar.gz

597.50 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-24hr-3.fastq.gz

522.49 MB

smb-clip-lly-24hr-3_fastqc.zip

511.68 kB

Paraclu

smb-clip-lly-24hr-3_mapped_to_genome_single_peaks.bed.gz

74.70 kB

iCount RNA-maps

smb-clip-lly-24hr-3_mapped_to_genome_single.tar.gz

2.21 MB

Cutadapt (single-end)

report.txt

655 B

fastqc

Directory

smb-clip-lly-24hr-3_trimmed.fastq.gz

545.73 MB

SmB_CLIP_LLY_48hr_3

iCount xlsites

smb-clip-lly-48hr-3_mapped_to_genome_single.bed.gz

6.05 MB

smb-clip-lly-48hr-3_mapped_to_genome_singleAndMulti.bed.gz

9.50 MB

smb-clip-lly-48hr-3_mapped_to_genome_skipped.bam

3.79 kB

smb-clip-lly-48hr-3_mapped_to_genome_reads_single.bed.gz

6.45 MB

smb-clip-lly-48hr-3_mapped_to_genome_single.bedgraph

27.69 MB

Paraclu

smb-clip-lly-48hr-3_mapped_to_genome_single_peaks.bed.gz

27.16 kB

iCount summary

smb-clip-lly-48hr-3_mapped_to_genome_single_summary_subtype.tsv

1017 B

smb-clip-lly-48hr-3_mapped_to_genome_single_summary_gene.tsv

1.65 MB

smb-clip-lly-48hr-3_mapped_to_genome_single_summary_type.tsv

438 B

PEKA

4mer analysis of smb-clip-lly-48hr-3_mapped_to_genome.tar.gz

513.50 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-48hr-3.fastq.gz

279.70 MB

smb-clip-lly-48hr-3_fastqc.zip

492.77 kB

iCount RNA-maps

smb-clip-lly-48hr-3_mapped_to_genome_single.tar.gz

1.65 MB

Cutadapt (single-end)

report.txt

655 B

fastqc

Directory

smb-clip-lly-48hr-3_trimmed.fastq.gz

291.67 MB

STAR

smb-clip-lly-48hr-3_trimmed.bam

1.58 GB

smb-clip-lly-48hr-3_trimmed.bam.bai

4.48 MB

smb-clip-lly-48hr-3_trimmed_SJ.out.tab

1.47 MB

smb-clip-lly-48hr-3_trimmed_stats.txt

1.81 kB

smb-clip-lly-48hr-3_trimmed_unmapped.out.mate1.fastq.gz

43.90 MB

SmB_CLIP_GSK_48hr_3

iCount xlsites

smb-clip-gsk-48hr-3_mapped_to_genome_skipped.bam

4.44 kB

smb-clip-gsk-48hr-3_mapped_to_genome_reads_single.bed.gz

11.41 MB

smb-clip-gsk-48hr-3_mapped_to_genome_single.bed.gz

10.71 MB

smb-clip-gsk-48hr-3_mapped_to_genome_single.bedgraph

50.31 MB

smb-clip-gsk-48hr-3_mapped_to_genome_singleAndMulti.bed.gz

14.87 MB

iCount summary

smb-clip-gsk-48hr-3_mapped_to_genome_single_summary_gene.tsv

1.77 MB

smb-clip-gsk-48hr-3_mapped_to_genome_single_summary_type.tsv

440 B

smb-clip-gsk-48hr-3_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

Paraclu

smb-clip-gsk-48hr-3_mapped_to_genome_single_peaks.bed.gz

102.49 kB

FASTQ file (CLIP)

smb-clip-gsk-48hr-3_fastqc.zip

515.31 kB

fastqc

Directory

smb-clip-gsk-48hr-3.fastq.gz

382.97 MB

iCount RNA-maps

smb-clip-gsk-48hr-3_mapped_to_genome_single.tar.gz

2.67 MB

PEKA

4mer analysis of smb-clip-gsk-48hr-3_mapped_to_genome.tar.gz

578.84 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

655 B

smb-clip-gsk-48hr-3_trimmed.fastq.gz

399.68 MB

STAR

smb-clip-gsk-48hr-3_trimmed_unmapped.out.mate1.fastq.gz

67.18 MB

smb-clip-gsk-48hr-3_trimmed_SJ.out.tab

2.21 MB

smb-clip-gsk-48hr-3_trimmed_stats.txt

1.82 kB

smb-clip-gsk-48hr-3_trimmed.bam.bai

4.38 MB

smb-clip-gsk-48hr-3_trimmed.bam

2.10 GB

SmB_CLIP_DMSO_48hr_3

iCount xlsites

smb-clip-dmso-48hr-3_mapped_to_genome_skipped.bam

3.54 kB

smb-clip-dmso-48hr-3_mapped_to_genome_single.bed.gz

7.25 MB

smb-clip-dmso-48hr-3_mapped_to_genome_reads_single.bed.gz

7.70 MB

smb-clip-dmso-48hr-3_mapped_to_genome_singleAndMulti.bed.gz

11.30 MB

smb-clip-dmso-48hr-3_mapped_to_genome_single.bedgraph

33.41 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-3.fastq.gz

411.03 MB

smb-clip-dmso-48hr-3_fastqc.zip

513.88 kB

iCount summary

smb-clip-dmso-48hr-3_mapped_to_genome_single_summary_gene.tsv

1.72 MB

smb-clip-dmso-48hr-3_mapped_to_genome_single_summary_type.tsv

442 B

smb-clip-dmso-48hr-3_mapped_to_genome_single_summary_subtype.tsv

1022 B

iCount RNA-maps

smb-clip-dmso-48hr-3_mapped_to_genome_single.tar.gz

1.83 MB

Paraclu

smb-clip-dmso-48hr-3_mapped_to_genome_single_peaks.bed.gz

36.65 kB

PEKA

4mer analysis of smb-clip-dmso-48hr-3_mapped_to_genome.tar.gz

529.79 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

656 B

smb-clip-dmso-48hr-3_trimmed.fastq.gz

431.14 MB

STAR

smb-clip-dmso-48hr-3_trimmed.bam.bai

4.91 MB

smb-clip-dmso-48hr-3_trimmed_unmapped.out.mate1.fastq.gz

60.81 MB

smb-clip-dmso-48hr-3_trimmed_SJ.out.tab

1.69 MB

smb-clip-dmso-48hr-3_trimmed_stats.txt

1.81 kB

smb-clip-dmso-48hr-3_trimmed.bam

2.56 GB

SmB_CLIP_GSK_24hr_3

STAR

smb-clip-gsk-24hr-3_trimmed_unmapped.out.mate1.fastq.gz

80.77 MB

smb-clip-gsk-24hr-3_trimmed.bam

3.73 GB

smb-clip-gsk-24hr-3_trimmed_SJ.out.tab

2.04 MB

smb-clip-gsk-24hr-3_trimmed.bam.bai

5.49 MB

smb-clip-gsk-24hr-3_trimmed_stats.txt

1.82 kB

iCount xlsites

smb-clip-gsk-24hr-3_mapped_to_genome_reads_single.bed.gz

10.02 MB

smb-clip-gsk-24hr-3_mapped_to_genome_single.bedgraph

43.82 MB

smb-clip-gsk-24hr-3_mapped_to_genome_skipped.bam

4.48 kB

smb-clip-gsk-24hr-3_mapped_to_genome_singleAndMulti.bed.gz

15.06 MB

smb-clip-gsk-24hr-3_mapped_to_genome_single.bed.gz

9.46 MB

FASTQ file (CLIP)

smb-clip-gsk-24hr-3_fastqc.zip

538.08 kB

fastqc

Directory

smb-clip-gsk-24hr-3.fastq.gz

573.16 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-gsk-24hr-3_trimmed.fastq.gz

602.40 MB

report.txt

655 B

iCount summary

smb-clip-gsk-24hr-3_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-gsk-24hr-3_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-gsk-24hr-3_mapped_to_genome_single_summary_gene.tsv

1.82 MB

Paraclu

smb-clip-gsk-24hr-3_mapped_to_genome_single_peaks.bed.gz

51.62 kB

iCount RNA-maps

smb-clip-gsk-24hr-3_mapped_to_genome_single.tar.gz

2.05 MB

PEKA

4mer analysis of smb-clip-gsk-24hr-3_mapped_to_genome.tar.gz

565.82 kB

SmB_CLIP_mock_input_DMSO_48hr_1

iCount xlsites

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_reads_single.bed.gz

5.81 MB

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single.bed.gz

5.47 MB

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

10.98 MB

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single.bedgraph

24.47 MB

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_skipped.bam

3.14 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-dmso-48hr-1.fastq.gz

146.02 MB

smb-clip-mock-input-dmso-48hr-1_fastqc.zip

480.83 kB

iCount summary

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1012 B

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single_summary_type.tsv

436 B

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single_summary_gene.tsv

1.68 MB

iCount RNA-maps

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single.tar.gz

1.01 MB

Paraclu

smb-clip-mock-input-dmso-48hr-1_mapped_to_genome_single_peaks.bed.gz

20.95 kB

PEKA

4mer analysis of smb-clip-mock-input-dmso-48hr-1_mapped_to_genome.tar.gz

525.61 kB

Cutadapt (single-end)

smb-clip-mock-input-dmso-48hr-1_trimmed.fastq.gz

138.47 MB

fastqc

Directory

report.txt

668 B

STAR

smb-clip-mock-input-dmso-48hr-1_trimmed.bam

333.35 MB

smb-clip-mock-input-dmso-48hr-1_trimmed.bam.bai

4.07 MB

smb-clip-mock-input-dmso-48hr-1_trimmed_SJ.out.tab

599.77 kB

smb-clip-mock-input-dmso-48hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

61.04 MB

SmB_CLIP_mock_input_LLY_24hr_1

iCount xlsites

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single.bed.gz

9.71 MB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_reads_single.bed.gz

10.30 MB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single.bedgraph

44.35 MB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_skipped.bam

3.59 kB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

18.50 MB

iCount summary

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single_summary_gene.tsv

1.92 MB

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1023 B

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single_summary_type.tsv

441 B

Paraclu

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single_peaks.bed.gz

42.20 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-lly-24hr-1.fastq.gz

247.41 MB

smb-clip-mock-input-lly-24hr-1_fastqc.zip

478.70 kB

iCount RNA-maps

smb-clip-mock-input-lly-24hr-1_mapped_to_genome_single.tar.gz

1.38 MB

PEKA

4mer analysis of smb-clip-mock-input-lly-24hr-1_mapped_to_genome.tar.gz

562.90 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-lly-24hr-1_trimmed.fastq.gz

242.54 MB

report.txt

666 B

STAR

smb-clip-mock-input-lly-24hr-1_trimmed_SJ.out.tab

1012.36 kB

smb-clip-mock-input-lly-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

112.92 MB

smb-clip-mock-input-lly-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-24hr-1_trimmed.bam

573.08 MB

smb-clip-mock-input-lly-24hr-1_trimmed.bam.bai

3.64 MB

SmB_CLIP_mock_input_GSK_48hr_1

iCount xlsites

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_skipped.bam

4.12 kB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_reads_single.bed.gz

10.58 MB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single.bed.gz

9.95 MB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

17.92 MB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single.bedgraph

45.60 MB

iCount summary

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single_summary_gene.tsv

1.90 MB

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single_summary_type.tsv

442 B

PEKA

4mer analysis of smb-clip-mock-input-gsk-48hr-1_mapped_to_genome.tar.gz

554.77 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-mock-input-gsk-48hr-1.fastq.gz

250.77 MB

smb-clip-mock-input-gsk-48hr-1_fastqc.zip

481.66 kB

iCount RNA-maps

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single.tar.gz

1.45 MB

Paraclu

smb-clip-mock-input-gsk-48hr-1_mapped_to_genome_single_peaks.bed.gz

40.15 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

666 B

smb-clip-mock-input-gsk-48hr-1_trimmed.fastq.gz

244.77 MB

STAR

smb-clip-mock-input-gsk-48hr-1_trimmed.bam

557.07 MB

smb-clip-mock-input-gsk-48hr-1_trimmed_SJ.out.tab

1.01 MB

smb-clip-mock-input-gsk-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

108.22 MB

smb-clip-mock-input-gsk-48hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-48hr-1_trimmed.bam.bai

3.75 MB

SmB_CLIP_mock_input_GSK_24hr_1

iCount xlsites

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single.bedgraph

24.29 MB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_reads_single.bed.gz

5.75 MB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_skipped.bam

3.81 kB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

11.01 MB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single.bed.gz

5.42 MB

iCount summary

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1016 B

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single_summary_gene.tsv

1.70 MB

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single_summary_type.tsv

436 B

Paraclu

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single_peaks.bed.gz

20.35 kB

FASTQ file (CLIP)

smb-clip-mock-input-gsk-24hr-1_fastqc.zip

492.77 kB

fastqc

Directory

smb-clip-mock-input-gsk-24hr-1.fastq.gz

170.86 MB

iCount RNA-maps

smb-clip-mock-input-gsk-24hr-1_mapped_to_genome_single.tar.gz

1.04 MB

PEKA

4mer analysis of smb-clip-mock-input-gsk-24hr-1_mapped_to_genome.tar.gz

503.24 kB

Cutadapt (single-end)

smb-clip-mock-input-gsk-24hr-1_trimmed.fastq.gz

164.53 MB

fastqc

Directory

report.txt

666 B

STAR

smb-clip-mock-input-gsk-24hr-1_trimmed.bam

402.47 MB

smb-clip-mock-input-gsk-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

83.34 MB

smb-clip-mock-input-gsk-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-gsk-24hr-1_trimmed.bam.bai

4.02 MB

smb-clip-mock-input-gsk-24hr-1_trimmed_SJ.out.tab

643.30 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)

fastqc

Directory

demux_nomatch_fastqc.zip

435.30 kB

demux_nomatch.fastq.gz

1.77 GB

SmB_CLIP_GSK_48hr_3group_noGSK3

iCount group

SmB_CLIP_GSK_48hr_3group_noGSK3_grouped_cdna.bed.gz

43.61 MB

SmB_CLIP_GSK_48hr_3group_noGSK3_grouped_reads.bed.gz

46.06 MB

SmB_CLIP_GSK_48hr_3group_noGSK3_grouped_cdna.bedgraph

208.86 MB

SmB_CLIP_mock_input_LLY_48hr_1

iCount xlsites

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single.bed.gz

3.38 MB

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_skipped.bam

3.15 kB

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_reads_single.bed.gz

3.58 MB

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_singleAndMulti.bed.gz

7.26 MB

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single.bedgraph

14.83 MB

iCount RNA-maps

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single.tar.gz

864.92 kB

PEKA

4mer analysis of smb-clip-mock-input-lly-48hr-1_mapped_to_genome.tar.gz

455.76 kB

FASTQ file (CLIP)

smb-clip-mock-input-lly-48hr-1.fastq.gz

171.31 MB

smb-clip-mock-input-lly-48hr-1_fastqc.zip

494.38 kB

fastqc

Directory

iCount summary

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single_summary_type.tsv

430 B

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single_summary_subtype.tsv

1010 B

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single_summary_gene.tsv

1.55 MB

Paraclu

smb-clip-mock-input-lly-48hr-1_mapped_to_genome_single_peaks.bed.gz

14.09 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-mock-input-lly-48hr-1_trimmed.fastq.gz

165.41 MB

report.txt

667 B

STAR

smb-clip-mock-input-lly-48hr-1_trimmed.bam.bai

4.10 MB

smb-clip-mock-input-lly-48hr-1_trimmed_SJ.out.tab

440.92 kB

smb-clip-mock-input-lly-48hr-1_trimmed.bam

350.81 MB

smb-clip-mock-input-lly-48hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-lly-48hr-1_trimmed_unmapped.out.mate1.fastq.gz

110.45 MB

SmB_CLIP_DMSO_48hr_2_unc

iCount xlsites

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single.bedgraph

2.40 MB

smb-clip-dmso-48hr-2-unc_mapped_to_genome_reads_single.bed.gz

626.80 kB

smb-clip-dmso-48hr-2-unc_mapped_to_genome_skipped.bam

3.13 kB

smb-clip-dmso-48hr-2-unc_mapped_to_genome_singleAndMulti.bed.gz

1.20 MB

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single.bed.gz

584.65 kB

Paraclu

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single_peaks.bed.gz

2.84 kB

FASTQ file (CLIP)

smb-clip-dmso-48hr-2-unc_fastqc.zip

574.80 kB

fastqc

Directory

smb-clip-dmso-48hr-2-unc.fastq.gz

73.57 MB

iCount summary

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single_summary_type.tsv

427 B

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single_summary_subtype.tsv

987 B

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single_summary_gene.tsv

949.02 kB

iCount RNA-maps

smb-clip-dmso-48hr-2-unc_mapped_to_genome_single.tar.gz

659.68 kB

PEKA

4mer analysis of smb-clip-dmso-48hr-2-unc_mapped_to_genome.tar.gz

263.32 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

659 B

smb-clip-dmso-48hr-2-unc_trimmed.fastq.gz

77.62 MB

STAR

smb-clip-dmso-48hr-2-unc_trimmed_stats.txt

1.80 kB

smb-clip-dmso-48hr-2-unc_trimmed.bam.bai

2.54 MB

smb-clip-dmso-48hr-2-unc_trimmed.bam

564.96 MB

smb-clip-dmso-48hr-2-unc_trimmed_SJ.out.tab

409.25 kB

smb-clip-dmso-48hr-2-unc_trimmed_unmapped.out.mate1.fastq.gz

8.42 MB

SmB_CLIP_mock_input_DMSO_24hr_1

iCount xlsites

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single.bedgraph

68.25 MB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

28.28 MB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single.bed.gz

14.81 MB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_reads_single.bed.gz

15.63 MB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_skipped.bam

3.76 kB

iCount summary

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single_summary_type.tsv

443 B

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single_summary_gene.tsv

2.10 MB

iCount RNA-maps

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single.tar.gz

1.76 MB

FASTQ file (CLIP)

smb-clip-mock-input-dmso-24hr-1.fastq.gz

308.03 MB

fastqc

Directory

smb-clip-mock-input-dmso-24hr-1_fastqc.zip

468.79 kB

Paraclu

smb-clip-mock-input-dmso-24hr-1_mapped_to_genome_single_peaks.bed.gz

80.13 kB

PEKA

4mer analysis of smb-clip-mock-input-dmso-24hr-1_mapped_to_genome.tar.gz

625.25 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

667 B

smb-clip-mock-input-dmso-24hr-1_trimmed.fastq.gz

303.50 MB

STAR

smb-clip-mock-input-dmso-24hr-1_trimmed.bam

782.22 MB

smb-clip-mock-input-dmso-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-mock-input-dmso-24hr-1_trimmed.bam.bai

3.31 MB

smb-clip-mock-input-dmso-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

113.13 MB

smb-clip-mock-input-dmso-24hr-1_trimmed_SJ.out.tab

1.45 MB

SmB_CLIP_GSK_24hr_2

STAR

smb-clip-gsk-24hr-2_trimmed.bam.bai

4.79 MB

smb-clip-gsk-24hr-2_trimmed_SJ.out.tab

2.07 MB

smb-clip-gsk-24hr-2_trimmed_stats.txt

1.82 kB

smb-clip-gsk-24hr-2_trimmed_unmapped.out.mate1.fastq.gz

70.23 MB

smb-clip-gsk-24hr-2_trimmed.bam

2.17 GB

iCount xlsites

smb-clip-gsk-24hr-2_mapped_to_genome_singleAndMulti.bed.gz

13.94 MB

smb-clip-gsk-24hr-2_mapped_to_genome_skipped.bam

3.81 kB

smb-clip-gsk-24hr-2_mapped_to_genome_single.bedgraph

42.63 MB

smb-clip-gsk-24hr-2_mapped_to_genome_single.bed.gz

9.17 MB

smb-clip-gsk-24hr-2_mapped_to_genome_reads_single.bed.gz

9.74 MB

iCount summary

smb-clip-gsk-24hr-2_mapped_to_genome_single_summary_subtype.tsv

1020 B

smb-clip-gsk-24hr-2_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-gsk-24hr-2_mapped_to_genome_single_summary_gene.tsv

1.79 MB

Paraclu

smb-clip-gsk-24hr-2_mapped_to_genome_single_peaks.bed.gz

63.89 kB

PEKA

4mer analysis of smb-clip-gsk-24hr-2_mapped_to_genome.tar.gz

555.82 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-gsk-24hr-2.fastq.gz

396.26 MB

smb-clip-gsk-24hr-2_fastqc.zip

496.33 kB

iCount RNA-maps

smb-clip-gsk-24hr-2_mapped_to_genome_single.tar.gz

2.27 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-gsk-24hr-2_trimmed.fastq.gz

413.13 MB

report.txt

655 B

SmB_CLIP_LLY_48hr_2

STAR

smb-clip-lly-48hr-2_trimmed.bam

1.09 GB

smb-clip-lly-48hr-2_trimmed_SJ.out.tab

2.01 MB

smb-clip-lly-48hr-2_trimmed.bam.bai

4.23 MB

smb-clip-lly-48hr-2_trimmed_unmapped.out.mate1.fastq.gz

41.76 MB

smb-clip-lly-48hr-2_trimmed_stats.txt

1.81 kB

iCount xlsites

smb-clip-lly-48hr-2_mapped_to_genome_singleAndMulti.bed.gz

13.49 MB

smb-clip-lly-48hr-2_mapped_to_genome_skipped.bam

3.77 kB

smb-clip-lly-48hr-2_mapped_to_genome_single.bed.gz

8.39 MB

smb-clip-lly-48hr-2_mapped_to_genome_reads_single.bed.gz

8.95 MB

smb-clip-lly-48hr-2_mapped_to_genome_single.bedgraph

39.13 MB

iCount summary

smb-clip-lly-48hr-2_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-lly-48hr-2_mapped_to_genome_single_summary_gene.tsv

1.75 MB

smb-clip-lly-48hr-2_mapped_to_genome_single_summary_subtype.tsv

1023 B

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-48hr-2.fastq.gz

241.12 MB

smb-clip-lly-48hr-2_fastqc.zip

488.60 kB

Paraclu

smb-clip-lly-48hr-2_mapped_to_genome_single_peaks.bed.gz

66.12 kB

iCount RNA-maps

smb-clip-lly-48hr-2_mapped_to_genome_single.tar.gz

2.40 MB

PEKA

4mer analysis of smb-clip-lly-48hr-2_mapped_to_genome.tar.gz

554.65 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-lly-48hr-2_trimmed.fastq.gz

248.87 MB

report.txt

655 B

SmB_CLIP_LLY_24hr_2

STAR

smb-clip-lly-24hr-2_trimmed.bam

1.69 GB

smb-clip-lly-24hr-2_trimmed_unmapped.out.mate1.fastq.gz

57.73 MB

smb-clip-lly-24hr-2_trimmed_stats.txt

1.81 kB

smb-clip-lly-24hr-2_trimmed.bam.bai

4.44 MB

smb-clip-lly-24hr-2_trimmed_SJ.out.tab

2.11 MB

iCount summary

smb-clip-lly-24hr-2_mapped_to_genome_single_summary_type.tsv

441 B

smb-clip-lly-24hr-2_mapped_to_genome_single_summary_subtype.tsv

1023 B

smb-clip-lly-24hr-2_mapped_to_genome_single_summary_gene.tsv

1.91 MB

Paraclu

smb-clip-lly-24hr-2_mapped_to_genome_single_peaks.bed.gz

77.21 kB

PEKA

4mer analysis of smb-clip-lly-24hr-2_mapped_to_genome.tar.gz

576.31 kB

iCount RNA-maps

smb-clip-lly-24hr-2_mapped_to_genome_single.tar.gz

2.46 MB

FASTQ file (CLIP)

smb-clip-lly-24hr-2.fastq.gz

360.04 MB

fastqc

Directory

smb-clip-lly-24hr-2_fastqc.zip

475.89 kB

iCount xlsites

smb-clip-lly-24hr-2_mapped_to_genome_single.bedgraph

55.50 MB

smb-clip-lly-24hr-2_mapped_to_genome_singleAndMulti.bed.gz

19.67 MB

smb-clip-lly-24hr-2_mapped_to_genome_single.bed.gz

11.91 MB

smb-clip-lly-24hr-2_mapped_to_genome_reads_single.bed.gz

12.69 MB

smb-clip-lly-24hr-2_mapped_to_genome_skipped.bam

4.29 kB

Cutadapt (single-end)

smb-clip-lly-24hr-2_trimmed.fastq.gz

372.05 MB

report.txt

655 B

fastqc

Directory

SmB_CLIP_DMSO_24hr_2

STAR

smb-clip-dmso-24hr-2_trimmed_stats.txt

1.81 kB

smb-clip-dmso-24hr-2_trimmed.bam.bai

4.39 MB

smb-clip-dmso-24hr-2_trimmed_SJ.out.tab

2.37 MB

smb-clip-dmso-24hr-2_trimmed.bam

1.91 GB

smb-clip-dmso-24hr-2_trimmed_unmapped.out.mate1.fastq.gz

64.43 MB

iCount xlsites

smb-clip-dmso-24hr-2_mapped_to_genome_skipped.bam

3.66 kB

smb-clip-dmso-24hr-2_mapped_to_genome_singleAndMulti.bed.gz

21.75 MB

smb-clip-dmso-24hr-2_mapped_to_genome_single.bedgraph

63.04 MB

smb-clip-dmso-24hr-2_mapped_to_genome_reads_single.bed.gz

14.35 MB

smb-clip-dmso-24hr-2_mapped_to_genome_single.bed.gz

13.48 MB

iCount RNA-maps

smb-clip-dmso-24hr-2_mapped_to_genome_single.tar.gz

2.74 MB

iCount summary

smb-clip-dmso-24hr-2_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-dmso-24hr-2_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-dmso-24hr-2_mapped_to_genome_single_summary_gene.tsv

1.96 MB

Paraclu

smb-clip-dmso-24hr-2_mapped_to_genome_single_peaks.bed.gz

105.81 kB

FASTQ file (CLIP)

smb-clip-dmso-24hr-2.fastq.gz

400.84 MB

smb-clip-dmso-24hr-2_fastqc.zip

485.61 kB

fastqc

Directory

PEKA

4mer analysis of smb-clip-dmso-24hr-2_mapped_to_genome.tar.gz

609.72 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

656 B

smb-clip-dmso-24hr-2_trimmed.fastq.gz

414.27 MB

SmB_CLIP_LLY_24hr_1

STAR

smb-clip-lly-24hr-1_trimmed.bam

2.95 GB

smb-clip-lly-24hr-1_trimmed_stats.txt

1.82 kB

smb-clip-lly-24hr-1_trimmed.bam.bai

4.66 MB

smb-clip-lly-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

98.62 MB

smb-clip-lly-24hr-1_trimmed_SJ.out.tab

2.96 MB

iCount xlsites

smb-clip-lly-24hr-1_mapped_to_genome_single.bed.gz

20.85 MB

smb-clip-lly-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

33.92 MB

smb-clip-lly-24hr-1_mapped_to_genome_reads_single.bed.gz

22.16 MB

smb-clip-lly-24hr-1_mapped_to_genome_single.bedgraph

98.02 MB

smb-clip-lly-24hr-1_mapped_to_genome_skipped.bam

4.76 kB

iCount summary

smb-clip-lly-24hr-1_mapped_to_genome_single_summary_gene.tsv

2.18 MB

smb-clip-lly-24hr-1_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-lly-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

smb-clip-lly-24hr-1_mapped_to_genome_single_peaks.bed.gz

165.87 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-24hr-1.fastq.gz

631.07 MB

smb-clip-lly-24hr-1_fastqc.zip

470.78 kB

iCount RNA-maps

smb-clip-lly-24hr-1_mapped_to_genome_single.tar.gz

3.05 MB

PEKA

4mer analysis of smb-clip-lly-24hr-1_mapped_to_genome.tar.gz

658.62 kB

Cutadapt (single-end)

report.txt

655 B

fastqc

Directory

smb-clip-lly-24hr-1_trimmed.fastq.gz

653.39 MB

SmB_CLIP_DMSO_24hr_1

STAR

smb-clip-dmso-24hr-1_trimmed_unmapped.out.mate1.fastq.gz

67.43 MB

smb-clip-dmso-24hr-1_trimmed.bam

2.14 GB

smb-clip-dmso-24hr-1_trimmed_stats.txt

1.81 kB

smb-clip-dmso-24hr-1_trimmed.bam.bai

4.49 MB

smb-clip-dmso-24hr-1_trimmed_SJ.out.tab

2.22 MB

iCount xlsites

smb-clip-dmso-24hr-1_mapped_to_genome_single.bedgraph

68.06 MB

smb-clip-dmso-24hr-1_mapped_to_genome_reads_single.bed.gz

15.53 MB

smb-clip-dmso-24hr-1_mapped_to_genome_skipped.bam

4.22 kB

smb-clip-dmso-24hr-1_mapped_to_genome_single.bed.gz

14.60 MB

smb-clip-dmso-24hr-1_mapped_to_genome_singleAndMulti.bed.gz

23.99 MB

iCount RNA-maps

smb-clip-dmso-24hr-1_mapped_to_genome_single.tar.gz

2.48 MB

PEKA

4mer analysis of smb-clip-dmso-24hr-1_mapped_to_genome.tar.gz

618.83 kB

iCount summary

smb-clip-dmso-24hr-1_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-dmso-24hr-1_mapped_to_genome_single_summary_type.tsv

444 B

smb-clip-dmso-24hr-1_mapped_to_genome_single_summary_gene.tsv

2.00 MB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-24hr-1.fastq.gz

450.04 MB

smb-clip-dmso-24hr-1_fastqc.zip

483.97 kB

Paraclu

smb-clip-dmso-24hr-1_mapped_to_genome_single_peaks.bed.gz

87.39 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

656 B

smb-clip-dmso-24hr-1_trimmed.fastq.gz

463.29 MB

SmB_CLIP_DMSO_48hr_4_20201021_JU

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-48hr-4-20201021-ju.fastq.gz

194.79 MB

smb-clip-dmso-48hr-4-20201021-ju_fastqc.zip

564.67 kB

STAR

smb-clip-dmso-48hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-dmso-48hr-4-20201021-ju_trimmed.bam

1.04 GB

smb-clip-dmso-48hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

31.03 MB

smb-clip-dmso-48hr-4-20201021-ju_trimmed_SJ.out.tab

1.59 MB

smb-clip-dmso-48hr-4-20201021-ju_trimmed.bam.bai

4.03 MB

Cutadapt (single-end)

report.txt

668 B

fastqc

Directory

smb-clip-dmso-48hr-4-20201021-ju_trimmed.fastq.gz

202.04 MB

iCount xlsites

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single.bedgraph

38.31 MB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single.bed.gz

8.20 MB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

8.61 MB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.27 kB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

12.20 MB

iCount summary

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

624 B

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.35 MB

iCount RNA-maps

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single.tar.gz

2.28 MB

Paraclu

smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

62.59 kB

PEKA

4mer analysis of smb-clip-dmso-48hr-4-20201021-ju_mapped_to_genome.tar.gz

565.28 kB

SmB_CLIP_DMSO_24hr_grouped

Paraclu

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_peaks.bed.gz

340.34 kB

iCount RNA-maps

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna.tar.gz

3.85 MB

iCount group

SmB_CLIP_DMSO_24hr_grouped_grouped_reads.bed.gz

34.08 MB

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna.bedgraph

152.36 MB

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna.bed.gz

32.15 MB

iCount summary

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_summary_gene.tsv

2.37 MB

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_summary_type.tsv

452 B

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_summary_subtype.tsv

1.02 kB

iCount annotate

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_annotated.bed.gz

40.00 MB

SmB_CLIP_DMSO_24hr_grouped_grouped_cdna_annotated.bedgraph

152.36 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_24hr_grouped_grouped_cdna.tar.gz

704.07 kB

SmB_CLIP_LLY_24hr_grouped

iCount RNA-maps

SmB_CLIP_LLY_24hr_grouped_grouped_cdna.tar.gz

4.19 MB

Paraclu

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_peaks.bed.gz

463.42 kB

iCount group

SmB_CLIP_LLY_24hr_grouped_grouped_cdna.bedgraph

202.30 MB

SmB_CLIP_LLY_24hr_grouped_grouped_cdna.bed.gz

42.57 MB

SmB_CLIP_LLY_24hr_grouped_grouped_reads.bed.gz

45.00 MB

iCount summary

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_summary_gene.tsv

2.52 MB

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_summary_type.tsv

450 B

iCount annotate

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_annotated.bedgraph

202.30 MB

SmB_CLIP_LLY_24hr_grouped_grouped_cdna_annotated.bed.gz

52.24 MB

PEKA

4mer analysis of SmB_CLIP_LLY_24hr_grouped_grouped_cdna.tar.gz

747.18 kB

SmB_CLIP_GSK_24hr_grouped

iCount annotate

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_annotated.bedgraph

144.41 MB

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_annotated.bed.gz

38.07 MB

iCount RNA-maps

SmB_CLIP_GSK_24hr_grouped_grouped_cdna.tar.gz

4.07 MB

PEKA

4mer analysis of SmB_CLIP_GSK_24hr_grouped_grouped_cdna.tar.gz

697.18 kB

iCount group

SmB_CLIP_GSK_24hr_grouped_grouped_cdna.bed.gz

30.36 MB

SmB_CLIP_GSK_24hr_grouped_grouped_cdna.bedgraph

144.41 MB

SmB_CLIP_GSK_24hr_grouped_grouped_reads.bed.gz

32.11 MB

iCount summary

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_summary_type.tsv

443 B

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_summary_gene.tsv

2.29 MB

Paraclu

SmB_CLIP_GSK_24hr_grouped_grouped_cdna_peaks.bed.gz

374.55 kB

SmB_CLIP_DMSO_48hr_grouped

iCount peaks

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_peaks.bed.gz

3.30 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_peaks.bedgraph

10.42 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_scores.tsv.gz

117.03 MB

iCount summary

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_summary_gene.tsv

2.35 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_summary_type.tsv

445 B

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_summary_subtype.tsv

1.01 kB

iCount RNA-maps

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna.tar.gz

4.41 MB

iCount group

SmB_CLIP_DMSO_48hr_grouped_grouped_reads.bed.gz

34.65 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna.bedgraph

155.96 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna.bed.gz

32.72 MB

Paraclu

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_peaks.bed.gz

443.36 kB

iCount annotate

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_annotated.bedgraph

155.96 MB

SmB_CLIP_DMSO_48hr_grouped_grouped_cdna_annotated.bed.gz

40.99 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hr_grouped_grouped_cdna.tar.gz

732.08 kB

SmB_CLIP_LLY_48hr_grouped

iCount peaks

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_peaks.bedgraph

15.02 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_scores.tsv.gz

138.49 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_peaks.bed.gz

4.56 MB

Paraclu

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_peaks.bed.gz

559.83 kB

iCount annotate

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_annotated.bed.gz

47.56 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_annotated.bedgraph

182.67 MB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_grouped_grouped_cdna.tar.gz

739.61 kB

iCount group

SmB_CLIP_LLY_48hr_grouped_grouped_cdna.bedgraph

182.67 MB

SmB_CLIP_LLY_48hr_grouped_grouped_reads.bed.gz

40.40 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna.bed.gz

38.21 MB

iCount summary

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_summary_type.tsv

448 B

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_summary_gene.tsv

2.39 MB

SmB_CLIP_LLY_48hr_grouped_grouped_cdna_summary_subtype.tsv

1.02 kB

iCount RNA-maps

SmB_CLIP_LLY_48hr_grouped_grouped_cdna.tar.gz

4.77 MB

SmB_CLIP_GSK_48hr_grouped

iCount annotate

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_annotated.bedgraph

215.30 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_annotated.bed.gz

55.58 MB

iCount RNA-maps

SmB_CLIP_GSK_48hr_grouped_grouped_cdna.tar.gz

5.18 MB

iCount group

SmB_CLIP_GSK_48hr_grouped_grouped_reads.bed.gz

47.54 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna.bedgraph

215.30 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna.bed.gz

44.92 MB

iCount summary

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_summary_gene.tsv

2.44 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_summary_type.tsv

448 B

Paraclu

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_peaks.bed.gz

687.91 kB

PEKA

4mer analysis of SmB_CLIP_GSK_48hr_grouped_grouped_cdna.tar.gz

758.11 kB

iCount peaks

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_scores.tsv.gz

163.51 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_peaks.bed.gz

5.69 MB

SmB_CLIP_GSK_48hr_grouped_grouped_cdna_peaks.bedgraph

19.04 MB

SmB_CLIP_DMSO_24hr_5_20201021_JU

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-24hr-5-20201021-ju.fastq.gz

114.05 MB

smb-clip-dmso-24hr-5-20201021-ju_fastqc.zip

532.69 kB

STAR

smb-clip-dmso-24hr-5-20201021-ju_trimmed.bam.bai

4.16 MB

smb-clip-dmso-24hr-5-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

17.46 MB

smb-clip-dmso-24hr-5-20201021-ju_trimmed_SJ.out.tab

875.24 kB

smb-clip-dmso-24hr-5-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-dmso-24hr-5-20201021-ju_trimmed.bam

606.28 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-24hr-5-20201021-ju_trimmed.fastq.gz

117.68 MB

report.txt

668 B

Paraclu

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single_peaks.bed.gz

13.83 kB

iCount xlsites

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_skipped.bam

3.60 kB

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_reads_single.bed.gz

4.68 MB

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single.bed.gz

4.44 MB

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

7.60 MB

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single.bedgraph

20.14 MB

iCount summary

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single_summary_type.tsv

621 B

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1010 B

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.19 MB

iCount RNA-maps

smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome_single.tar.gz

1.35 MB

PEKA

4mer analysis of smb-clip-dmso-24hr-5-20201021-ju_mapped_to_genome.tar.gz

485.46 kB

SmB_CLIP_GSK_24hr_4_20201021_JU

PEKA

4mer analysis of smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome.tar.gz

486.27 kB

FASTQ file (CLIP)

smb-clip-gsk-24hr-4-20201021-ju.fastq.gz

129.84 MB

fastqc

Directory

smb-clip-gsk-24hr-4-20201021-ju_fastqc.zip

556.99 kB

STAR

smb-clip-gsk-24hr-4-20201021-ju_trimmed.bam.bai

3.99 MB

smb-clip-gsk-24hr-4-20201021-ju_trimmed_SJ.out.tab

1.08 MB

smb-clip-gsk-24hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-gsk-24hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

20.33 MB

smb-clip-gsk-24hr-4-20201021-ju_trimmed.bam

732.01 MB

Cutadapt (single-end)

report.txt

667 B

fastqc

Directory

smb-clip-gsk-24hr-4-20201021-ju_trimmed.fastq.gz

134.68 MB

iCount xlsites

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single.bedgraph

23.11 MB

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

7.98 MB

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

5.32 MB

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single.bed.gz

5.04 MB

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.46 kB

iCount summary

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

616 B

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1008 B

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.21 MB

iCount RNA-maps

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single.tar.gz

1.73 MB

Paraclu

smb-clip-gsk-24hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

20.55 kB

SmB_CLIP_DMSO_24hr_4_20201021_JU

FASTQ file (CLIP)

fastqc

Directory

smb-clip-dmso-24hr-4-20201021-ju_fastqc.zip

592.01 kB

smb-clip-dmso-24hr-4-20201021-ju.fastq.gz

172.57 MB

STAR

smb-clip-dmso-24hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-dmso-24hr-4-20201021-ju_trimmed.bam

1012.81 MB

smb-clip-dmso-24hr-4-20201021-ju_trimmed.bam.bai

4.07 MB

smb-clip-dmso-24hr-4-20201021-ju_trimmed_SJ.out.tab

1.40 MB

smb-clip-dmso-24hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

27.76 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-dmso-24hr-4-20201021-ju_trimmed.fastq.gz

179.69 MB

report.txt

668 B

iCount xlsites

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single.bed.gz

6.17 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

9.63 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

6.48 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single.bedgraph

28.57 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.47 kB

iCount RNA-maps

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single.tar.gz

1.98 MB

Paraclu

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

37.86 kB

PEKA

4mer analysis of smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome.tar.gz

521.65 kB

iCount summary

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1019 B

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.26 MB

smb-clip-dmso-24hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

621 B

SmB_CLIP_GSK_48hr_4_20201021_JU

iCount xlsites

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

13.00 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single.bed.gz

9.15 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

9.62 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single.bedgraph

42.75 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.61 kB

FASTQ file (CLIP)

smb-clip-gsk-48hr-4-20201021-ju_fastqc.zip

525.81 kB

fastqc

Directory

smb-clip-gsk-48hr-4-20201021-ju.fastq.gz

224.00 MB

STAR

smb-clip-gsk-48hr-4-20201021-ju_trimmed.bam

1.09 GB

smb-clip-gsk-48hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

35.21 MB

smb-clip-gsk-48hr-4-20201021-ju_trimmed_SJ.out.tab

1.91 MB

smb-clip-gsk-48hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-gsk-48hr-4-20201021-ju_trimmed.bam.bai

3.95 MB

Cutadapt (single-end)

report.txt

667 B

fastqc

Directory

smb-clip-gsk-48hr-4-20201021-ju_trimmed.fastq.gz

232.85 MB

iCount summary

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.46 MB

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1021 B

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

627 B

iCount RNA-maps

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single.tar.gz

2.38 MB

Paraclu

smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

67.09 kB

PEKA

4mer analysis of smb-clip-gsk-48hr-4-20201021-ju_mapped_to_genome.tar.gz

558.11 kB

SmB_CLIP_LLY_48hr_4_20201021_JU

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-48hr-4-20201021-ju.fastq.gz

181.52 MB

smb-clip-lly-48hr-4-20201021-ju_fastqc.zip

516.10 kB

iCount xlsites

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

7.29 MB

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

10.43 MB

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single.bed.gz

6.94 MB

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single.bedgraph

32.08 MB

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.82 kB

iCount RNA-maps

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single.tar.gz

1.96 MB

STAR

smb-clip-lly-48hr-4-20201021-ju_trimmed.bam

958.07 MB

smb-clip-lly-48hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

26.64 MB

smb-clip-lly-48hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-lly-48hr-4-20201021-ju_trimmed_SJ.out.tab

1.60 MB

smb-clip-lly-48hr-4-20201021-ju_trimmed.bam.bai

4.01 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

667 B

smb-clip-lly-48hr-4-20201021-ju_trimmed.fastq.gz

188.57 MB

iCount summary

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

625 B

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1022 B

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.40 MB

Paraclu

smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

39.65 kB

PEKA

4mer analysis of smb-clip-lly-48hr-4-20201021-ju_mapped_to_genome.tar.gz

530.95 kB

SmB_CLIP_GSK_24hr_5_20201021_JU

PEKA

4mer analysis of smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome.tar.gz

580.31 kB

FASTQ file (CLIP)

smb-clip-gsk-24hr-5-20201021-ju.fastq.gz

222.21 MB

smb-clip-gsk-24hr-5-20201021-ju_fastqc.zip

518.81 kB

fastqc

Directory

STAR

smb-clip-gsk-24hr-5-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

34.54 MB

smb-clip-gsk-24hr-5-20201021-ju_trimmed.bam

1.08 GB

smb-clip-gsk-24hr-5-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-gsk-24hr-5-20201021-ju_trimmed_SJ.out.tab

1.91 MB

smb-clip-gsk-24hr-5-20201021-ju_trimmed.bam.bai

4.07 MB

Cutadapt (single-end)

fastqc

Directory

smb-clip-gsk-24hr-5-20201021-ju_trimmed.fastq.gz

230.37 MB

report.txt

667 B

iCount xlsites

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single.bedgraph

46.02 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single.bed.gz

9.85 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_reads_single.bed.gz

10.34 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

14.49 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_skipped.bam

4.22 kB

Paraclu

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single_peaks.bed.gz

72.93 kB

iCount summary

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1022 B

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single_summary_type.tsv

629 B

iCount RNA-maps

smb-clip-gsk-24hr-5-20201021-ju_mapped_to_genome_single.tar.gz

2.43 MB

SmB_CLIP_LLY_24hr_5_20201021_JU

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-24hr-5-20201021-ju_fastqc.zip

540.24 kB

smb-clip-lly-24hr-5-20201021-ju.fastq.gz

112.59 MB

Paraclu

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single_peaks.bed.gz

14.14 kB

PEKA

4mer analysis of smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome.tar.gz

472.84 kB

STAR

smb-clip-lly-24hr-5-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

16.82 MB

smb-clip-lly-24hr-5-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-lly-24hr-5-20201021-ju_trimmed_SJ.out.tab

930.35 kB

smb-clip-lly-24hr-5-20201021-ju_trimmed.bam.bai

4.07 MB

smb-clip-lly-24hr-5-20201021-ju_trimmed.bam

617.68 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

667 B

smb-clip-lly-24hr-5-20201021-ju_trimmed.fastq.gz

116.38 MB

iCount xlsites

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

7.03 MB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_reads_single.bed.gz

4.43 MB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_skipped.bam

3.25 kB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single.bedgraph

19.08 MB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single.bed.gz

4.20 MB

iCount RNA-maps

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single.tar.gz

1.39 MB

iCount summary

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.16 MB

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single_summary_type.tsv

621 B

smb-clip-lly-24hr-5-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1008 B

SmB_CLIP_LLY_24hr_4_20201021_JU

PEKA

4mer analysis of smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome.tar.gz

447.09 kB

FASTQ file (CLIP)

fastqc

Directory

smb-clip-lly-24hr-4-20201021-ju.fastq.gz

88.58 MB

smb-clip-lly-24hr-4-20201021-ju_fastqc.zip

567.62 kB

STAR

smb-clip-lly-24hr-4-20201021-ju_trimmed_unmapped.out.mate1.fastq.gz

12.71 MB

smb-clip-lly-24hr-4-20201021-ju_trimmed.bam

518.07 MB

smb-clip-lly-24hr-4-20201021-ju_trimmed.bam.bai

3.84 MB

smb-clip-lly-24hr-4-20201021-ju_trimmed_stats.txt

1.81 kB

smb-clip-lly-24hr-4-20201021-ju_trimmed_SJ.out.tab

756.70 kB

Cutadapt (single-end)

fastqc

Directory

smb-clip-lly-24hr-4-20201021-ju_trimmed.fastq.gz

91.68 MB

report.txt

666 B

iCount xlsites

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single.bed.gz

3.17 MB

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_reads_single.bed.gz

3.34 MB

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_skipped.bam

3.41 kB

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single.bedgraph

14.34 MB

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_singleAndMulti.bed.gz

5.36 MB

iCount RNA-maps

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single.tar.gz

1.27 MB

iCount summary

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single_summary_subtype.tsv

1009 B

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single_summary_type.tsv

616 B

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single_summary_gene.tsv

2.01 MB

Paraclu

smb-clip-lly-24hr-4-20201021-ju_mapped_to_genome_single_peaks.bed.gz

9.41 kB

SmB_CLIP_GSK_48hr_4group_2

iCount group

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna.bed.gz

52.19 MB

SmB_CLIP_GSK_48hr_4group_2_grouped_reads.bed.gz

55.07 MB

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna.bedgraph

250.44 MB

Paraclu

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_peaks.bed.gz

808.54 kB

iCount RNA-maps

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna.tar.gz

5.51 MB

PEKA

4mer analysis of SmB_CLIP_GSK_48hr_4group_2_grouped_cdna.tar.gz

764.67 kB

iCount summary

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_summary_type.tsv

452 B

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_summary_gene.tsv

3.49 MB

iCount annotate

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_annotated.bed.gz

64.17 MB

SmB_CLIP_GSK_48hr_4group_2_grouped_cdna_annotated.bedgraph

250.44 MB

SmB_CLIP_LLY_48hr_4group_2

iCount group

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna.bed.gz

43.82 MB

SmB_CLIP_LLY_48hr_4group_2_grouped_reads.bed.gz

46.23 MB

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna.bedgraph

209.71 MB

iCount RNA-maps

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna.tar.gz

5.03 MB

Paraclu

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_peaks.bed.gz

646.39 kB

iCount summary

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_summary_type.tsv

449 B

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_summary_gene.tsv

3.42 MB

iCount annotate

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_annotated.bed.gz

54.20 MB

SmB_CLIP_LLY_48hr_4group_2_grouped_cdna_annotated.bedgraph

209.71 MB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_4group_2_grouped_cdna.tar.gz

762.67 kB

SmB_CLIP_DMSO_48hr_4group_2

iCount group

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna.bed.gz

39.52 MB

SmB_CLIP_DMSO_48hr_4group_2_grouped_reads.bed.gz

41.70 MB

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna.bedgraph

188.94 MB

iCount RNA-maps

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna.tar.gz

4.79 MB

iCount summary

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_summary_type.tsv

453 B

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_summary_subtype.tsv

1.02 kB

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_summary_gene.tsv

3.34 MB

Paraclu

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_peaks.bed.gz

560.74 kB

iCount annotate

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_annotated.bed.gz

49.09 MB

SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna_annotated.bedgraph

188.94 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hr_4group_2_grouped_cdna.tar.gz

731.72 kB

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3

iCount group

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna.bed.gz

9.75 MB

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_reads.bed.gz

10.63 MB

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna.bedgraph

45.03 MB

iCount annotate

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_annotated.bed.gz

12.58 MB

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_annotated.bedgraph

45.03 MB

Paraclu

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_peaks.bed.gz

42.74 kB

iCount RNA-maps

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna.tar.gz

1.41 MB

iCount summary

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_summary_type.tsv

443 B

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_summary_subtype.tsv

1021 B

SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna_summary_gene.tsv

2.54 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_48hr_mock_inputs_2_+_3_grouped_cdna.tar.gz

580.63 kB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3

Paraclu

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_peaks.bed.gz

48.33 kB

iCount RNA-maps

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna.tar.gz

1.55 MB

iCount group

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna.bed.gz

11.07 MB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_reads.bed.gz

12.01 MB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna.bedgraph

51.25 MB

iCount summary

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_summary_type.tsv

443 B

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_summary_subtype.tsv

1.00 kB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_summary_gene.tsv

2.63 MB

iCount annotate

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_annotated.bed.gz

14.21 MB

SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna_annotated.bedgraph

51.25 MB

PEKA

4mer analysis of SmB_CLIP_DMSO_mock_inputs_24hr_2_+_3_grouped_cdna.tar.gz

590.09 kB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3

iCount annotate

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_annotated.bed.gz

26.42 MB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_annotated.bedgraph

98.92 MB

iCount summary

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_summary_type.tsv

440 B

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_summary_subtype.tsv

1.01 kB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_summary_gene.tsv

3.05 MB

iCount RNA-maps

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna.tar.gz

2.16 MB

PEKA

4mer analysis of SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna.tar.gz

658.78 kB

iCount group

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna.bed.gz

21.14 MB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_reads.bed.gz

22.76 MB

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna.bedgraph

98.92 MB

Paraclu

SmB_CLIP_LLY_48hr_mock_inputs_2_+_3_grouped_cdna_peaks.bed.gz

126.35 kB