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DEPRECATED genomes and annotations
Jure Zmrzlikar
June 19, 2020
A meta collection that holds deprecated Genome and Annotation files
No Sample
Salmon Index
salmon_index
Directory
GTF file
annotation-hg19_sorted.gtf
129.61 MB
tracks
Directory
annotation-hg19.gtf
129.61 MB
annotation-hg19_sorted.gtf.idx
1.49 MB
trackList.json
414 B
GTF file
Mus_musculus.GRCm38.92_sorted.gtf.idx
1.30 MB
Mus_musculus.GRCm38.92.gtf
736.96 MB
tracks
Directory
Mus_musculus.GRCm38.92_sorted.gtf
736.96 MB
trackList.json
414 B
GTF file
annotation-hg19-ercc.sirv_sorted.gtf
135.57 MB
tracks
Directory
annotation-hg19-ercc.sirv_sorted.gtf.idx
1.50 MB
annotation-hg19-ercc.sirv.gtf
135.57 MB
trackList.json
414 B
GTF file
tracks
Directory
annotation-mm10-ercc_sorted.gtf.idx
1.30 MB
annotation-mm10-ercc.gtf
90.58 MB
annotation-mm10-ercc_sorted.gtf
90.58 MB
trackList.json
414 B
GTF file
tracks
Directory
Homo_sapiens.GRCh38.92.ercc.gtf
1.07 GB
Homo_sapiens.GRCh38.92.ercc_sorted.gtf
1.07 GB
Homo_sapiens.GRCh38.92.ercc_sorted.gtf.idx
1.48 MB
trackList.json
414 B
STAR genome index
star_index
Directory
Salmon Index
salmon_index
Directory
GTF file
tracks
Directory
Homo_sapiens.GRCh38.92.gtf
1.07 GB
Homo_sapiens.GRCh38.92_sorted.gtf.idx
1.47 MB
Homo_sapiens.GRCh38.92_sorted.gtf
1.07 GB
trackList.json
414 B
STAR genome index
star_index
Directory
GTF file
Mus_musculus.GRCm38.92.ercc_sorted.gtf.idx
1.30 MB
tracks
Directory
Mus_musculus.GRCm38.92.ercc.gtf
736.96 MB
trackList.json
414 B
Mus_musculus.GRCm38.92.ercc_sorted.gtf
736.96 MB
Salmon index
salmon_index
Directory
GTF file
annotation-rn6-ercc.gtf
50.60 MB
tracks
Directory
annotation-rn6-ercc_sorted.gtf
50.60 MB
annotation-rn6-ercc_sorted.gtf.idx
1.29 MB
trackList.json
414 B
GTF file
Mus_musculus.GRCm38.92.ercc.sirv_sorted.gtf.idx
1.30 MB
Mus_musculus.GRCm38.92.ercc.sirv_sorted.gtf
737.00 MB
Mus_musculus.GRCm38.92.ercc.sirv.gtf
737.00 MB
tracks
Directory
trackList.json
414 B
GTF file
tracks
Directory
annotation-mm10-ercc.sirv_sorted.gtf.idx
1.30 MB
trackList.json
414 B
annotation-mm10-ercc.sirv_sorted.gtf
90.62 MB
annotation-mm10-ercc.sirv.gtf
90.62 MB
GTF file
Rattus_norvegicus.Rnor_6.0.92.gtf
267.16 MB
Rattus_norvegicus.Rnor_6.0.92_sorted.gtf
267.16 MB
tracks
Directory
Rattus_norvegicus.Rnor_6.0.92_sorted.gtf.idx
1.33 MB
trackList.json
414 B
GTF file
Rattus_norvegicus.Rnor_6.0.ercc.gtf
267.17 MB
Rattus_norvegicus.Rnor_6.0.ercc_sorted.gtf.idx
1.34 MB
Rattus_norvegicus.Rnor_6.0.ercc_sorted.gtf
267.17 MB
tracks
Directory
trackList.json
414 B
GTF file
Rattus_norvegicus.Rnor_6.0.ercc.sirv.gtf
267.21 MB
Rattus_norvegicus.Rnor_6.0.ercc.sirv_sorted.gtf.idx
1.34 MB
tracks
Directory
Rattus_norvegicus.Rnor_6.0.ercc.sirv_sorted.gtf
267.21 MB
trackList.json
414 B
GTF file
Macaca_mulatta.Mmul_8.0.1.97.gtf
405.00 MB
Macaca_mulatta.Mmul_8.0.1.97_sorted.gtf
405.00 MB
tracks
Directory
trackList.json
481 B
Macaca_mulatta.Mmul_8.0.1.97_sorted.gtf.idx
1.42 MB
names
Directory
seq
Directory
GTF file
trackList.json
481 B
Macaca_mulatta.Mmul_8.0.1.97.ercc.sirv_sorted.gtf.idx
1.42 MB
Macaca_mulatta.Mmul_8.0.1.97.ercc.sirv.gtf
405.05 MB
Macaca_mulatta.Mmul_8.0.1.97.ercc.sirv_sorted.gtf
405.05 MB
tracks
Directory
seq
Directory
names
Directory
STAR genome index
star_index
Directory
Salmon index
salmon_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
iCount segment
results
Directory
chrom_lenghts.txt
16.31 kB
templates
Directory
STAR genome index (for iClip alternative workflow)
star_index
Directory
STAR genome index (for iClip alternative workflow)
star_index
Directory
GTF file
tracks
Directory
annotation-hg19-ercc.gtf
135.53 MB
trackList.json
414 B
annotation-hg19-ercc_sorted.gtf.idx
1.50 MB
annotation-hg19-ercc_sorted.gtf
135.53 MB
GTF file
Homo_sapiens.GRCh38.92.ercc.sirv.gtf
1.07 GB
tracks
Directory
Homo_sapiens.GRCh38.92.ercc.sirv_sorted.gtf
1.07 GB
Homo_sapiens.GRCh38.92.ercc.sirv_sorted.gtf.idx
1.48 MB
trackList.json
414 B
STAR genome index
star_index
Directory
GTF file
annotation-rn6-ercc.sirv_sorted.gtf
50.63 MB
annotation-rn6-ercc.sirv.gtf
50.64 MB
trackList.json
414 B
tracks
Directory
annotation-rn6-ercc.sirv_sorted.gtf.idx
1.29 MB
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
Salmon Index
salmon_index
Directory
STAR genome index
star_index
Directory
iCount segment
results
Directory
templates
Directory
chrom_lenghts.txt
1.07 kB
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
iCount segment
templates
Directory
chrom_lenghts.txt
3.12 kB
results
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
GTF file
annotation-rn6_sorted.gtf
50.54 MB
annotation-rn6.gtf
50.54 MB
annotation-rn6_sorted.gtf.idx
1.28 MB
tracks
Directory
trackList.json
414 B
GTF file
annotation-mm10.gtf
90.53 MB
annotation-mm10_sorted.gtf.idx
1.30 MB
tracks
Directory
trackList.json
414 B
annotation-mm10_sorted.gtf
90.53 MB
STAR genome index
star_index
Directory
DEPRECATED genomes and annotations
Back to Archive
DEPRECATED genomes and annotations