m6A_human_CD8

No Sample

Cutadapt (single-end)

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

72.21 MB

report.txt

707 B

K-mers

utr3 region.png

253.70 kB

genome region.png

267.50 kB

positional_distribution_other_exon.tsv

569.82 kB

other_exon region.png

197.84 kB

intron region.png

288.06 kB

kmer_frequency_intron.tsv

5.45 kB

kmer_frequency_genome.tsv

5.84 kB

positional_distribution_ncRNA.tsv

313.30 kB

positional_distribution_intron.tsv

209.29 kB

kmer_frequency_utr3.tsv

5.89 kB

kmer_frequency_ncRNA.tsv

5.73 kB

positional_distribution_utr3.tsv

545.28 kB

positional_distribution_genome.tsv

570.43 kB

kmer_frequency_other_exon.tsv

5.90 kB

ncRNA region.png

289.88 kB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bw

105.49 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

249.73 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam

290.42 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

STAR

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bam

259.25 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bam.bai

3.61 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

32.38 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_SJ.out.tab

1.33 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bw

32.87 kB

iCount reads proxy

stderr.txt

2.03 kB

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

72.21 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

419.19 kB

iCount group

Input_Naive_Group_4Reps_grouped_cdna.bed.gz

7.66 MB

Input_Naive_Group_4Reps_grouped_cdna.bedgraph

36.05 MB

Input_Naive_Group_4Reps_grouped_reads.bed.gz

7.85 MB

iCLIP reads proxy

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

208.34 MB

FASTQ file (CLIP)

fastqc

Directory

demux_nomatch_fastqc.zip

504.97 kB

demux_nomatch.fastq.gz

7.99 GB

Cutadapt (single-end)

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

41.36 MB

fastqc

Directory

report.txt

709 B

STAR

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam

711.28 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bw

106.44 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

586.92 MB

Cutadapt (single-end)

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

35.53 MB

fastqc

Directory

report.txt

708 B

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.63 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

13.92 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

33.27 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

14.18 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

66.81 MB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.14 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.09 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.72 MB

Paraclu

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

367.74 kB

PEKA

6mer analysis of input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

2.89 MB

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.89 MB

Paraclu

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

419.83 kB

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.34 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.99 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

4.33 MB

Cutadapt (single-end)

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

94.75 MB

report.txt

713 B

fastqc

Directory

iCount summary

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single_summary_type.tsv

479 B

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.71 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

16.79 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_skipped.bam

3.75 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_reads_single.bed.gz

13.44 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single.bedgraph

63.02 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single.bed.gz

12.70 MB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_reads_single.bed.gz

49.68 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_singleAndMulti.bed.gz

69.48 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_single.bedgraph

230 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_single.bed.gz

48.43 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_skipped.bam

3.93 kB

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.fastq.gz

279.29 MB

report.txt

676 B

K-mers

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.tar.gz

505.73 kB

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.fastq.gz

275.93 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_fastqc.zip

413.98 kB

stderr.txt

1.75 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-xl-polya-rna-20200123-ju.fastq.gz

272.00 MB

stderr.txt

1.44 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_fastqc.zip

414.97 kB

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_skipped.bam

3.48 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single.bed.gz

6.20 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_reads_single.bed.gz

6.92 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

8.70 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single.bedgraph

30.19 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

676 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.fastq.gz

182.85 MB

K-mers

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.tar.gz

454.34 kB

iCount RNA-maps

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single.tar.gz

1.99 MB

Paraclu

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single_peaks.bed.gz

144.51 kB

FASTQ file (single-end)

m6a-cd8-t-cells-naive-donor8-20200123-ju.fastq.gz

178.43 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_fastqc.zip

411.85 kB

stderr.txt

1.44 kB

fastqc

Directory

iCount summary

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.05 kB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single_summary_type.tsv

481 B

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.85 MB

Paraclu

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single_peaks.bed.gz

434.58 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_reads_single.bed.gz

15.63 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_skipped.bam

4.88 kB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

19.76 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single.bed.gz

14.22 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single.bedgraph

69.86 MB

STAR

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

44.85 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped.bam

467.18 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped.bam.bai

3.57 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_SJ.out.tab

3.78 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_stats.txt

1.82 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_reads_single.bed.gz

52.18 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_skipped.bam

3.93 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_singleAndMulti.bed.gz

74.01 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_single.bed.gz

49.79 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_single.bedgraph

226 B

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped.fastq.gz

440.50 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_fastqc.zip

408.87 kB

stderr.txt

1.73 kB

STAR

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

440.50 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bam

514.08 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bw

105.77 kB

K-mers

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped.tar.gz

516.18 kB

iCount summary

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single_summary_type.tsv

483 B

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.84 MB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

31.73 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped.bam.bai

3.67 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_SJ.out.tab

3.69 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped.bam

357.33 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_single.bed.gz

57.94 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_singleAndMulti.bed.gz

98.72 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_skipped.bam

3.93 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_single.bedgraph

226 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_reads_single.bed.gz

59.25 kB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bam

335.31 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bw

105.74 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

284.52 MB

Cutadapt (single-end)

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.fastq.gz

286.53 MB

fastqc

Directory

report.txt

675 B

iCount RNA-maps

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single.tar.gz

2.98 MB

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped.fastq.gz

284.52 MB

stderr.txt

1.73 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_fastqc.zip

413.20 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-day1-donor9-20200123-ju.fastq.gz

279.25 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_fastqc.zip

413.38 kB

stderr.txt

1.42 kB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_skipped.bam

3.93 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_reads_single.bed.gz

42.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_single.bed.gz

40.80 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_singleAndMulti.bed.gz

53.73 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_single.bedgraph

226 B

Cutadapt (single-end)

fastqc

Directory

report.txt

675 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.fastq.gz

253.27 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single.tar.gz

2.33 MB

iCount reads proxy

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped.fastq.gz

249.73 MB

fastqc

Directory

stderr.txt

1.73 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_fastqc.zip

410.58 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-day5-donor8-20200123-ju.fastq.gz

246.53 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_fastqc.zip

411.55 kB

stderr.txt

1.42 kB

iCount reads proxy

fastqc

Directory

stderr.txt

2.07 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped.fastq.gz

41.32 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

443.74 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz

16.04 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

19.43 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz

16.54 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph

256 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

5.65 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam

67.66 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam.bai

2.84 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

1.24 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bw

24.41 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

K-mers

kmer_frequency_ncRNA.tsv

5.67 kB

other_exon region.png

201.21 kB

kmer_frequency_intron.tsv

4.95 kB

positional_distribution_ncRNA.tsv

292.37 kB

positional_distribution_utr3.tsv

535.29 kB

positional_distribution_intron.tsv

167.67 kB

kmer_frequency_utr3.tsv

5.83 kB

utr3 region.png

238.71 kB

ncRNA region.png

250.94 kB

positional_distribution_genome.tsv

569.69 kB

genome region.png

244.76 kB

intron region.png

167.62 kB

positional_distribution_other_exon.tsv

566.41 kB

kmer_frequency_genome.tsv

5.82 kB

kmer_frequency_other_exon.tsv

5.92 kB

iCount summary

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

464 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

1.01 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.33 MB

iCount RNA-maps

results.tar.gz

1.29 MB

STAR

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam

107.20 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.49 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

74.39 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bw

104.70 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_skipped.bam

3.17 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

4.71 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

5.03 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

22.90 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

7.63 MB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz

27.51 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

34.66 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph

258 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz

28.31 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

1.02 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

466 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.51 MB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

7.66 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_skipped.bam

3.25 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

8.13 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

37.69 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

11.97 MB

K-mers

kmer_frequency_ncRNA.tsv

5.89 kB

intron region.png

300.66 kB

kmer_frequency_intron.tsv

5.88 kB

kmer_frequency_genome.tsv

5.90 kB

positional_distribution_intron.tsv

361.25 kB

kmer_frequency_utr3.tsv

5.76 kB

positional_distribution_ncRNA.tsv

495.79 kB

positional_distribution_utr3.tsv

562.33 kB

other_exon region.png

150.57 kB

positional_distribution_genome.tsv

567.64 kB

positional_distribution_other_exon.tsv

562.03 kB

ncRNA region.png

285.04 kB

genome region.png

184.91 kB

utr3 region.png

207.70 kB

kmer_frequency_other_exon.tsv

5.81 kB

iCount summary

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

475 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.69 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

985 B

iCount RNA-maps

results.tar.gz

2.20 MB

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam

136.30 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam.bai

19.44 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

94.65 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bw

104.59 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_SJ.out.tab

0 B

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped.fastq.gz

94.65 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

448.14 kB

stderr.txt

2.12 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_skipped.bam

3.77 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

2.55 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

10.22 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

2.19 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

3.78 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

24.06 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_reads_single.bed.gz

20.01 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bed.gz

18.53 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bedgraph

262 B

iCount summary

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.24 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

466 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

976 B

Cutadapt (single-end)

fastqc

Directory

report.txt

722 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_fastqc.zip

435.61 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.fastq.gz

77.57 MB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju.fastq.gz

77.16 MB

stderr.txt

1.67 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_fastqc.zip

439.14 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bed.gz

16.15 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

20.46 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bedgraph

258 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_reads_single.bed.gz

17.60 kB

iCount reads proxy

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped.fastq.gz

77.89 MB

fastqc

Directory

stderr.txt

2.08 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

428.94 kB

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

10.65 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped.bam.bai

2.95 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped.bam

101.12 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

900.00 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped.bw

21.73 kB

K-mers

kmer_frequency_intron.tsv

4.98 kB

positional_distribution_ncRNA.tsv

187.83 kB

positional_distribution_intron.tsv

169.26 kB

ncRNA region.png

186.10 kB

other_exon region.png

220.15 kB

positional_distribution_utr3.tsv

517.05 kB

kmer_frequency_ncRNA.tsv

4.95 kB

intron region.png

209.02 kB

positional_distribution_other_exon.tsv

555.55 kB

genome region.png

281.81 kB

kmer_frequency_utr3.tsv

5.78 kB

kmer_frequency_genome.tsv

5.88 kB

utr3 region.png

254.28 kB

kmer_frequency_other_exon.tsv

5.81 kB

positional_distribution_genome.tsv

565.31 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_skipped.bam

4.18 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

3.14 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

3.65 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

5.33 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

14.99 MB

iCount reads proxy

fastqc

Directory

stderr.txt

2.08 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped.fastq.gz

136.83 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

427.31 kB

iCount xlsites

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_singleAndMulti.bed.gz

5.72 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_skipped.bam

4.47 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single.bed.gz

2.94 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single.bedgraph

13.88 MB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.36 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_fastqc.zip

488.94 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju.fastq.gz

176.73 MB

iCount RNA-maps

results.tar.gz

1.39 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

708 B

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_fastqc.zip

449.69 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.fastq.gz

170.63 MB

iCount summary

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single_summary_gene.tsv

1.02 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single_summary_type.tsv

268 B

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single_summary_subtype.tsv

648 B

iCount xlsites

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_skipped.bam

2.93 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_singleAndMulti.bed.gz

52.11 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single.bed.gz

7.39 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single.bedgraph

24.01 kB

iCount RNA-maps

results.tar.gz

239.01 kB

Cutadapt (single-end)

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.fastq.gz

589.38 kB

fastqc

Directory

report.txt

714 B

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_fastqc.zip

608.62 kB

K-mers

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

372.13 kB

iCount RNA-maps

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

1.55 MB

Paraclu

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

39.71 kB

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.24 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

4.08 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

18.85 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

10.12 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

4.18 MB

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam

86.91 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

4.12 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bw

39.05 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

4.28 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

1.42 MB

iCount reads proxy

fastqc

Directory

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

35.53 MB

stderr.txt

2.05 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

419.57 kB

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

35.53 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.06 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bam

46.13 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

Cutadapt (single-end)

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

36.18 MB

fastqc

Directory

report.txt

692 B

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju.fastq.gz

35.24 MB

stderr.txt

1.73 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_fastqc.zip

415.87 kB

iCount summary

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

478 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

2.46 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.44 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

33.27 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

13.91 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

14.18 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

66.81 MB

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

17.68 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped.bam

345.86 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

3.36 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.09 MB

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

74.14 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

262 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

73.36 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

104.00 kB

iCount reads proxy

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

151.56 MB

stderr.txt

2.05 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

421.84 kB

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

151.56 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bam

194.59 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bw

105.53 kB

Cutadapt (single-end)

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.fastq.gz

153.62 MB

report.txt

693 B

K-mers

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

477.92 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

2.94 MB

Paraclu

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

322.17 kB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju.fastq.gz

149.83 MB

stderr.txt

1.73 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_fastqc.zip

410.06 kB

K-mers

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485.86 kB

iCount xlsites

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69.91 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

14.53 MB

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14.81 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

34.20 MB

iCount xlsites

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109.10 kB

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74.20 kB

iCount reads proxy

fastqc

Directory

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152.83 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

413.13 kB

stderr.txt

2.03 kB

STAR

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20.56 kB

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0 B

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105.66 kB

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1.78 kB

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152.83 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bam

198.92 MB

Cutadapt (single-end)

fastqc

Directory

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692 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

156.88 MB

iCount RNA-maps

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3.05 MB

Paraclu

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

343.96 kB

iCount summary

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

473 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

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2.51 MB

iCount xlsites

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3.04 kB

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8.73 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

3.92 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

18.32 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

4.03 MB

STAR

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4.09 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam

77.38 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.80 kB

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1.49 MB

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3.77 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bw

34.70 kB

iCount xlsites

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input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_skipped.bam

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43.79 kB

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44.17 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

262 B

STAR

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34.01 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.03 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bam

43.92 MB

Cutadapt (single-end)

fastqc

Directory

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34.55 MB

report.txt

692 B

K-mers

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375.29 kB

FASTQ file (single-end)

fastqc

Directory

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1.73 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju.fastq.gz

33.68 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_fastqc.zip

418.10 kB

iCount summary

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1.99 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

472 B

iCount reads proxy

fastqc

Directory

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2.03 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

55.81 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

419.80 kB

iCount xlsites

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3.93 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

260 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

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input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

51.25 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

51.69 kB

Cutadapt (single-end)

fastqc

Directory

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691 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

56.51 MB

K-mers

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404.36 kB

FASTQ file (single-end)

fastqc

Directory

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55.06 MB

stderr.txt

1.71 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_fastqc.zip

418.01 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

3.12 MB

iCount xlsites

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15.69 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.35 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

35.12 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

16.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

75.64 MB

iCount xlsites

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3.93 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

72.92 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

72.28 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

107.02 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

260 B

iCount reads proxy

fastqc

Directory

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172.13 MB

stderr.txt

2.03 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

415.38 kB

STAR

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20.56 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bam

220.09 MB

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105.57 kB

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172.13 MB

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1.78 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

Cutadapt (single-end)

fastqc

Directory

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692 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

174.21 MB

K-mers

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496.78 kB

Paraclu

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367.20 kB

FASTQ file (single-end)

fastqc

Directory

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169.91 MB

stderr.txt

1.71 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_fastqc.zip

410.89 kB

K-mers

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

425.68 kB

iCount xlsites

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input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

7.50 MB

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17.37 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

34.97 MB

iCount xlsites

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input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

85.21 kB

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input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

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Cutadapt (single-end)

fastqc

Directory

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74.44 MB

report.txt

691 B

Paraclu

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143.28 kB

FASTA file

GRCh38.p10.genome.fasta

3.06 GB

GRCh38.p10.genome.dict

54.99 kB

GRCh38.p10.genome.fasta.gz

878.33 MB

GRCh38.p10.genome.fasta.fai

18.66 kB

Cutadapt (single-end)

fastqc

Directory

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172.13 MB

report.txt

708 B

Cutadapt (single-end)

fastqc

Directory

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34.01 MB

report.txt

708 B

Cutadapt (single-end)

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

132.77 MB

report.txt

711 B

fastqc

Directory

Cutadapt (single-end)

fastqc

Directory

report.txt

711 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

136.97 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

694 B

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed.fastq.gz

275.93 MB

Cutadapt (single-end)

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

74.46 MB

fastqc

Directory

report.txt

710 B

Cutadapt (single-end)

report.txt

709 B

fastqc

Directory

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151.56 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

708 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

152.83 MB

Cutadapt (single-end)

fastqc

Directory

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693 B

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed.fastq.gz

284.52 MB

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.fastq.gz

249.73 MB

report.txt

693 B

Cutadapt (single-end)

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

55.81 MB

fastqc

Directory

report.txt

707 B

Cutadapt (single-end)

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

77.97 MB

fastqc

Directory

report.txt

710 B

Cutadapt (single-end)

fastqc

Directory

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253.27 MB

report.txt

675 B

Cutadapt (single-end)

fastqc

Directory

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181.29 MB

report.txt

694 B

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed.fastq.gz

440.50 MB

report.txt

693 B

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

56.96 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

1.24 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

2.84 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

5.66 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

24.41 kB

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

14.52 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

102.42 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

24.35 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

953.22 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

3.15 MB

STAR

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86.91 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

4.28 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

1.42 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bw

39.05 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

4.12 MB

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.70 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

166.45 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.42 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bw

48.68 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

7.29 MB

STAR

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

16.99 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.56 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

383.88 MB

STAR

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

1.49 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

77.38 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bw

34.70 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

4.09 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

3.77 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.80 kB

STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

3.52 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

16.91 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

182.59 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

34.62 kB

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

3.25 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

147.69 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

27.06 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

16.50 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

1.37 MB

iCount summary

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

469 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.33 MB

STAR

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

10.13 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

3.38 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

1.80 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

106.97 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

28.94 kB

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.22 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

28.38 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed.bam

309.99 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.78 MB

iCount RNA-maps

m6A_Naive_Group_4Reps_grouped_cdna.tar.gz

2.66 MB

Paraclu

m6A_Naive_Group_4Reps_grouped_cdna_peaks.bed.gz

318.05 kB

PEKA

6mer analysis of m6A_Naive_Group_4Reps_grouped_cdna.tar.gz

4.87 MB

iCount group

m6A_Naive_Group_4Reps_grouped_cdna.bed.gz

12.34 MB

m6A_Naive_Group_4Reps_grouped_cdna.bedgraph

58.22 MB

m6A_Naive_Group_4Reps_grouped_reads.bed.gz

13.54 MB

iCount summary

m6A_Naive_Group_4Reps_grouped_cdna_summary_gene.tsv

2.05 MB

m6A_Naive_Group_4Reps_grouped_cdna_summary_type.tsv

445 B

m6A_Naive_Group_4Reps_grouped_cdna_summary_subtype.tsv

1.01 kB

iCount annotate

m6A_Naive_Group_4Reps_grouped_cdna_annotated.bed.gz

16.11 MB

m6A_Naive_Group_4Reps_grouped_cdna_annotated.bedgraph

58.22 MB

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.36 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.09 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

17.68 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

345.86 MB

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

17.34 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.01 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

349.91 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.56 MB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bw

31.54 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bam

260.75 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.94 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

22.74 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.06 MB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.67 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed.bam

357.32 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

31.73 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.69 MB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam

294.01 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam.bai

3.09 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

23.30 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_SJ.out.tab

2.95 MB

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bw

44.15 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.11 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

5.35 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

132.98 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.83 MB

STAR

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

18.73 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed.bw

29.19 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed.bam

192.86 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.08 MB

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

2.95 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

83.24 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

900.00 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

21.73 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

10.66 MB

STAR

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed.bam

467.19 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.78 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.82 kB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

44.85 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.57 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

12.67 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

2.65 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

3.37 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

4.06 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

2.85 MB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.29 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

2.19 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

3.82 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

2.55 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

3.78 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

10.22 MB

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.32 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

10.13 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

4.08 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

4.18 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

18.85 MB

iCount xlsites

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

34.97 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

7.33 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

2.98 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

17.37 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

7.50 MB

iCount RNA-maps

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.22 MB

iCount group

m6A_Day1_Group_5Reps_grouped_reads.bed.gz

30.52 MB

m6A_Day1_Group_5Reps_grouped_cdna.bed.gz

28.52 MB

m6A_Day1_Group_5Reps_grouped_cdna.bedgraph

139.07 MB

iCount xlsites

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.13 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

18.32 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

3.92 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

8.74 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

4.03 MB

iCount annotate

m6A_Day1_Group_5Reps_grouped_cdna_annotated.bedgraph

139.07 MB

m6A_Day1_Group_5Reps_grouped_cdna_annotated.bed.gz

36.20 MB

Paraclu

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

41.50 kB

iCount RNA-maps

m6A_Day5_Group_4Reps_grouped_cdna.tar.gz

3.19 MB

Paraclu

m6A_Day5_Group_4Reps_grouped_cdna_peaks.bed.gz

552.08 kB

PEKA

6mer analysis of m6A_Day5_Group_4Reps_grouped_cdna.tar.gz

4.65 MB

Paraclu

m6A_Day1_Group_5Reps_grouped_cdna_peaks.bed.gz

962.56 kB

iCount RNA-maps

m6A_Day1_Group_5Reps_grouped_cdna.tar.gz

4.19 MB

iCount group

m6A_Day5_Group_4Reps_grouped_cdna.bedgraph

79.39 MB

m6A_Day5_Group_4Reps_grouped_reads.bed.gz

17.65 MB

m6A_Day5_Group_4Reps_grouped_cdna.bed.gz

16.18 MB

iCount summary

m6A_Day1_Group_5Reps_grouped_cdna_summary_subtype.tsv

1.02 kB

m6A_Day1_Group_5Reps_grouped_cdna_summary_type.tsv

450 B

m6A_Day1_Group_5Reps_grouped_cdna_summary_gene.tsv

2.31 MB

iCount summary

m6A_Day5_Group_4Reps_grouped_cdna_summary_subtype.tsv

1.02 kB

m6A_Day5_Group_4Reps_grouped_cdna_summary_type.tsv

448 B

m6A_Day5_Group_4Reps_grouped_cdna_summary_gene.tsv

2.04 MB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

14.99 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

3.65 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

4.23 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

3.15 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

5.33 MB

iCount annotate

m6A_Day5_Group_4Reps_grouped_cdna_annotated.bed.gz

21.02 MB

m6A_Day5_Group_4Reps_grouped_cdna_annotated.bedgraph

79.39 MB

iCount RNA-maps

Input_Naive_Group_4Reps_grouped_cdna.tar.gz

2.13 MB

Paraclu

Input_Naive_Group_4Reps_grouped_cdna_peaks.bed.gz

104.30 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

7.66 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

8.13 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

3.30 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

37.69 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

11.97 MB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

22.90 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

5.03 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

7.63 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

4.71 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

3.22 kB

iCount xlsites

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

75.64 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.44 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

16.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

35.12 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

15.70 MB

iCount RNA-maps

Input_Day1_Group_4Reps_grouped_cdna.tar.gz

4.26 MB

PEKA

6mer analysis of Input_Day1_Group_4Reps_grouped_cdna.tar.gz

4.64 MB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

16.80 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.84 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

63.02 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

13.44 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

12.72 MB

iCount annotate

Input_Naive_Group_4Reps_grouped_cdna_annotated.bed.gz

10.12 MB

Input_Naive_Group_4Reps_grouped_cdna_annotated.bedgraph

36.05 MB

iCount RNA-maps

Input_Day5_Group_4Reps_grouped_cdna.tar.gz

3.55 MB

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

14.18 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

66.81 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

13.92 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.52 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

33.27 MB

iCount group

Input_Day1_Group_4Reps_grouped_cdna.bedgraph

149.00 MB

Input_Day1_Group_4Reps_grouped_cdna.bed.gz

31.01 MB

Input_Day1_Group_4Reps_grouped_reads.bed.gz

31.52 MB

iCount summary

Input_Naive_Group_4Reps_grouped_cdna_summary_subtype.tsv

1017 B

Input_Naive_Group_4Reps_grouped_cdna_summary_gene.tsv

2.09 MB

Input_Naive_Group_4Reps_grouped_cdna_summary_type.tsv

435 B

iCount group

Input_Day5_Group_4Reps_grouped_cdna.bed.gz

20.23 MB

Input_Day5_Group_4Reps_grouped_cdna.bedgraph

97.45 MB

Input_Day5_Group_4Reps_grouped_reads.bed.gz

20.61 MB

iCount annotate

Input_Day1_Group_4Reps_grouped_cdna_annotated.bedgraph

149.00 MB

Input_Day1_Group_4Reps_grouped_cdna_annotated.bed.gz

38.90 MB

iCount summary

Input_Day1_Group_4Reps_grouped_cdna_summary_subtype.tsv

1.01 kB

Input_Day1_Group_4Reps_grouped_cdna_summary_gene.tsv

2.94 MB

Input_Day1_Group_4Reps_grouped_cdna_summary_type.tsv

442 B

Paraclu

Input_Day1_Group_4Reps_grouped_cdna_peaks.bed.gz

708.10 kB

PEKA

6mer analysis of m6A_Day1_Group_5Reps_grouped_cdna.tar.gz

5.23 MB

iCount annotate

Input_Day5_Group_4Reps_grouped_cdna_annotated.bedgraph

97.45 MB

Input_Day5_Group_4Reps_grouped_cdna_annotated.bed.gz

25.84 MB

iCount summary

Input_Day5_Group_4Reps_grouped_cdna_summary_subtype.tsv

1.00 kB

Input_Day5_Group_4Reps_grouped_cdna_summary_type.tsv

441 B

Input_Day5_Group_4Reps_grouped_cdna_summary_gene.tsv

2.70 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

40.01 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

8.16 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.73 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

11.31 MB

Paraclu

Input_Day5_Group_4Reps_grouped_cdna_peaks.bed.gz

481.91 kB

PEKA

6mer analysis of Input_Naive_Group_4Reps_grouped_cdna.tar.gz

3.21 MB

iCount xlsites

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

69.91 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.57 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

14.81 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

34.21 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

14.53 MB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

2.98 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

8.35 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

1.79 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

3.10 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

2.08 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

35.37 kB

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

15.14 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

6.43 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

6.59 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.31 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

30.37 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

467 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.42 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

983 B

iCount RNA-maps

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.06 MB

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

6.92 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

30.19 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.57 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

6.22 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

8.73 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_skipped.bam

3.86 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.bedgraph

40.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.bed.gz

8.16 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

11.61 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

68.98 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

4.65 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

14.66 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

13.97 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

20.27 MB

Paraclu

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

54.24 kB

Paraclu

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

39.77 kB

iCount summary

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

431 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.33 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

1009 B

iCount summary

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.32 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

946 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

436 B

Paraclu

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

38.36 kB

iCount summary

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1006 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.80 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

438 B

iCount summary

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1019 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

2.08 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

436 B

iCount RNA-maps

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

1.55 MB

iCount RNA-maps

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

1.60 MB

Paraclu

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

143.62 kB

iCount summary

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.70 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1014 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

435 B

iCount summary

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.41 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

953 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

435 B

Paraclu

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

70.91 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

4.96 kB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

14.26 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

15.63 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

69.86 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

19.80 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.69 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

440 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

950 B

iCount RNA-maps

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

3.01 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

239.86 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.50 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

431 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

1004 B

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.42 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

117.30 kB

PEKA

6mer analysis of m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

3.21 MB

iCount summary

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

2.49 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

442 B

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

2.20 MB

iCount summary

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

443 B

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.72 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

3.12 MB

iCount RNA-maps

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.94 MB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.59 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

443 B

iCount summary

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

2.46 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

439 B

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

237.00 kB

Paraclu

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

322.85 kB

iCount RNA-maps

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

3.05 MB

Paraclu

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

148.65 kB

Paraclu

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

103.47 kB

PEKA

6mer analysis of input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.73 MB

iCount summary

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

440 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

2.51 MB

iCount summary

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.53 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

440 B

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1023 B

Paraclu

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

344.26 kB

iCount summary

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

439 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1016 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.99 MB

iCount summary

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

432 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

942 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.24 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.99 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.tar.gz

2.34 MB

iCount summary

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

445 B

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.84 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_type.tsv

438 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_gene.tsv

1.59 MB

iCount RNA-maps

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

1.99 MB

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

237.04 kB

Paraclu

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

459.70 kB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.tar.gz

3.99 MB

Paraclu

peaks.bed.gz

70.55 kB

PEKA

6mer analysis of Input_Day5_Group_4Reps_grouped_cdna.tar.gz

4.15 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.99 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

693 B

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.fastq.gz

249.73 MB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bw

31.54 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bam

260.75 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.06 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.94 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

22.74 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

8.16 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.73 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

40.01 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

11.31 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.34 MB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.59 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

443 B

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

237.00 kB

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_skipped.bam

3.67 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single.bed.gz

6.22 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

8.73 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_reads_single.bed.gz

6.92 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single.bedgraph

30.19 MB

iCount RNA-maps

results.tar.gz

1.14 MB

PEKA

6mer analysis of m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

2.80 MB

PEKA

6mer analysis of m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

2.95 MB

PEKA

6mer analysis of input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

2.56 MB

PEKA

6mer analysis of input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

2.54 MB

PEKA

6mer analysis of input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.09 MB

iCount summary

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.85 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

445 B

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

3.14 MB

Paraclu

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

442.89 kB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

3.71 MB

PEKA

6mer analysis of input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.84 MB

PEKA

6mer analysis of m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

4.28 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

2.76 MB

PEKA

6mer analysis of input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.76 MB

PEKA

6mer analysis of m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.74 MB

Paraclu

peaks.bed.gz

116.96 kB

iCount RNA-maps

results.tar.gz

1.42 MB

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.43 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

4.08 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

10.13 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

4.18 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

18.85 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

4.52 MB

iCount xlsites

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.68 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

14.53 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

34.21 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

14.81 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

69.91 MB

Upload iCount sample annotation

iclip_annotation_PM18271_new.xlsx

12.15 kB

iclip_annotation_PM18271_new.tab.gz

970 B

FASTQ file (single-end)

HAL249A1-A35_S37_L005_R1_001.fastq.gz

17.64 GB

fastqc

Directory

stderr.txt

1.21 kB

HAL249A1-A35_S37_L005_R1_001_fastqc.zip

594.87 kB

Upload iCount sample annotation

iclip_annotation_PM18271_new2.xlsx

12.14 kB

iclip_annotation_PM18271_new2.tab.gz

952 B

Upload iCount sample annotation

iclip_annotation_PM18271_new3.xlsx

12.15 kB

iclip_annotation_PM18271_new3.tab.gz

971 B

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

1.31 kB

FASTQ file (CLIP)

demux_nomatch.fastq.gz

13.22 GB

fastqc

Directory

demux_nomatch_fastqc.zip

598.94 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

1.30 kB

FASTQ file (CLIP)

demux_nomatch.fastq.gz

12.95 GB

fastqc

Directory

demux_nomatch_fastqc.zip

602.99 kB

FASTQ file (CLIP)

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju.fastq.gz

423.15 kB

fastqc

Directory

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_fastqc.zip

428.76 kB

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju.fastq.gz

186.16 kB

fastqc

Directory

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_fastqc.zip

457.10 kB

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju.fastq.gz

1.50 MB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_fastqc.zip

419.11 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju.fastq.gz

296.74 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_fastqc.zip

475.54 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju.fastq.gz

220.47 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_fastqc.zip

477.54 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju.fastq.gz

260.35 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_fastqc.zip

484.91 kB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.59 MB

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju.fastq.gz

495.33 kB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_fastqc.zip

434.27 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

489.96 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

225.56 kB

PEKA

4mer analysis of input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju.fastq.gz

73.42 kB

fastqc

Directory

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_fastqc.zip

577.07 kB

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

189.96 kB

fastqc

Directory

iCount RNA-maps

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

343.50 kB

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju.fastq.gz

597 B

fastqc

Directory

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_fastqc.zip

600.99 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju.fastq.gz

296.74 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_fastqc.zip

475.54 kB

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju.fastq.gz

6.31 kB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_fastqc.zip

685.24 kB

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju.fastq.gz

67.61 MB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_fastqc.zip

442.32 kB

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju.fastq.gz

11.73 MB

fastqc

Directory

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_fastqc.zip

433.25 kB

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju.fastq.gz

11.73 MB

fastqc

Directory

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_fastqc.zip

421.89 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

1021 B

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.79 MB

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju.fastq.gz

220.47 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_fastqc.zip

477.54 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

662 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.29 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.54 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

573.05 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju.fastq.gz

260.35 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_fastqc.zip

484.91 kB

iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

242.99 MB

fastqc

Directory

Paraclu

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

83.73 kB

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju.fastq.gz

3.11 kB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_fastqc.zip

611.68 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

126.45 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

162.75 kB

FASTQ file (CLIP)

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju.fastq.gz

841.88 kB

fastqc

Directory

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_fastqc.zip

516.92 kB

iCLIP reads proxy

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

857.84 kB

fastqc

Directory

Paraclu

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116 B

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju.fastq.gz

976.29 kB

fastqc

Directory

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_fastqc.zip

508.31 kB

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

993.87 kB

fastqc

Directory

iCount RNA-maps

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

449.26 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

283.60 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

209.39 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

243.93 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

504.67 kB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

1.53 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

431.42 kB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

74.71 kB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

189.59 kB

fastqc

Directory

FASTQ file (CLIP)

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju.fastq.gz

16.51 MB

fastqc

Directory

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_fastqc.zip

424.69 kB

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju.fastq.gz

117.07 MB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_fastqc.zip

434.92 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju.fastq.gz

220.47 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_fastqc.zip

477.54 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju.fastq.gz

296.74 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_fastqc.zip

475.54 kB

Paraclu

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116.61 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

662 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.29 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.54 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

578.81 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju.fastq.gz

260.35 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_fastqc.zip

484.91 kB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.59 MB

Paraclu

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

83.73 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.87 MB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

2.46 MB

Paraclu

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

175.39 kB

Upload iCount sample annotation

iclip_annotation_PM18271_new3_CORRECT_HIFsamples.xlsx

12.72 kB

iclip_annotation_PM18271_new3_CORRECT_HIFsamples.tab.gz

1.15 kB

iCount RNA-maps

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

1023.08 kB

iCount peaks

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

358.88 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

1.68 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

1.24 MB

iCount peaks

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

411.46 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

2.00 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

1.48 MB

iCount peaks

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

701.23 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

2.79 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

2.69 MB

iCount RNA-maps

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

844.68 kB

iCount peaks

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

1.10 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

4.04 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

4.67 MB

iCount peaks

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

2.43 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

6.48 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

10.82 MB

iCount peaks

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

2.43 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_scores.tsv.gz

6.81 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bedgraph

10.78 MB

iCount peaks

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

1.48 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_scores.tsv.gz

5.20 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bedgraph

6.37 MB

iCount peaks

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

495.03 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

2.37 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

1.87 MB

iCount peaks

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

4.92 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_scores.tsv.gz

11.67 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bedgraph

22.48 MB

iCount peaks

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

2.44 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_scores.tsv.gz

6.82 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_peaks.bedgraph

10.80 MB

iCount peaks

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

5.37 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_scores.tsv.gz

11.62 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bedgraph

24.67 MB

Paraclu

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

4.82 kB

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

356.41 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

283.60 MB

fastqc

Directory

FASTQ file (CLIP)

demux_nomatch.fastq.gz

12.47 GB

fastqc

Directory

demux_nomatch_fastqc.zip

607.79 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

2.05 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

209.39 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

243.93 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

694 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

3.08 kB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

858.01 kB

fastqc

Directory

Cutadapt (single-end)

report.txt

695 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

6.32 kB

fastqc

Directory

FASTQ file (CLIP)

demux_nomatch.fastq.gz

9.71 GB

fastqc

Directory

demux_nomatch_fastqc.zip

585.34 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

994.77 kB

fastqc

Directory

Cutadapt (single-end)

report.txt

695 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

556 B

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

208.34 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam

261.39 MB

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1.78 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bw

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STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

281.32 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam

352.91 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

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m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bw

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STAR

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1.53 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam.bai

19.09 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam

1.98 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

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0 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bw

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STAR

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433.99 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam.bai

9.73 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam

559.32 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

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input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bw

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STAR

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504.85 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam.bai

14.66 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam

657.19 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_SJ.out.tab

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input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bw

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STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

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input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bam.bai

5.80 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bam

101.77 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.77 kB

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0 B

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STAR

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input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam.bai

6.64 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam

249.14 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

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input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bw

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Cutadapt (single-end)

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m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

283.60 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

242.99 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bam

307.42 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_stats.txt

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m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bw

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Cutadapt (single-end)

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693 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

209.39 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

16.92 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

69.36 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

243.93 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

12.03 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

12.02 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

694 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

120.01 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

208.34 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam

261.38 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_stats.txt

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m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

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m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bw

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STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

281.32 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam

352.91 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bw

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STAR

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input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam.bai

2.07 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam

8.00 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.76 kB

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0 B

STAR

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input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam.bai

2.21 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam

12.06 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

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input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bw

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STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

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input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam.bai

16.06 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam

1.26 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

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0 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bw

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STAR

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857.84 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam.bai

16.20 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam

1.09 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

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0 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bw

103.63 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

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263.56 MB

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1.39 MB

STAR

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

69.25 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

2.07 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

1.54 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.78 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

22.05 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

16.50 kB

STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

10.58 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

1.57 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

279.57 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.78 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

3.68 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

15.61 kB

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

28.34 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

1.75 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

696.40 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.78 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

7.92 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

16.03 kB

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

54.59 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.16 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

353.15 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.81 MB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

72.41 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

159.25 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

78.75 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

281.32 MB

fastqc

Directory

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

64.40 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

141.13 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

69.56 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

208.34 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

50.83 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.26 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

320.32 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.45 MB

iCount xlsites

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

68.07 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

114.72 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

68.45 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.fastq.gz

69.14 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

37.41 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

63.49 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

37.71 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

16.87 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

29.25 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

52.28 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

29.43 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.fastq.gz

11.95 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

31.37 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

56.25 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

31.57 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

70.08 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

157.84 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

75.98 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

256 B

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

11.89 MB

fastqc

Directory

iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

242.99 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

85.35 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

146.12 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

85.68 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

120.02 MB

fastqc

Directory

iCount RNA-maps

input-naive-4reps_grouped_cdna.tar.gz

2.34 MB

Paraclu

input-naive-4reps_grouped_cdna_peaks.bed.gz

130.91 kB

iCount group

input-day1-4Reps_grouped_cdna.bed.gz

32.34 MB

input-day1-4Reps_grouped_reads.bed.gz

32.86 MB

input-day1-4Reps_grouped_cdna.bedgraph

154.93 MB

STAR

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

419 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

1.35 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

12.02 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.77 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

209 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

15.43 kB

iCount summary

input-day1-4Reps_grouped_cdna_summary_type.tsv

439 B

input-day1-4Reps_grouped_cdna_summary_subtype.tsv

1.01 kB

input-day1-4Reps_grouped_cdna_summary_gene.tsv

4.10 MB

Paraclu

input-day1-4Reps_grouped_cdna_peaks.bed.gz

723.59 kB

iCount RNA-maps

input-day1-4Reps_grouped_cdna.tar.gz

4.33 MB

iCount group

input-naive-4reps_grouped_cdna.bed.gz

9.92 MB

input-naive-4reps_grouped_reads.bed.gz

10.13 MB

input-naive-4reps_grouped_cdna.bedgraph

46.05 MB

STAR

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

1.07 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

1.37 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

20.86 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.77 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

436 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

15.43 kB

iCount group

input-day5-4Reps_grouped_cdna.bed.gz

34.98 MB

input-day5-4Reps_grouped_reads.bed.gz

35.49 MB

input-day5-4Reps_grouped_cdna.bedgraph

164.54 MB

iCount summary

input-day5-4Reps_grouped_cdna_summary_type.tsv

448 B

input-day5-4Reps_grouped_cdna_summary_subtype.tsv

1.01 kB

input-day5-4Reps_grouped_cdna_summary_gene.tsv

4.45 MB

iCount RNA-maps

input-day5-4Reps_grouped_cdna.tar.gz

4.39 MB

Paraclu

input-day5-4Reps_grouped_cdna_peaks.bed.gz

717.26 kB

PEKA

5mer analysis of input-day5-4Reps_grouped_cdna.tar.gz

1.24 MB

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

41.61 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.24 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

263.55 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.39 MB

iCount summary

input-naive-4reps_grouped_cdna_summary_type.tsv

443 B

input-naive-4reps_grouped_cdna_summary_subtype.tsv

1022 B

input-naive-4reps_grouped_cdna_summary_gene.tsv

3.37 MB

STAR

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

129.13 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

2.58 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

3.14 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.79 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

45.67 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

17.55 kB

STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

234 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

750.78 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

4.38 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.77 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

0 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

15.43 kB

iCount annotate

input-naive-4reps_grouped_cdna_annotated.bed.gz

12.86 MB

input-naive-4reps_grouped_cdna_annotated.bedgraph

46.05 MB

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

54.59 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.16 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

353.15 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.81 MB

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

150.08 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

2.65 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

3.46 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.79 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

45.36 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

17.79 kB

iCount annotate

input-day1-4Reps_grouped_cdna_annotated.bed.gz

40.45 MB

input-day1-4Reps_grouped_cdna_annotated.bedgraph

154.93 MB

iCount annotate

input-day5-4Reps_grouped_cdna_annotated.bed.gz

43.17 MB

input-day5-4Reps_grouped_cdna_annotated.bedgraph

164.54 MB

PEKA

5mer analysis of input-naive-4reps_grouped_cdna.tar.gz

973.52 kB

PEKA

5mer analysis of input-day1-4Reps_grouped_cdna.tar.gz

1.24 MB

iCount xlsites

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

71.20 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

322.84 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

72.19 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

254.11 kB

iCount xlsites

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.25 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

205.89 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

932.37 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

208.92 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

777.86 kB

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

50.83 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.26 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

320.30 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.45 MB

iCount xlsites

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

59.92 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

275.91 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

60.79 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

210.38 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

10.69 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

54.22 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

10.85 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

34.86 kB

FASTQ file (CLIP)

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju.fastq.gz

72.55 MB

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419.69 kB

iCount xlsites

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4.36 kB

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3.90 MB

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8.80 MB

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4.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

18.52 MB

iCount xlsites

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3.09 kB

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27.36 kB

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126.35 kB

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27.72 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

92.48 kB

Paraclu

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84.55 kB

iCount xlsites

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3.71 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

5.09 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.94 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

24.30 MB

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

54.59 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.16 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

353.13 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.81 MB

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

41.61 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.24 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

263.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.39 MB

STAR

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14.32 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

3.11 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

245.06 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

2.26 MB

STAR

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2.97 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

4.44 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

62.32 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

772.92 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

42.07 kB

STAR

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2.07 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

4.69 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

44.03 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

498.98 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

35.05 kB

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

2.21 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

4.62 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

42.97 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

499.56 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

34.92 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

5.58 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

4.81 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.59 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

22.48 MB

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

50.83 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.26 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

320.31 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.45 MB

iCount xlsites

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3.09 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

598 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

2.55 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

616 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

1.63 kB

iCount xlsites

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3.09 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

1015 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

4.44 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

1.02 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

2.99 kB

STAR

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22.95 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

2.56 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

413.64 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

3.32 MB

iCount xlsites

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3.09 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

109.82 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

552.95 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

111.75 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

399.94 kB

iCount RNA-maps

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

466.83 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

183 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

426 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

189 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

394 B

iCount RNA-maps

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

28.59 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

128.67 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

596.45 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

131.02 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

473.13 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

4.36 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

3.90 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

8.80 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

4.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

18.52 MB

iCount summary

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

623 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

726 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

538.40 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

422.66 kB

Paraclu

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

161 B

iCount summary

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

632 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

873 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

1.05 MB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

3.70 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

5.09 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.94 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

24.30 MB

Paraclu

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

795 B

iCount RNA-maps

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

373.83 kB

iCount summary

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

626 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

735 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

459.59 kB

Paraclu

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

164 B

iCount RNA-maps

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

270.24 kB

Paraclu

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116 B

iCount summary

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

610 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

658 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

238.34 kB

iCount summary

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

608 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

590 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

101.15 kB

Paraclu

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

161 B

iCount summary

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

662 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.29 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

5.57 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

4.81 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.59 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

22.48 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.54 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

661 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.48 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.79 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116.61 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

593.50 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

3.70 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

5.09 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.94 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

24.30 MB

iCount xlsites

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4.36 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

3.90 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

8.80 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

4.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

18.52 MB

iCount xlsites

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3.09 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

1.94 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

9.69 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

1.98 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

8.22 MB

iCount xlsites

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3.35 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

6.95 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

34.31 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

7.06 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

30.91 MB

iCount xlsites

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3.09 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

1.41 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

6.95 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

1.43 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

5.84 MB

Paraclu

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

4.95 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

1.38 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

6.68 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

1.41 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

5.71 MB

iCount summary

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

669 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

Paraclu

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

83.73 kB

iCount summary

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

584 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

506 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

5.36 kB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju.fastq.gz

72.55 MB

stderr.txt

1.71 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_fastqc.zip

419.69 kB

Paraclu

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

117 B

iCount summary

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

571 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

492 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

9.59 kB

Paraclu

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

117 B

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

5.57 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

4.81 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.59 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

22.48 MB

iCount summary

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

627 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

796 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

711.88 kB

Paraclu

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

180 B

iCount summary

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

340 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

165 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

528 B

PEKA

4mer analysis of input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

178 B

iCount RNA-maps

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

2.22 MB

iCount summary

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

627 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

668 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

790.53 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

178 B

Paraclu

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

236 B

Paraclu

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

84.55 kB

iCount summary

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

664 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.48 MB

iCount xlsites

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.53 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

11.88 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

56.03 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

12.06 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

53.86 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116.61 kB

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

589.47 kB

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

iCount summary

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

668 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.59 MB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

599.85 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

580.79 kB

iCount summary

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

663 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.48 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.79 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

84.55 kB

iCount summary

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

656 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

963 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.55 MB

Paraclu

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

9.71 kB

PEKA

4mer analysis of input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

387.41 kB

Paraclu

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

103.12 kB

iCount summary

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

663 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

3.45 MB

Paraclu

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

77.95 kB

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

357.44 kB

iCount summary

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

650 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

957 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.31 MB

iCount summary

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

652 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.32 MB

iCount RNA-maps

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

834.78 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

iCount summary

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

669 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

600.61 kB

iCount summary

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

668 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

3.83 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

587.33 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

594.25 kB

Upload iCount sample annotation

iclip_annotation_PM19060_new.xlsx

19.44 kB

iclip_annotation_PM19060_new.tab.gz

774 B

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

546.79 kB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

599.74 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

219 B

FASTQ file (CLIP)

demux_nomatch.fastq.gz

14.33 GB

fastqc

Directory

demux_nomatch_fastqc.zip

589.80 kB

FASTQ file (single-end)

CAP325A1-A67_S71_L008_R1_001.fastq.gz

11.63 GB

fastqc

Directory

stderr.txt

1.21 kB

CAP325A1-A67_S71_L008_R1_001_fastqc.zip

504.62 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

701 B

FASTQ file (single-end)

GAM684A2-A37_S31_L003_R1_001.fastq.gz

16.65 GB

fastqc

Directory

stderr.txt

1.21 kB

GAM684A2-A37_S31_L003_R1_001_fastqc.zip

505.43 kB

Upload iCount sample annotation

iclip_annotation_PM20022_new.xlsx

12.14 kB

iclip_annotation_PM20022_new.tab.gz

1.07 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-xl-polya-20190312-ju.fastq.gz

594.73 MB

fastqc

Directory

m6a-cd8-t-cells-xl-polya-20190312-ju_fastqc.zip

427.84 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju.fastq.gz

144.22 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_fastqc.zip

448.34 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju.fastq.gz

114.31 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_fastqc.zip

460.42 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju.fastq.gz

147.93 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_fastqc.zip

450.55 kB

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single.tar.gz

3.10 MB

PEKA

4mer analysis of m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.tar.gz

710.82 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju.fastq.gz

90.88 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_fastqc.zip

455.51 kB

iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.fastq.gz

108.18 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.14 MB

Paraclu

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

39.32 kB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single.tar.gz

2.20 MB

FASTQ file (CLIP)

m6a-cd8-t-cells-xl-polya-20190110-ju.fastq.gz

181.18 MB

fastqc

Directory

m6a-cd8-t-cells-xl-polya-20190110-ju_fastqc.zip

477.53 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju.fastq.gz

93.73 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_fastqc.zip

451.94 kB

iCLIP reads proxy

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.fastq.gz

171.17 MB

fastqc

Directory

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju.fastq.gz

49.51 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_fastqc.zip

463.58 kB

PEKA

4mer analysis of m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.tar.gz

548.02 kB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.29 MB

Cutadapt (single-end)

report.txt

672 B

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.fastq.gz

590.32 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

691 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.fastq.gz

146.62 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

690 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.fastq.gz

88.45 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.fastq.gz

109.16 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

691 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

143.90 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

691 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

88.74 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

689 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

48.85 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

674 B

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed.fastq.gz

173.34 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

145.51 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam

180.53 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bw

105.93 kB

STAR

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

171.17 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed.bam

210.91 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed.bw

106.01 kB

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

87.66 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam

109.60 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bw

105.80 kB

iCount xlsites

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

51.56 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

107.53 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

55.76 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

222 B

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

108.18 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam

136.44 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bw

105.94 kB

STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

143.12 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam

178.04 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bw

106.10 kB

STAR

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

34.07 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.bam.bai

3.69 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.bam

195.98 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.33 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.bw

29.60 kB

STAR

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

86.54 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam

113.15 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bw

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iCount xlsites

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_skipped.bam

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m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single.bed.gz

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m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

5.59 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

3.43 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single.bedgraph

13.77 MB

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.39 MB

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

47.46 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam

61.25 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bw

106.02 kB

iCount xlsites

m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

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m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

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m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

124.58 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

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m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

222 B

iCLIP reads proxy

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.fastq.gz

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fastqc

Directory

Paraclu

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iCount xlsites

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

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m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

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m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

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m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

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m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCount summary

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

659 B

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

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m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.14 MB

iCLIP reads proxy

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.fastq.gz

145.51 MB

fastqc

Directory

PEKA

5mer analysis of m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.tar.gz

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iCLIP reads proxy

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.fastq.gz

87.66 MB

fastqc

Directory

iCount xlsites

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m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

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m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

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m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

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m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

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iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

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m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

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m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

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m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

31.59 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

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m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

50.50 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

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m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

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m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

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iCLIP reads proxy

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.fastq.gz

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fastqc

Directory

iCount xlsites

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m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

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m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

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m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

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iCLIP reads proxy

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.fastq.gz

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fastqc

Directory

iCount xlsites

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

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m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

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m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

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m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

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iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.fastq.gz

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fastqc

Directory

STAR

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m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.bam.bai

3.75 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.bam

640.61 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_stats.txt

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m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_SJ.out.tab

3.87 MB

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

23.96 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.bam.bai

3.51 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.bam

163.66 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_stats.txt

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m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_SJ.out.tab

1.38 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.bw

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STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

19.28 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.bam.bai

3.26 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.bam

99.31 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_SJ.out.tab

913.60 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.bw

23.28 kB

STAR

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21.94 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.bam.bai

3.59 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.bam

144.87 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_SJ.out.tab

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m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.bw

26.81 kB

STAR

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24.45 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.bam.bai

3.74 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.bam

208.89 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_SJ.out.tab

2.51 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.bw

37.03 kB

STAR

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17.61 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.bam.bai

3.71 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.bam

140.07 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_SJ.out.tab

1.83 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.bw

31.56 kB

STAR

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10.12 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.bam.bai

3.25 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.bam

71.29 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_SJ.out.tab

1.26 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.bw

25.79 kB

iCount xlsites

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15.68 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

23.22 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

17.13 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single.bedgraph

77.11 MB

iCount xlsites

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m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

3.66 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single.bedgraph

15.01 MB

iCount xlsites

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m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single.bed.gz

1.80 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

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m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

2.09 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single.bedgraph

8.37 MB

iCount xlsites

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m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single.bed.gz

2.21 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

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m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

2.56 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single.bedgraph

10.27 MB

iCount xlsites

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3.42 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bed.gz

7.68 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

12.73 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

8.15 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bedgraph

37.74 MB

iCount xlsites

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4.73 MB

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8.33 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

5.05 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bedgraph

22.98 MB

iCount xlsites

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3.48 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bed.gz

2.66 MB

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4.47 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

2.86 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bedgraph

12.70 MB

iCount summary

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

678 B

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.79 MB

Paraclu

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

595.39 kB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.42 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

660 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

975 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.10 MB

iCount summary

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

650 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

969 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

1.89 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

71.00 kB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.09 MB

iCount summary

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

665 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

976 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.01 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

35.42 kB

iCount summary

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

667 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.47 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

240.71 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

661 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.25 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.73 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

119.44 kB

iCount summary

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

651 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.01 MB

Paraclu

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

54.89 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

1.29 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.tar.gz

563.37 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-donor9-20200123-ju.fastq.gz

279.25 MB

fastqc

Directory

m6a-cd8-t-cells-day1-donor9-20200123-ju_fastqc.zip

413.38 kB

PEKA

5mer analysis of m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.tar.gz

1.20 MB

FASTQ file (CLIP)

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju.fastq.gz

169.91 MB

fastqc

Directory

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_fastqc.zip

410.89 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.tar.gz

506.33 kB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.tar.gz

534.67 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.tar.gz

619.96 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-igg-total-rna-20200123-ju.fastq.gz

10.34 MB

fastqc

Directory

m6a-cd8-t-cells-igg-total-rna-20200123-ju_fastqc.zip

515.20 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-naive-donor8-20200123-ju.fastq.gz

178.43 MB

fastqc

Directory

m6a-cd8-t-cells-naive-donor8-20200123-ju_fastqc.zip

411.86 kB

FASTQ file (CLIP)

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju.fastq.gz

35.24 MB

fastqc

Directory

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_fastqc.zip

415.87 kB

FASTQ file (CLIP)

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju.fastq.gz

149.83 MB

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_fastqc.zip

410.06 kB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.tar.gz

526.89 kB

FASTQ file (CLIP)

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju.fastq.gz

55.06 MB

fastqc

Directory

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_fastqc.zip

418.01 kB

FASTQ file (CLIP)

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju.fastq.gz

33.68 MB

fastqc

Directory

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_fastqc.zip

418.10 kB

PEKA

5mer analysis of m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.tar.gz

1.14 MB

PEKA

4mer analysis of input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

624.27 kB

PEKA

4mer analysis of input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

527.29 kB

iCount RNA-maps

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

1.60 MB

PEKA

4mer analysis of input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

476.68 kB

FASTQ file (CLIP)

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju.fastq.gz

153.03 MB

fastqc

Directory

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_fastqc.zip

411.23 kB

iCLIP reads proxy

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

152.83 MB

fastqc

Directory

iCount summary

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

669 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

3.50 MB

PEKA

4mer analysis of input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

618.59 kB

Paraclu

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

322.83 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

2.94 MB

iCLIP reads proxy

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

35.53 MB

fastqc

Directory

iCount RNA-maps

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

1.55 MB

Paraclu

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

39.76 kB

PEKA

4mer analysis of input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

478.38 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-donor8-20200123-ju.fastq.gz

246.53 MB

fastqc

Directory

m6a-cd8-t-cells-day5-donor8-20200123-ju_fastqc.zip

411.55 kB

Cutadapt (single-end)

report.txt

675 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.fastq.gz

253.27 MB

fastqc

Directory

iCLIP reads proxy

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.fastq.gz

249.73 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.tar.gz

2.34 MB

Cutadapt (single-end)

report.txt

675 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.fastq.gz

286.53 MB

fastqc

Directory

iCLIP reads proxy

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome.fastq.gz

284.52 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single.tar.gz

2.99 MB

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-donor8-20200123-ju.fastq.gz

432.43 MB

fastqc

Directory

m6a-cd8-t-cells-day1-donor8-20200123-ju_fastqc.zip

408.55 kB

iCLIP reads proxy

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome.fastq.gz

440.50 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single.tar.gz

3.01 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome.tar.gz

700.95 kB

Cutadapt (single-end)

report.txt

676 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.fastq.gz

182.85 MB

fastqc

Directory

iCLIP reads proxy

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.fastq.gz

181.29 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single.tar.gz

1.99 MB

PEKA

4mer analysis of m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.tar.gz

607.07 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-xl-polya-rna-20200123-ju.fastq.gz

272.00 MB

fastqc

Directory

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_fastqc.zip

414.97 kB

iCount summary

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single_summary_type.tsv

671 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

Paraclu

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single_peaks.bed.gz

419.81 kB

iCount RNA-maps

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single.tar.gz

487.47 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.tar.gz

576.86 kB

FASTQ file (CLIP)

demux_nomatch.fastq.gz

10.35 GB

fastqc

Directory

demux_nomatch_fastqc.zip

511.15 kB

Cutadapt (single-end)

report.txt

691 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

74.44 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

174.21 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

691 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

56.51 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

34.55 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

156.88 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

36.18 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.fastq.gz

153.62 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

675 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.fastq.gz

443.84 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

677 B

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.fastq.gz

9.42 MB

fastqc

Directory

Cutadapt (single-end)

report.txt

676 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.fastq.gz

279.29 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

72.21 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bam

94.35 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.35 kB

STAR

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

172.13 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bam

220.09 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.57 kB

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

55.81 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bam

71.95 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.13 kB

STAR

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

34.01 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bam

43.92 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.03 kB

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

35.53 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bam

46.13 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.06 kB

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

152.83 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bam

198.92 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.66 kB

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

151.56 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bam

194.59 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bw

105.53 kB

iCLIP reads proxy

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

151.56 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

181.29 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bam

211.71 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bw

105.56 kB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

249.73 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam

290.41 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bw

105.49 kB

STAR

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

6.19 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bam.bai

20.07 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bam

10.88 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bw

105.40 kB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

284.52 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bam

335.31 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bw

105.74 kB

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

275.93 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bam

318.21 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bw

105.62 kB

STAR

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

440.50 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bam

514.08 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bw

105.77 kB

iCount xlsites

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

59.95 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

85.16 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

60.52 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

72.21 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

72.22 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

107.10 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

72.86 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

172.13 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

51.26 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

70.68 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

51.72 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

55.81 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

43.78 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

61.16 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

44.19 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

34.01 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

47.57 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

64.68 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

47.95 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCount xlsites

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

74.28 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

108.99 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

74.85 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

73.35 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

104.01 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

74.18 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_single.bed.gz

37.29 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

52.20 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

39.19 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_single.bedgraph

228 B

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_single.bed.gz

40.76 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

53.76 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

42.79 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_single.bedgraph

226 B

iCount xlsites

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_single.bed.gz

36.21 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

45.35 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

38.01 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_single.bedgraph

230 B

iCLIP reads proxy

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.fastq.gz

6.19 MB

fastqc

Directory

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_single.bed.gz

57.97 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

98.72 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

59.22 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_single.bedgraph

226 B

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_single.bed.gz

48.48 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

69.49 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

49.71 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_single.bedgraph

230 B

iCLIP reads proxy

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome.fastq.gz

275.93 MB

fastqc

Directory

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_single.bed.gz

49.82 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

74.09 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

52.13 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_single.bedgraph

226 B

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

7.29 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.70 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam

166.45 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

2.42 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bw

48.68 kB

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

5.35 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.83 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam

132.97 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

2.11 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bw

44.15 kB

STAR

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

16.99 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam

383.90 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

3.56 MB

STAR

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

3.77 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

4.09 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam

77.38 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

1.49 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bw

34.70 kB

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

4.28 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

4.12 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam

86.91 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

1.42 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bw

39.05 kB

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

17.34 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.01 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam

349.90 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

3.56 MB

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

17.68 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.09 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome.bam

345.86 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

3.36 MB

STAR

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

18.73 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.bam.bai

3.08 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.bam

192.83 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.bw

29.19 kB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

22.74 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.bam.bai

3.06 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.bam

260.75 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_SJ.out.tab

2.94 MB

STAR

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

2.57 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.bam.bai

2.10 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.bam

10.46 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_stats.txt

1.80 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_SJ.out.tab

166.25 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.bw

20.16 kB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

31.73 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome.bam.bai

3.67 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome.bam

357.33 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_SJ.out.tab

3.69 MB

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

28.38 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome.bam.bai

3.22 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome.bam

309.99 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_SJ.out.tab

3.78 MB

STAR

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

44.85 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome.bam.bai

3.56 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome.bam

467.18 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_stats.txt

1.82 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_SJ.out.tab

3.78 MB

iCount summary

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

468 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.70 MB

iCount summary

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

474 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

2.09 MB

iCount summary

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

480 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

2.48 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

iCount xlsites

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

7.33 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

17.37 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

7.50 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

34.97 MB

iCount RNA-maps

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

2.22 MB

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.42 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

6.43 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

15.14 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

6.59 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

30.37 MB

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_skipped.bam

3.93 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_singleAndMulti.bed.gz

52.21 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_reads_single.bed.gz

39.17 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_single.bed.gz

37.23 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_single.bedgraph

228 B

iCount xlsites

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.24 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

3.92 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

8.74 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

4.03 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

18.32 MB

Paraclu

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

41.49 kB

iCount xlsites

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.55 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

15.70 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

35.12 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

16.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

75.64 MB

Paraclu

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

367.73 kB

iCount xlsites

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_skipped.bam

3.08 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single.bed.gz

174.87 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

451.73 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_reads_single.bed.gz

190.80 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single.bedgraph

678.17 kB

Paraclu

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single_peaks.bed.gz

1.45 kB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_skipped.bam

3.83 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.bed.gz

8.16 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

11.31 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.bedgraph

40.01 MB

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

236.98 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_skipped.bam

4.75 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single.bed.gz

13.97 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

20.27 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_reads_single.bed.gz

14.66 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single.bedgraph

68.98 MB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_skipped.bam

3.94 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single.bed.gz

12.72 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

16.80 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_reads_single.bed.gz

13.44 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single.bedgraph

63.02 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_skipped.bam

5.06 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single.bed.gz

14.26 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

19.80 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_reads_single.bed.gz

15.63 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single.bedgraph

69.86 MB

iCount summary

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

662 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.97 MB

Paraclu

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

143.61 kB

iCount summary

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

666 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.85 MB

iCount RNA-maps

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

2.06 MB

Paraclu

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

103.46 kB

iCount summary

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

662 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.49 MB

iCount summary

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

672 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

3.47 MB

iCount RNA-maps

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

3.12 MB

iCount summary

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

666 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.61 MB

Paraclu

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

344.25 kB

iCount RNA-maps

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

3.05 MB

iCount summary

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

672 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

3.44 MB

iCount summary

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single_summary_type.tsv

666 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.25 MB

Paraclu

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

148.64 kB

iCount summary

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single_summary_type.tsv

638 B

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

943 B

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single_summary_gene.tsv

996.75 kB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_type.tsv

673 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.33 MB

iCount summary

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single_summary_type.tsv

675 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.66 MB

Paraclu

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single_peaks.bed.gz

459.69 kB

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single.tar.gz

2.89 MB

iCount summary

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single_summary_type.tsv

672 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.66 MB

Paraclu

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

442.87 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

542.45 kB

PEKA

4mer analysis of m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.tar.gz

217.26 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.tar.gz

640.33 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome.tar.gz

681.29 kB

PEKA

4mer analysis of m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome.tar.gz

675.94 kB

PEKA

4mer analysis of input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

611.87 kB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single_summary_type.tsv

480 B

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.59 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

Paraclu

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_peaks.bed.gz

666.28 kB

PEKA

5mer analysis of m6a-cd8-t-cells-day5-group-4reps_grouped_cdna.tar.gz

1.22 MB

iCount RNA-maps

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna.tar.gz

2.82 MB

iCount group

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna.bed.gz

29.19 MB

m6a-cd8-t-cells-day1-group-4reps_grouped_reads.bed.gz

31.37 MB

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna.bedgraph

142.44 MB

iCount group

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna.bed.gz

19.50 MB

m6a-cd8-t-cells-day5-group-4reps_grouped_reads.bed.gz

21.54 MB

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna.bedgraph

95.28 MB

iCount group

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna.bed.gz

13.59 MB

m6a-cd8-t-cells-naive-group-4reps_grouped_reads.bed.gz

15.26 MB

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna.bedgraph

65.60 MB

iCount annotate

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_annotated.bed.gz

37.00 MB

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_annotated.bedgraph

142.44 MB

iCount summary

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_summary_type.tsv

448 B

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_summary_subtype.tsv

1.02 kB

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_summary_gene.tsv

3.27 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna.tar.gz

4.23 MB

Paraclu

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_peaks.bed.gz

996.52 kB

iCount annotate

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_annotated.bed.gz

25.12 MB

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_annotated.bedgraph

95.28 MB

iCount summary

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_summary_type.tsv

445 B

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_summary_subtype.tsv

1.01 kB

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_summary_gene.tsv

3.12 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna.tar.gz

3.48 MB

iCount annotate

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_annotated.bed.gz

17.66 MB

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_annotated.bedgraph

65.60 MB

iCount summary

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_summary_type.tsv

443 B

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_summary_subtype.tsv

1.01 kB

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_summary_gene.tsv

2.96 MB

Paraclu

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_peaks.bed.gz

380.96 kB

PEKA

5mer analysis of m6a-cd8-t-cells-naive-group-4reps_grouped_cdna.tar.gz

1.17 MB

PEKA

5mer analysis of m6a-cd8-t-cells-day1-group-4reps_grouped_cdna.tar.gz

1.31 MB

Paraclu

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single_peaks.bed.gz

456.13 kB

Upload iCount sample annotation

iclip_annotation_PM18271_new3_CORRECT_NoXL.xlsx

11.26 kB

iclip_annotation_PM18271_new3_CORRECT_NoXL.tab.gz

646 B

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single.tar.gz

2.89 MB

Paraclu

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single_peaks.bed.gz

416.54 kB

Upload iCount sample annotation

iclip_annotation_PM18271_new3_CORRECT.xlsx

12.31 kB

iclip_annotation_PM18271_new3_CORRECT.tab.gz

1006 B

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.fastq.gz

181.29 MB

stderr.txt

1.75 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_fastqc.zip

411.98 kB

iCount reads proxy

fastqc

Directory

stderr.txt

1.68 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_fastqc.zip

603.25 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped.fastq.gz

553.08 kB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-rtneg-only-polya-20190110-ju.fastq.gz

891.23 kB

stderr.txt

1.50 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_fastqc.zip

550.71 kB

iCount xlsites

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_singleAndMulti.bed.gz

5.62 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single.bed.gz

3.01 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single.bedgraph

240 B

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_skipped.bam

3.96 kB

STAR

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped.bam.bai

3.56 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped.bam

231.13 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

31.75 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_SJ.out.tab

1.32 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped.bw

29.77 kB

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

41.13 MB

report.txt

721 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip

448.07 kB

iCount summary

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single_summary_subtype.tsv

646 B

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single_summary_gene.tsv

1.01 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single_summary_type.tsv

269 B

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

14.51 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped.bam.bai

3.16 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped.bam

124.60 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

953.22 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped.bw

24.35 kB

Paraclu

peaks.bed.gz

38.12 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

2.06 MB

iCount RNA-maps

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

1.60 MB

Paraclu

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

41.36 kB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_fastqc.zip

411.23 kB

stderr.txt

1.71 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju.fastq.gz

153.03 MB

iCount summary

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.80 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.01 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

470 B

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

72.21 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.35 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bam

94.34 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bam

71.95 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

55.81 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.13 kB

iCount reads proxy

fastqc

Directory

stderr.txt

2.05 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

34.01 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

419.72 kB

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

47.55 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

64.66 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

47.93 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

262 B

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single_peaks.bed.gz

231.29 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.42 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju.fastq.gz

432.43 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_fastqc.zip

408.55 kB

iCount RNA-maps

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single.tar.gz

3.00 MB

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam

166.45 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.70 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

7.29 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

2.42 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bw

48.68 kB

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

5.35 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.83 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam

132.97 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

2.11 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bw

44.15 kB

STAR

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

16.99 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam

383.89 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

3.56 MB

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam

349.90 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

17.34 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.01 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

3.56 MB

Cutadapt (single-end)

report.txt

675 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.fastq.gz

443.84 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.23 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

6.43 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

15.13 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

6.59 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

30.37 MB

STAR

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

181.29 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bam

211.71 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bw

105.56 kB

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

275.93 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bam

318.21 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bw

105.62 kB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

22.74 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped.bam.bai

3.06 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped.bam

260.75 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_SJ.out.tab

2.94 MB

STAR

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

18.73 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.bam.bai

3.08 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.bam

192.85 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.bw

29.19 kB

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.bam.bai

3.22 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.bam

309.98 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_SJ.out.tab

3.78 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

28.38 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single.bed.gz

13.96 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

20.26 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_skipped.bam

4.57 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single.bedgraph

68.98 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_reads_single.bed.gz

14.66 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_skipped.bam

3.64 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

11.29 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single.bedgraph

40.01 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single.bed.gz

8.13 MB

iCount summary

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single_summary_type.tsv

474 B

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.53 MB

K-mers

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped.tar.gz

512.30 kB

K-mers

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped.tar.gz

479.53 kB

Paraclu

peaks.bed.gz

239.37 kB

iCount RNA-maps

results.tar.gz

1.39 MB

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped.fastq.gz

168.57 MB

stderr.txt

1.73 kB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_fastqc.zip

449.97 kB

Paraclu

peaks.bed.gz

54.13 kB

iCount xlsites

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single.bed.gz

44.94 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_singleAndMulti.bed.gz

84.48 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single.bedgraph

226 B

iCount xlsites

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_skipped.bam

4.48 kB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single.bedgraph

13.84 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_singleAndMulti.bed.gz

5.40 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single.bed.gz

2.93 MB

iCount summary

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single_summary_type.tsv

252 B

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single_summary_subtype.tsv

374 B

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single_summary_gene.tsv

12.64 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

708 B

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.fastq.gz

170.63 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_fastqc.zip

449.69 kB

STAR

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

503.03 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bam.bai

1.53 MB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bam

1.31 MB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_SJ.out.tab

2.17 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bw

18.04 kB

STAR

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

168.57 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bam

245.38 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bw

105.68 kB

K-mers

kmer_frequency_utr3.tsv

5.78 kB

positional_distribution_genome.tsv

567.12 kB

other_exon region.png

234.67 kB

positional_distribution_intron.tsv

194.89 kB

intron region.png

189.90 kB

kmer_frequency_ncRNA.tsv

5.70 kB

kmer_frequency_other_exon.tsv

5.82 kB

ncRNA region.png

272.15 kB

kmer_frequency_intron.tsv

5.21 kB

utr3 region.png

305.06 kB

kmer_frequency_genome.tsv

5.88 kB

positional_distribution_ncRNA.tsv

301.99 kB

positional_distribution_other_exon.tsv

555.92 kB

positional_distribution_utr3.tsv

520.11 kB

genome region.png

282.92 kB

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

41.32 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam

58.30 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam.bai

17.68 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bw

104.12 kB

K-mers

positional_distribution_intron.tsv

256.55 kB

other_exon region.png

177.96 kB

kmer_frequency_intron.tsv

5.70 kB

ncRNA region.png

301.60 kB

positional_distribution_ncRNA.tsv

368.10 kB

intron region.png

264.88 kB

kmer_frequency_ncRNA.tsv

5.88 kB

kmer_frequency_other_exon.tsv

5.83 kB

kmer_frequency_utr3.tsv

5.89 kB

kmer_frequency_genome.tsv

5.81 kB

positional_distribution_genome.tsv

555.04 kB

positional_distribution_utr3.tsv

565.32 kB

positional_distribution_other_exon.tsv

566.66 kB

utr3 region.png

241.21 kB

genome region.png

265.02 kB

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

16.48 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped.bam.bai

3.25 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped.bw

27.06 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped.bam

180.09 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

1.37 MB

Cutadapt (single-end)

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.fastq.gz

136.70 MB

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fastqc

Directory

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Cutadapt (single-end)

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Directory

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m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_fastqc.zip

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STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam

219.53 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam.bai

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Cutadapt (single-end)

fastqc

Directory

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m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip

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Cutadapt (single-end)

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73.95 MB

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fastqc

Directory

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426.27 kB

STAR

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m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

10.12 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam

127.57 MB

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iCount xlsites

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FASTQ file (single-end)

fastqc

Directory

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40.97 MB

stderr.txt

1.66 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_fastqc.zip

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iCount xlsites

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m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz

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258 B

FASTQ file (single-end)

fastqc

Directory

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135.58 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_fastqc.zip

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iCount reads proxy

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Directory

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74.39 MB

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m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

420.23 kB

iCount RNA-maps

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1.72 MB

iCount xlsites

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m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

2.65 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

2.85 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_skipped.bam

3.31 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

12.67 MB

iCount xlsites

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1.79 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

3.10 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_skipped.bam

2.93 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

2.08 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

8.35 MB

iCount RNA-maps

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1.09 MB

FASTQ file (single-end)

fastqc

Directory

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94.08 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_fastqc.zip

447.26 kB

stderr.txt

1.71 kB

FASTQ file (single-end)

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131.26 MB

fastqc

Directory

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iCount reads proxy

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Directory

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132.64 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

415.81 kB

stderr.txt

2.08 kB

FASTQ file (single-end)

fastqc

Directory

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73.55 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_fastqc.zip

424.87 kB

stderr.txt

1.76 kB

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam

197.17 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

136.83 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam.bai

20.28 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_SJ.out.tab

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m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bw

104.80 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_stats.txt

1.78 kB

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam.bai

17.96 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

77.89 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam

111.54 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_SJ.out.tab

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m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bw

104.36 kB

STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.49 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam

190.59 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_stats.txt

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m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

132.64 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bw

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iCount RNA-maps

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Cutadapt (single-end)

fastqc

Directory

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input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.fastq.gz

589.38 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_fastqc.zip

608.62 kB

STAR

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553.08 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_stats.txt

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input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bam.bai

13.04 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bam

972.15 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bw

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input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_SJ.out.tab

0 B

iCount RNA-maps

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iCount summary

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14.24 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single_summary_type.tsv

253 B

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single_summary_subtype.tsv

360 B

iCount RNA-maps

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Paraclu

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iCount xlsites

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input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single.bed.gz

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input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single.bedgraph

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STAR

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1.52 MB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped.bam

1.02 MB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

493.21 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_SJ.out.tab

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16.02 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_stats.txt

1.78 kB

input_CD8 T cells_Day1_Donor9_polyARNA_(m6A)_20200123_JU

FASTQ file (CLIP)

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169.91 MB

fastqc

Directory

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410.89 kB

PEKA

4mer analysis of input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

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Cutadapt (single-end)

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174.21 MB

fastqc

Directory

STAR

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172.13 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bam

220.09 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.57 kB

iCount xlsites

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4.11 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

72.22 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

107.10 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

72.86 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

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172.13 MB

fastqc

Directory

STAR

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16.99 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam

383.90 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

3.56 MB

iCount xlsites

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

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input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

15.70 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

35.12 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

16.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

75.64 MB

Paraclu

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

367.73 kB

iCount summary

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

672 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

3.47 MB

iCount RNA-maps

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

3.12 MB

m6A_CD8 T cells_Day5_Donor8_20200123_JU

Cutadapt (single-end)

fastqc

Directory

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675 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.fastq.gz

253.27 MB

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-donor8-20200123-ju.fastq.gz

246.53 MB

fastqc

Directory

m6a-cd8-t-cells-day5-donor8-20200123-ju_fastqc.zip

411.55 kB

iCLIP reads proxy

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.fastq.gz

249.73 MB

fastqc

Directory

iCount RNA-maps

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2.34 MB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

249.73 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam

290.41 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bw

105.49 kB

iCount xlsites

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4.10 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_single.bed.gz

40.76 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

53.76 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

42.79 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_premapped_to_ncRNAs_single.bedgraph

226 B

STAR

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22.74 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.bam.bai

3.06 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.bam

260.75 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_SJ.out.tab

2.94 MB

iCount xlsites

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3.83 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.bed.gz

8.16 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

11.31 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.bedgraph

40.01 MB

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

236.98 kB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_type.tsv

673 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.33 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.tar.gz

640.33 kB

input_CD8 T cells_Day1_Donor9b_polyARNA_(m6A)_20200123_JU

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.63 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

13.92 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

33.27 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

14.18 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

66.81 MB

FASTQ file (CLIP)

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju.fastq.gz

149.83 MB

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_fastqc.zip

410.06 kB

Paraclu

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

322.83 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

2.94 MB

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.fastq.gz

153.62 MB

fastqc

Directory

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

151.56 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bam

194.59 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bw

105.53 kB

iCLIP reads proxy

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

151.56 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

73.35 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

104.01 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

74.18 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

262 B

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

17.68 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.09 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome.bam

345.86 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

3.36 MB

iCount summary

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

672 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

3.44 MB

PEKA

4mer analysis of input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

611.87 kB

m6A_CD8 T cells_Day1_Donor8_20200123_JU

Cutadapt (single-end)

report.txt

675 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.fastq.gz

443.84 MB

fastqc

Directory

iCount summary

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.05 kB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single_summary_type.tsv

481 B

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.85 MB

Paraclu

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single_peaks.bed.gz

434.58 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_reads_single.bed.gz

15.63 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_skipped.bam

4.88 kB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

19.76 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single.bed.gz

14.22 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single.bedgraph

69.86 MB

STAR

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

44.85 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped.bam

467.18 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped.bam.bai

3.57 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_SJ.out.tab

3.78 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_stats.txt

1.82 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_reads_single.bed.gz

52.18 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_skipped.bam

3.93 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_singleAndMulti.bed.gz

74.01 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_single.bed.gz

49.79 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_single.bedgraph

226 B

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped.fastq.gz

440.50 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_fastqc.zip

408.87 kB

stderr.txt

1.73 kB

STAR

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

440.50 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bam

514.08 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bw

105.77 kB

K-mers

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped.tar.gz

516.18 kB

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed.fastq.gz

440.50 MB

report.txt

693 B

STAR

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed.bam

467.19 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.78 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.82 kB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

44.85 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.57 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

4.96 kB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

14.26 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

15.63 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

69.86 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

19.80 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

3.01 MB

iCount summary

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.85 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

445 B

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

442.89 kB

PEKA

6mer analysis of m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

4.52 MB

iCount peaks

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

4.92 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_scores.tsv.gz

11.67 MB

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bedgraph

22.48 MB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.42 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju.fastq.gz

432.43 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_fastqc.zip

408.55 kB

iCount RNA-maps

m6a-cd8-t-cells-day1-donor8-20200123-jufastqgz_unmapped_single.tar.gz

3.00 MB

m6A_CD8 T cells_Non-activated_Donors5&6_polyA_20190312_JU

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.14 MB

Cutadapt (single-end)

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

94.75 MB

report.txt

713 B

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam

136.30 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam.bai

19.44 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

94.65 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bw

104.59 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_SJ.out.tab

0 B

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped.fastq.gz

94.65 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

448.14 kB

stderr.txt

2.12 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_skipped.bam

3.77 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

2.55 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

10.22 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

2.19 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

3.78 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

24.06 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_reads_single.bed.gz

20.01 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bed.gz

18.53 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bedgraph

262 B

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

14.52 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

102.42 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

24.35 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

953.22 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

3.15 MB

iCount summary

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

469 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.33 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

2.19 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

3.82 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

2.55 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

3.78 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

10.22 MB

iCount summary

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.32 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

946 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

436 B

Paraclu

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

38.36 kB

iCount RNA-maps

results.tar.gz

1.14 MB

PEKA

6mer analysis of m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

2.95 MB

iCount peaks

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

411.46 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

2.00 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

1.48 MB

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

14.51 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped.bam.bai

3.16 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped.bam

124.60 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

953.22 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-5_unmapped.bw

24.35 kB

Paraclu

peaks.bed.gz

38.12 kB

K-mers

kmer_frequency_utr3.tsv

5.78 kB

positional_distribution_genome.tsv

567.12 kB

other_exon region.png

234.67 kB

positional_distribution_intron.tsv

194.89 kB

intron region.png

189.90 kB

kmer_frequency_ncRNA.tsv

5.70 kB

kmer_frequency_other_exon.tsv

5.82 kB

ncRNA region.png

272.15 kB

kmer_frequency_intron.tsv

5.21 kB

utr3 region.png

305.06 kB

kmer_frequency_genome.tsv

5.88 kB

positional_distribution_ncRNA.tsv

301.99 kB

positional_distribution_other_exon.tsv

555.92 kB

positional_distribution_utr3.tsv

520.11 kB

genome region.png

282.92 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

724 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.fastq.gz

94.15 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_fastqc.zip

446.33 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju.fastq.gz

94.08 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_fastqc.zip

447.26 kB

stderr.txt

1.71 kB

m6A_Day1_Group_5Reps

PEKA

6mer analysis of m6A_Day1_Group_5Reps_grouped_cdna.tar.gz

5.23 MB

iCount group

m6A_Day1_Group_5Reps_grouped_reads.bed.gz

30.52 MB

m6A_Day1_Group_5Reps_grouped_cdna.bed.gz

28.52 MB

m6A_Day1_Group_5Reps_grouped_cdna.bedgraph

139.07 MB

iCount annotate

m6A_Day1_Group_5Reps_grouped_cdna_annotated.bedgraph

139.07 MB

m6A_Day1_Group_5Reps_grouped_cdna_annotated.bed.gz

36.20 MB

Paraclu

m6A_Day1_Group_5Reps_grouped_cdna_peaks.bed.gz

962.56 kB

iCount RNA-maps

m6A_Day1_Group_5Reps_grouped_cdna.tar.gz

4.19 MB

iCount summary

m6A_Day1_Group_5Reps_grouped_cdna_summary_subtype.tsv

1.02 kB

m6A_Day1_Group_5Reps_grouped_cdna_summary_type.tsv

450 B

m6A_Day1_Group_5Reps_grouped_cdna_summary_gene.tsv

2.31 MB

input_CD8 T cells_Day5_Donor8_polyARNA_(m6A)_20200123_JU

Cutadapt (single-end)

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

72.21 MB

report.txt

707 B

K-mers

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

425.68 kB

iCount xlsites

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

7.33 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

7.50 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

2.90 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

17.37 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

34.97 MB

iCount xlsites

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

60.56 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

85.21 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

59.96 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

260 B

iCount reads proxy

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

72.21 MB

stderr.txt

2.03 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

419.19 kB

Cutadapt (single-end)

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

74.44 MB

report.txt

691 B

Paraclu

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

143.28 kB

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.70 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

166.45 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.42 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bw

48.68 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

7.29 MB

iCount xlsites

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

34.97 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

7.33 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

2.98 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

17.37 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

7.50 MB

iCount RNA-maps

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.22 MB

iCount summary

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1019 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

2.08 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

436 B

Paraclu

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

143.62 kB

PEKA

6mer analysis of input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.09 MB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju.fastq.gz

72.55 MB

stderr.txt

1.71 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_fastqc.zip

419.69 kB

iCount RNA-maps

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

2.22 MB

iCount summary

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

474 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

2.09 MB

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

72.21 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.35 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bam

94.34 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam

166.45 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.70 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

7.29 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

2.42 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bw

48.68 kB

m6A_Day5_Group_4Reps

iCount RNA-maps

m6A_Day5_Group_4Reps_grouped_cdna.tar.gz

3.19 MB

Paraclu

m6A_Day5_Group_4Reps_grouped_cdna_peaks.bed.gz

552.08 kB

PEKA

6mer analysis of m6A_Day5_Group_4Reps_grouped_cdna.tar.gz

4.65 MB

iCount group

m6A_Day5_Group_4Reps_grouped_cdna.bedgraph

79.39 MB

m6A_Day5_Group_4Reps_grouped_reads.bed.gz

17.65 MB

m6A_Day5_Group_4Reps_grouped_cdna.bed.gz

16.18 MB

iCount summary

m6A_Day5_Group_4Reps_grouped_cdna_summary_subtype.tsv

1.02 kB

m6A_Day5_Group_4Reps_grouped_cdna_summary_type.tsv

448 B

m6A_Day5_Group_4Reps_grouped_cdna_summary_gene.tsv

2.04 MB

iCount annotate

m6A_Day5_Group_4Reps_grouped_cdna_annotated.bed.gz

21.02 MB

m6A_Day5_Group_4Reps_grouped_cdna_annotated.bedgraph

79.39 MB

m6A_CD8 T cells_-XL_polyA_RNA_20200123_JU

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.89 MB

Paraclu

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

419.83 kB

iCount summary

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single_summary_type.tsv

479 B

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.71 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

16.79 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_skipped.bam

3.75 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_reads_single.bed.gz

13.44 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single.bedgraph

63.02 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single.bed.gz

12.70 MB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_reads_single.bed.gz

49.68 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_singleAndMulti.bed.gz

69.48 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_single.bedgraph

230 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_single.bed.gz

48.43 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_skipped.bam

3.93 kB

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.fastq.gz

279.29 MB

report.txt

676 B

K-mers

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.tar.gz

505.73 kB

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.fastq.gz

275.93 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_fastqc.zip

413.98 kB

stderr.txt

1.75 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-xl-polya-rna-20200123-ju.fastq.gz

272.00 MB

stderr.txt

1.44 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_fastqc.zip

414.97 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

694 B

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed.fastq.gz

275.93 MB

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.22 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

28.38 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed.bam

309.99 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.78 MB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

16.80 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.84 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

63.02 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

13.44 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

12.72 MB

iCount summary

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

443 B

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.72 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

PEKA

6mer analysis of m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

4.28 MB

PEKA

5mer analysis of m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.tar.gz

1.14 MB

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single.tar.gz

2.89 MB

Paraclu

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_single_peaks.bed.gz

416.54 kB

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

275.93 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bam

318.21 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bw

105.62 kB

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.bam.bai

3.22 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped.bam

309.98 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_SJ.out.tab

3.78 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

28.38 MB

input_CD8 T cells_Day1_Donor8_polyARNA_(m6A)_20200123_JU

PEKA

6mer analysis of input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

2.89 MB

iCount summary

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.99 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

472 B

iCount reads proxy

fastqc

Directory

stderr.txt

2.03 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

55.81 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

419.80 kB

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

260 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

70.67 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

51.25 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

51.69 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

691 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

56.51 MB

K-mers

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

404.36 kB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju.fastq.gz

55.06 MB

stderr.txt

1.71 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_fastqc.zip

418.01 kB

Cutadapt (single-end)

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

55.81 MB

fastqc

Directory

report.txt

707 B

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bw

44.15 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.11 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

5.35 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

132.98 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.83 MB

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

15.14 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

6.43 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

6.59 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.31 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

30.37 MB

iCount RNA-maps

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.06 MB

Paraclu

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

103.47 kB

iCount summary

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

439 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1016 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.99 MB

Paraclu

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

103.12 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

2.06 MB

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bam

71.95 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

55.81 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.13 kB

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

5.35 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.83 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam

132.97 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

2.11 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bw

44.15 kB

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.23 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

6.43 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

15.13 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

6.59 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

30.37 MB

m6A_CD8 T cells_Day1_Donor9_20200123_JU

PEKA

6mer analysis of m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

4.33 MB

iCount summary

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single_summary_type.tsv

483 B

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.84 MB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

31.73 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped.bam.bai

3.67 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_SJ.out.tab

3.69 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped.bam

357.33 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_single.bed.gz

57.94 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_singleAndMulti.bed.gz

98.72 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_skipped.bam

3.93 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_single.bedgraph

226 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_reads_single.bed.gz

59.25 kB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bam

335.31 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bw

105.74 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

284.52 MB

Cutadapt (single-end)

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.fastq.gz

286.53 MB

fastqc

Directory

report.txt

675 B

iCount RNA-maps

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single.tar.gz

2.98 MB

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped.fastq.gz

284.52 MB

stderr.txt

1.73 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_fastqc.zip

413.20 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-day1-donor9-20200123-ju.fastq.gz

279.25 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_fastqc.zip

413.38 kB

stderr.txt

1.42 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

693 B

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed.fastq.gz

284.52 MB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.67 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed.bam

357.32 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

31.73 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.69 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

68.98 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

4.65 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

14.66 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

13.97 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

20.27 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.99 MB

iCount summary

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

445 B

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.84 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

459.70 kB

iCount peaks

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

5.37 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_scores.tsv.gz

11.62 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bedgraph

24.67 MB

Paraclu

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single_peaks.bed.gz

456.13 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single.bed.gz

13.96 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

20.26 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_skipped.bam

4.57 kB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_single.bedgraph

68.98 MB

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped_reads_single.bed.gz

14.66 MB

K-mers

m6a-cd8-t-cells-day1-donor9-20200123-jufastqgz_unmapped.tar.gz

512.30 kB

m6A_CD8 T cells_Day5-activated_Donor4_polyA_20190312_JU

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

7.66 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_skipped.bam

3.25 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

8.13 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

37.69 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

11.97 MB

K-mers

kmer_frequency_ncRNA.tsv

5.89 kB

intron region.png

300.66 kB

kmer_frequency_intron.tsv

5.88 kB

kmer_frequency_genome.tsv

5.90 kB

positional_distribution_intron.tsv

361.25 kB

kmer_frequency_utr3.tsv

5.76 kB

positional_distribution_ncRNA.tsv

495.79 kB

positional_distribution_utr3.tsv

562.33 kB

other_exon region.png

150.57 kB

positional_distribution_genome.tsv

567.64 kB

positional_distribution_other_exon.tsv

562.03 kB

ncRNA region.png

285.04 kB

genome region.png

184.91 kB

utr3 region.png

207.70 kB

kmer_frequency_other_exon.tsv

5.81 kB

iCount summary

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

475 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.69 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

985 B

iCount RNA-maps

results.tar.gz

2.20 MB

Cutadapt (single-end)

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

132.77 MB

report.txt

711 B

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

3.52 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

16.91 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

182.59 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

34.62 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

7.66 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

8.13 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

3.30 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

37.69 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

11.97 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.69 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

440 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

950 B

Paraclu

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

239.86 kB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

2.20 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

3.71 MB

iCount peaks

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

2.43 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

6.48 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

10.82 MB

Paraclu

peaks.bed.gz

239.37 kB

STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam

219.53 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam.bai

3.53 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bw

34.62 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

16.89 MB

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

132.23 MB

report.txt

722 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip

421.23 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz

35.74 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz

36.59 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

45.55 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph

258 B

FASTQ file (single-end)

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju.fastq.gz

131.26 MB

fastqc

Directory

stderr.txt

1.67 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_fastqc.zip

412.85 kB

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped.fastq.gz

132.64 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

415.81 kB

stderr.txt

2.08 kB

STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.49 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam

190.59 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

132.64 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bw

104.79 kB

m6A_Naive_Group_4Reps

iCount RNA-maps

m6A_Naive_Group_4Reps_grouped_cdna.tar.gz

2.66 MB

Paraclu

m6A_Naive_Group_4Reps_grouped_cdna_peaks.bed.gz

318.05 kB

PEKA

6mer analysis of m6A_Naive_Group_4Reps_grouped_cdna.tar.gz

4.87 MB

iCount group

m6A_Naive_Group_4Reps_grouped_cdna.bed.gz

12.34 MB

m6A_Naive_Group_4Reps_grouped_cdna.bedgraph

58.22 MB

m6A_Naive_Group_4Reps_grouped_reads.bed.gz

13.54 MB

iCount summary

m6A_Naive_Group_4Reps_grouped_cdna_summary_gene.tsv

2.05 MB

m6A_Naive_Group_4Reps_grouped_cdna_summary_type.tsv

445 B

m6A_Naive_Group_4Reps_grouped_cdna_summary_subtype.tsv

1.01 kB

iCount annotate

m6A_Naive_Group_4Reps_grouped_cdna_annotated.bed.gz

16.11 MB

m6A_Naive_Group_4Reps_grouped_cdna_annotated.bedgraph

58.22 MB

Input_Naive_Group_4Reps

iCount RNA-maps

Input_Naive_Group_4Reps_grouped_cdna.tar.gz

2.13 MB

Paraclu

Input_Naive_Group_4Reps_grouped_cdna_peaks.bed.gz

104.30 kB

iCount group

Input_Naive_Group_4Reps_grouped_cdna.bed.gz

7.66 MB

Input_Naive_Group_4Reps_grouped_cdna.bedgraph

36.05 MB

Input_Naive_Group_4Reps_grouped_reads.bed.gz

7.85 MB

iCount annotate

Input_Naive_Group_4Reps_grouped_cdna_annotated.bed.gz

10.12 MB

Input_Naive_Group_4Reps_grouped_cdna_annotated.bedgraph

36.05 MB

iCount summary

Input_Naive_Group_4Reps_grouped_cdna_summary_subtype.tsv

1017 B

Input_Naive_Group_4Reps_grouped_cdna_summary_gene.tsv

2.09 MB

Input_Naive_Group_4Reps_grouped_cdna_summary_type.tsv

435 B

PEKA

6mer analysis of Input_Naive_Group_4Reps_grouped_cdna.tar.gz

3.21 MB

Input_Day1_Group_4Reps

iCount RNA-maps

Input_Day1_Group_4Reps_grouped_cdna.tar.gz

4.26 MB

PEKA

6mer analysis of Input_Day1_Group_4Reps_grouped_cdna.tar.gz

4.64 MB

iCount group

Input_Day1_Group_4Reps_grouped_cdna.bedgraph

149.00 MB

Input_Day1_Group_4Reps_grouped_cdna.bed.gz

31.01 MB

Input_Day1_Group_4Reps_grouped_reads.bed.gz

31.52 MB

iCount annotate

Input_Day1_Group_4Reps_grouped_cdna_annotated.bedgraph

149.00 MB

Input_Day1_Group_4Reps_grouped_cdna_annotated.bed.gz

38.90 MB

iCount summary

Input_Day1_Group_4Reps_grouped_cdna_summary_subtype.tsv

1.01 kB

Input_Day1_Group_4Reps_grouped_cdna_summary_gene.tsv

2.94 MB

Input_Day1_Group_4Reps_grouped_cdna_summary_type.tsv

442 B

Paraclu

Input_Day1_Group_4Reps_grouped_cdna_peaks.bed.gz

708.10 kB

Input_Day5_Group_4Reps

iCount RNA-maps

Input_Day5_Group_4Reps_grouped_cdna.tar.gz

3.55 MB

iCount group

Input_Day5_Group_4Reps_grouped_cdna.bed.gz

20.23 MB

Input_Day5_Group_4Reps_grouped_cdna.bedgraph

97.45 MB

Input_Day5_Group_4Reps_grouped_reads.bed.gz

20.61 MB

iCount annotate

Input_Day5_Group_4Reps_grouped_cdna_annotated.bedgraph

97.45 MB

Input_Day5_Group_4Reps_grouped_cdna_annotated.bed.gz

25.84 MB

iCount summary

Input_Day5_Group_4Reps_grouped_cdna_summary_subtype.tsv

1.00 kB

Input_Day5_Group_4Reps_grouped_cdna_summary_type.tsv

441 B

Input_Day5_Group_4Reps_grouped_cdna_summary_gene.tsv

2.70 MB

Paraclu

Input_Day5_Group_4Reps_grouped_cdna_peaks.bed.gz

481.91 kB

PEKA

6mer analysis of Input_Day5_Group_4Reps_grouped_cdna.tar.gz

4.15 MB

input_CD8 T cells_Naive_Donor9_polyARNA_(m6A)_20200123_JU

Cutadapt (single-end)

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

35.53 MB

fastqc

Directory

report.txt

708 B

K-mers

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

372.13 kB

iCount RNA-maps

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

1.55 MB

Paraclu

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

39.71 kB

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.24 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

4.08 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

18.85 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

10.12 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

4.18 MB

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam

86.91 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

4.12 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bw

39.05 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

4.28 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

1.42 MB

iCount reads proxy

fastqc

Directory

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

35.53 MB

stderr.txt

2.05 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

419.57 kB

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

35.53 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.06 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bam

46.13 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

Cutadapt (single-end)

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

36.18 MB

fastqc

Directory

report.txt

692 B

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju.fastq.gz

35.24 MB

stderr.txt

1.73 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_fastqc.zip

415.87 kB

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

86.91 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

4.28 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

1.42 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bw

39.05 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

4.12 MB

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.32 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

10.13 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

4.08 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

4.18 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

18.85 MB

Paraclu

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

39.77 kB

iCount summary

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1006 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.80 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

438 B

iCount RNA-maps

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

1.55 MB

PEKA

6mer analysis of input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

2.56 MB

iCount summary

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.80 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.01 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

470 B

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

47.55 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

64.66 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

47.93 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

262 B

input_CD8 T cells_Day5_Donor9_polyARNA_(m6A)_20200123_JU

Cutadapt (single-end)

fastqc

Directory

report.txt

708 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

152.83 MB

K-mers

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

485.86 kB

iCount xlsites

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

69.91 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

14.53 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.48 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

14.81 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

34.20 MB

iCount xlsites

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

260 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

74.80 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

109.10 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

74.20 kB

iCount reads proxy

fastqc

Directory

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

152.83 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

413.13 kB

stderr.txt

2.03 kB

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.66 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

152.83 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bam

198.92 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

692 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

156.88 MB

iCount RNA-maps

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

3.05 MB

Paraclu

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

343.96 kB

iCount summary

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

473 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

2.51 MB

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

17.34 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.01 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

349.91 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.56 MB

iCount xlsites

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

69.91 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.57 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

14.81 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

34.21 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

14.53 MB

iCount RNA-maps

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

3.05 MB

iCount summary

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

440 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

2.51 MB

Paraclu

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

344.26 kB

PEKA

6mer analysis of input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.76 MB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_fastqc.zip

411.23 kB

stderr.txt

1.71 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju.fastq.gz

153.03 MB

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam

349.90 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

17.34 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.01 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

3.56 MB

input_CD8 T cells_Day1_Donor9b_polyARNA_(m6A)_20200123_JU

iCount summary

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

478 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

2.46 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.44 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

33.27 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

13.91 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

14.18 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

66.81 MB

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

17.68 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped.bam

345.86 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

3.36 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.09 MB

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

74.14 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

262 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

73.36 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

104.00 kB

iCount reads proxy

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

151.56 MB

stderr.txt

2.05 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

421.84 kB

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

151.56 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bam

194.59 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.bw

105.53 kB

Cutadapt (single-end)

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_trimmed.fastq.gz

153.62 MB

report.txt

693 B

K-mers

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

477.92 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

2.94 MB

Paraclu

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

322.17 kB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju.fastq.gz

149.83 MB

stderr.txt

1.73 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-ju_fastqc.zip

410.06 kB

Cutadapt (single-end)

report.txt

709 B

fastqc

Directory

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

151.56 MB

STAR

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.36 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.09 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

17.68 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

345.86 MB

iCount xlsites

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

14.18 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

66.81 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

13.92 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.52 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

33.27 MB

iCount RNA-maps

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.94 MB

iCount summary

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

2.46 MB

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

439 B

Paraclu

input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

322.85 kB

PEKA

6mer analysis of input-cd8-t-cells-day1-donor9b-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.73 MB

input_CD8 T cells_Naive_Donor8_polyARNA_(m6A)_20200123_JU

iCount xlsites

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.04 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

8.73 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

3.92 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

18.32 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

4.03 MB

STAR

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

4.09 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bam

77.38 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

1.49 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

3.77 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.bw

34.70 kB

iCount xlsites

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

61.14 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

43.79 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

44.17 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

262 B

STAR

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

34.01 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.03 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bam

43.92 MB

Cutadapt (single-end)

fastqc

Directory

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34.55 MB

report.txt

692 B

K-mers

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

375.29 kB

FASTQ file (single-end)

fastqc

Directory

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1.73 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju.fastq.gz

33.68 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_fastqc.zip

418.10 kB

Cutadapt (single-end)

fastqc

Directory

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34.01 MB

report.txt

708 B

STAR

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

1.49 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

77.38 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bw

34.70 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

4.09 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

3.77 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.80 kB

iCount xlsites

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3.13 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

18.32 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

3.92 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

8.74 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

4.03 MB

Paraclu

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

41.50 kB

iCount RNA-maps

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

1.60 MB

iCount summary

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1.70 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1014 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

435 B

PEKA

6mer analysis of input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

2.54 MB

iCount summary

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

468 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.70 MB

iCount RNA-maps

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

1.60 MB

Paraclu

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

41.36 kB

iCount reads proxy

fastqc

Directory

stderr.txt

2.05 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped.fastq.gz

34.01 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

419.72 kB

input_CD8 T cells_Day1_Donor9_polyARNA_(m6A)_20200123_JU

Paraclu

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

367.74 kB

iCount RNA-maps

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.tar.gz

3.12 MB

iCount xlsites

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bed.gz

15.69 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_skipped.bam

3.35 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

35.12 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_reads_single.bed.gz

16.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single.bedgraph

75.64 MB

iCount xlsites

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_skipped.bam

3.93 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_reads_single.bed.gz

72.92 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_single.bed.gz

72.28 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_singleAndMulti.bed.gz

107.02 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_single.bedgraph

260 B

iCount reads proxy

fastqc

Directory

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172.13 MB

stderr.txt

2.03 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_fastqc.zip

415.38 kB

STAR

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bam

220.09 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.57 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

172.13 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

Cutadapt (single-end)

fastqc

Directory

report.txt

692 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

174.21 MB

K-mers

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.tar.gz

496.78 kB

Paraclu

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_peaks.bed.gz

367.20 kB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju.fastq.gz

169.91 MB

stderr.txt

1.71 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-ju_fastqc.zip

410.89 kB

Cutadapt (single-end)

fastqc

Directory

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.fastq.gz

172.13 MB

report.txt

708 B

STAR

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

16.99 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

3.56 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_trimmed.bam

383.88 MB

iCount xlsites

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

75.64 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.44 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

16.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

35.12 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

15.70 MB

iCount summary

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

2.49 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

442 B

iCount RNA-maps

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

3.12 MB

PEKA

6mer analysis of input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.84 MB

iCount summary

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_type.tsv

480 B

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_gene.tsv

2.48 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

STAR

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam.bai

3.00 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

16.99 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped.bam

383.89 MB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor9-polyarna-m6a-20200123-jufastqgz_unmapped_SJ.out.tab

3.56 MB

input_CD8 T cells_RTneg_only_polyA_20190110_JU

iCount RNA-maps

results.tar.gz

247.53 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

714 B

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.fastq.gz

589.38 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_fastqc.zip

608.62 kB

iCount xlsites

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_skipped.bam

2.93 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_singleAndMulti.bed.gz

52.11 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single.bed.gz

7.39 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single.bedgraph

24.01 kB

iCount RNA-maps

results.tar.gz

239.01 kB

Cutadapt (single-end)

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.fastq.gz

589.38 kB

fastqc

Directory

report.txt

714 B

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_fastqc.zip

608.62 kB

iCount reads proxy

fastqc

Directory

stderr.txt

1.68 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_fastqc.zip

603.25 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped.fastq.gz

553.08 kB

FASTQ file (single-end)

fastqc

Directory

input-cd8-t-cells-rtneg-only-polya-20190110-ju.fastq.gz

891.23 kB

stderr.txt

1.50 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_fastqc.zip

550.71 kB

iCount xlsites

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_singleAndMulti.bed.gz

5.62 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single.bed.gz

3.01 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single.bedgraph

240 B

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_skipped.bam

3.96 kB

iCount summary

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single_summary_type.tsv

252 B

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single_summary_subtype.tsv

374 B

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single_summary_gene.tsv

12.64 kB

STAR

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

503.03 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bam.bai

1.53 MB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bam

1.31 MB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_SJ.out.tab

2.17 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bw

18.04 kB

STAR

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

553.08 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bam.bai

13.04 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bam

972.15 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed.bw

103.53 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_SJ.out.tab

0 B

iCount summary

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single_summary_gene.tsv

14.24 kB

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single_summary_type.tsv

253 B

input-cd8-t-cells-rtneg-only-polya-20190110-ju_trimmed_single_summary_subtype.tsv

360 B

iCount RNA-maps

results.tar.gz

239.01 kB

iCount xlsites

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_skipped.bam

2.93 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single.bed.gz

6.54 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_singleAndMulti.bed.gz

33.43 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_single.bedgraph

21.19 kB

STAR

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped.bam.bai

1.52 MB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped.bam

1.02 MB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

493.21 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_SJ.out.tab

1.85 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped.bw

16.02 kB

input-cd8-t-cells-rtneg-only-polya-20190110-jufastqgz_unmapped_stats.txt

1.78 kB

m6A_CD8 T cells_Naive_Donor8_20200123_JU

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_skipped.bam

3.48 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single.bed.gz

6.20 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_reads_single.bed.gz

6.92 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

8.70 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single.bedgraph

30.19 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

676 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.fastq.gz

182.85 MB

K-mers

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.tar.gz

454.34 kB

iCount RNA-maps

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single.tar.gz

1.99 MB

Paraclu

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single_peaks.bed.gz

144.51 kB

FASTQ file (single-end)

m6a-cd8-t-cells-naive-donor8-20200123-ju.fastq.gz

178.43 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_fastqc.zip

411.85 kB

stderr.txt

1.44 kB

fastqc

Directory

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed.fastq.gz

181.29 MB

report.txt

694 B

STAR

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

18.73 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed.bw

29.19 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed.bam

192.86 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.08 MB

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

6.92 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

30.19 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.57 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

6.22 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

8.73 MB

Paraclu

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

148.65 kB

iCount summary

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.53 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

440 B

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1023 B

iCount RNA-maps

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

1.99 MB

PEKA

6mer analysis of m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.74 MB

iCount peaks

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

1.48 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_scores.tsv.gz

5.20 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bedgraph

6.37 MB

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_skipped.bam

3.93 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_singleAndMulti.bed.gz

52.21 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_reads_single.bed.gz

39.17 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_single.bed.gz

37.23 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_single.bedgraph

228 B

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.fastq.gz

181.29 MB

stderr.txt

1.75 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_fastqc.zip

411.98 kB

STAR

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

181.29 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bam

211.71 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bw

105.56 kB

STAR

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

18.73 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.bam.bai

3.08 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.bam

192.85 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped.bw

29.19 kB

iCount summary

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single_summary_type.tsv

474 B

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-naive-donor8-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.53 MB

m6A_CD8 T cells_Day5_Donor8_20200123_JU

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.34 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.99 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_skipped.bam

3.93 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_reads_single.bed.gz

42.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_single.bed.gz

40.80 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_singleAndMulti.bed.gz

53.73 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_single.bedgraph

226 B

STAR

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

249.73 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam

290.42 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bw

105.49 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

Cutadapt (single-end)

fastqc

Directory

report.txt

675 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.fastq.gz

253.27 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single.tar.gz

2.33 MB

iCount reads proxy

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped.fastq.gz

249.73 MB

fastqc

Directory

stderr.txt

1.73 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_fastqc.zip

410.58 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-day5-donor8-20200123-ju.fastq.gz

246.53 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_fastqc.zip

411.55 kB

stderr.txt

1.42 kB

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.fastq.gz

249.73 MB

report.txt

693 B

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.fastq.gz

253.27 MB

report.txt

675 B

STAR

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bw

31.54 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bam

260.75 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.94 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

22.74 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.06 MB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam

294.01 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed.bam.bai

3.09 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

23.30 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_trimmed_SJ.out.tab

2.95 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

40.01 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

8.16 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.73 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

11.31 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_skipped.bam

3.86 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.bedgraph

40.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.bed.gz

8.16 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

11.61 MB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.59 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

443 B

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

237.00 kB

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single.tar.gz

2.34 MB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_type.tsv

438 B

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_summary_gene.tsv

1.59 MB

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

237.04 kB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome.tar.gz

3.99 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome.tar.gz

3.99 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

693 B

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.fastq.gz

249.73 MB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bw

31.54 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bam

260.75 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed.bam.bai

3.06 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_SJ.out.tab

2.94 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz

22.74 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bed.gz

8.16 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_skipped.bam

3.73 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.bedgraph

40.01 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_singleAndMulti.bed.gz

11.31 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single.tar.gz

2.34 MB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_gene.tsv

1.59 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_type.tsv

443 B

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

237.00 kB

iCount peaks

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bed.gz

2.43 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_scores.tsv.gz

6.81 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_mapped_to_genome_single_peaks.bedgraph

10.78 MB

iCount peaks

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

2.44 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_scores.tsv.gz

6.82 MB

m6a-cd8-t-cells-day5-donor8-20200123-ju_mapped_to_genome_single_peaks.bedgraph

10.80 MB

iCount summary

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single_summary_type.tsv

480 B

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single_summary_gene.tsv

1.59 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

Paraclu

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single_peaks.bed.gz

231.29 kB

STAR

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

22.74 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped.bam.bai

3.06 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped.bam

260.75 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_SJ.out.tab

2.94 MB

iCount xlsites

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_skipped.bam

3.64 kB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz

11.29 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single.bedgraph

40.01 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_reads_single.bed.gz

9.03 MB

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped_single.bed.gz

8.13 MB

K-mers

m6a-cd8-t-cells-day5-donor8-20200123-jufastqgz_unmapped.tar.gz

479.53 kB

m6A_CD8 T cells_Day1-activated_Donor4_polyA_20190312_JU

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.72 MB

STAR

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam

107.20 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.49 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

74.39 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bw

104.70 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_skipped.bam

3.17 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

4.71 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

5.03 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

22.90 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

7.63 MB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz

27.51 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

34.66 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph

258 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz

28.31 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

1.02 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

466 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.51 MB

Cutadapt (single-end)

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

74.46 MB

fastqc

Directory

report.txt

710 B

STAR

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

10.13 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

3.38 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

1.80 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

106.97 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

28.94 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

22.90 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

5.03 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

7.63 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

4.71 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

3.22 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.50 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

431 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

1004 B

Paraclu

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

117.30 kB

PEKA

6mer analysis of m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

3.21 MB

Paraclu

peaks.bed.gz

116.96 kB

iCount peaks

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

1.10 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

4.04 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

4.67 MB

K-mers

positional_distribution_intron.tsv

256.55 kB

other_exon region.png

177.96 kB

kmer_frequency_intron.tsv

5.70 kB

ncRNA region.png

301.60 kB

positional_distribution_ncRNA.tsv

368.10 kB

intron region.png

264.88 kB

kmer_frequency_ncRNA.tsv

5.88 kB

kmer_frequency_other_exon.tsv

5.83 kB

kmer_frequency_utr3.tsv

5.89 kB

kmer_frequency_genome.tsv

5.81 kB

positional_distribution_genome.tsv

555.04 kB

positional_distribution_utr3.tsv

565.32 kB

positional_distribution_other_exon.tsv

566.66 kB

utr3 region.png

241.21 kB

genome region.png

265.02 kB

Cutadapt (single-end)

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

73.95 MB

report.txt

722 B

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip

426.27 kB

STAR

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam.bai

3.39 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

10.12 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam

127.57 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bw

28.94 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

1.80 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped.fastq.gz

74.39 MB

stderr.txt

2.08 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

420.23 kB

iCount RNA-maps

results.tar.gz

1.72 MB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju.fastq.gz

73.55 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_fastqc.zip

424.87 kB

stderr.txt

1.76 kB

m6A_CD8 T cells_Day1-activated_Donor7_polyA_20190312_JU

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.09 MB

iCount summary

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.24 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

466 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

976 B

Cutadapt (single-end)

fastqc

Directory

report.txt

722 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_fastqc.zip

435.61 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.fastq.gz

77.57 MB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju.fastq.gz

77.16 MB

stderr.txt

1.67 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_fastqc.zip

439.14 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bed.gz

16.15 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

20.46 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bedgraph

258 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_reads_single.bed.gz

17.60 kB

iCount reads proxy

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped.fastq.gz

77.89 MB

fastqc

Directory

stderr.txt

2.08 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

428.94 kB

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

10.65 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped.bam.bai

2.95 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped.bam

101.12 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

900.00 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped.bw

21.73 kB

K-mers

kmer_frequency_intron.tsv

4.98 kB

positional_distribution_ncRNA.tsv

187.83 kB

positional_distribution_intron.tsv

169.26 kB

ncRNA region.png

186.10 kB

other_exon region.png

220.15 kB

positional_distribution_utr3.tsv

517.05 kB

kmer_frequency_ncRNA.tsv

4.95 kB

intron region.png

209.02 kB

positional_distribution_other_exon.tsv

555.55 kB

genome region.png

281.81 kB

kmer_frequency_utr3.tsv

5.78 kB

kmer_frequency_genome.tsv

5.88 kB

utr3 region.png

254.28 kB

kmer_frequency_other_exon.tsv

5.81 kB

positional_distribution_genome.tsv

565.31 kB

Cutadapt (single-end)

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

77.97 MB

fastqc

Directory

report.txt

710 B

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

2.95 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

83.24 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

900.00 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

21.73 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

10.66 MB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

2.98 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

8.35 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

1.79 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

3.10 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

2.08 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

35.37 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

432 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

942 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.24 MB

PEKA

6mer analysis of m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

2.76 MB

iCount peaks

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

358.88 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

1.68 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

1.24 MB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

1.79 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

3.10 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_skipped.bam

2.93 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

2.08 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

8.35 MB

iCount RNA-maps

results.tar.gz

1.09 MB

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam.bai

17.96 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

77.89 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam

111.54 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bw

104.36 kB

Paraclu

peaks.bed.gz

35.25 kB

m6a-cd8-t-cells-naive-group-4reps

Paraclu

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_peaks.bed.gz

380.96 kB

iCount RNA-maps

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna.tar.gz

2.82 MB

iCount group

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna.bed.gz

13.59 MB

m6a-cd8-t-cells-naive-group-4reps_grouped_reads.bed.gz

15.26 MB

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna.bedgraph

65.60 MB

iCount annotate

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_annotated.bed.gz

17.66 MB

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_annotated.bedgraph

65.60 MB

iCount summary

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_summary_type.tsv

443 B

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_summary_subtype.tsv

1.01 kB

m6a-cd8-t-cells-naive-group-4reps_grouped_cdna_summary_gene.tsv

2.96 MB

PEKA

5mer analysis of m6a-cd8-t-cells-naive-group-4reps_grouped_cdna.tar.gz

1.17 MB

m6A_CD8 T cells_Day5-activated_Donor5_polyA_20190312_JU

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_skipped.bam

4.18 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

3.14 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

3.65 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

5.33 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

14.99 MB

iCount reads proxy

fastqc

Directory

stderr.txt

2.08 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped.fastq.gz

136.83 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

427.31 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

711 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

136.97 MB

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

3.25 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

147.69 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

27.06 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

16.50 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

1.37 MB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

14.99 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

3.65 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

4.23 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

3.15 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

5.33 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

467 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.42 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

983 B

iCount summary

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.41 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

953 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

435 B

Paraclu

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

70.91 kB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.42 MB

Paraclu

peaks.bed.gz

70.55 kB

PEKA

6mer analysis of m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

3.14 MB

iCount RNA-maps

results.tar.gz

1.42 MB

iCount peaks

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

701.23 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

2.79 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

2.69 MB

K-mers

other_exon region.png

197.84 kB

intron region.png

288.06 kB

kmer_frequency_intron.tsv

5.45 kB

kmer_frequency_genome.tsv

5.84 kB

positional_distribution_ncRNA.tsv

313.30 kB

positional_distribution_intron.tsv

209.29 kB

kmer_frequency_utr3.tsv

5.89 kB

kmer_frequency_ncRNA.tsv

5.73 kB

positional_distribution_utr3.tsv

545.28 kB

positional_distribution_genome.tsv

570.43 kB

kmer_frequency_other_exon.tsv

5.90 kB

ncRNA region.png

289.88 kB

genome region.png

267.50 kB

positional_distribution_other_exon.tsv

569.82 kB

utr3 region.png

253.70 kB

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

16.48 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped.bam.bai

3.25 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped.bw

27.06 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped.bam

180.09 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

1.37 MB

Cutadapt (single-end)

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.fastq.gz

136.70 MB

report.txt

722 B

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_fastqc.zip

425.41 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_single.bed.gz

25.57 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_single.bedgraph

258 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_reads_single.bed.gz

27.64 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

32.62 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju.fastq.gz

135.58 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_fastqc.zip

430.29 kB

stderr.txt

1.67 kB

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam

197.17 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

136.83 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam.bai

20.28 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bw

104.80 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_stats.txt

1.78 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)

demux_nomatch.fastq.gz

14.33 GB

fastqc

Directory

demux_nomatch_fastqc.zip

589.80 kB

m6A_CD8 T cells_-XL_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-xl-polya-20190110-ju.fastq.gz

181.18 MB

fastqc

Directory

m6a-cd8-t-cells-xl-polya-20190110-ju_fastqc.zip

477.53 kB

iCLIP reads proxy

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.fastq.gz

171.17 MB

fastqc

Directory

PEKA

4mer analysis of m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.tar.gz

548.02 kB

Cutadapt (single-end)

report.txt

674 B

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed.fastq.gz

173.34 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

171.17 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed.bam

210.91 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-xl-polya-20190110-ju_trimmed.bw

106.01 kB

iCount xlsites

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

51.56 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

107.53 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

55.76 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

222 B

STAR

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

34.07 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.bam.bai

3.69 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.bam

195.98 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.33 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.bw

29.60 kB

iCount xlsites

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_skipped.bam

4.62 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single.bed.gz

2.91 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

5.59 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

3.43 MB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single.bedgraph

13.77 MB

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.39 MB

Paraclu

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

61.03 kB

iCount summary

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

659 B

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.14 MB

PEKA

5mer analysis of m6a-cd8-t-cells-xl-polya-20190110-ju_mapped_to_genome.tar.gz

1.15 MB

m6a-cd8-t-cells-day1-group-4reps

iCount group

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna.bed.gz

29.19 MB

m6a-cd8-t-cells-day1-group-4reps_grouped_reads.bed.gz

31.37 MB

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna.bedgraph

142.44 MB

iCount annotate

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_annotated.bed.gz

37.00 MB

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_annotated.bedgraph

142.44 MB

iCount summary

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_summary_type.tsv

448 B

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_summary_subtype.tsv

1.02 kB

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_summary_gene.tsv

3.27 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna.tar.gz

4.23 MB

Paraclu

m6a-cd8-t-cells-day1-group-4reps_grouped_cdna_peaks.bed.gz

996.52 kB

PEKA

5mer analysis of m6a-cd8-t-cells-day1-group-4reps_grouped_cdna.tar.gz

1.31 MB

m6a-cd8-t-cells-day5-group-4reps

Paraclu

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_peaks.bed.gz

666.28 kB

PEKA

5mer analysis of m6a-cd8-t-cells-day5-group-4reps_grouped_cdna.tar.gz

1.22 MB

iCount group

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna.bed.gz

19.50 MB

m6a-cd8-t-cells-day5-group-4reps_grouped_reads.bed.gz

21.54 MB

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna.bedgraph

95.28 MB

iCount annotate

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_annotated.bed.gz

25.12 MB

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_annotated.bedgraph

95.28 MB

iCount summary

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_summary_type.tsv

445 B

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_summary_subtype.tsv

1.01 kB

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna_summary_gene.tsv

3.12 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-group-4reps_grouped_cdna.tar.gz

3.48 MB

PM18271_Lane36

FASTQ file (single-end)

HAL249A1-A35_S37_L005_R1_001.fastq.gz

17.64 GB

fastqc

Directory

stderr.txt

1.21 kB

HAL249A1-A35_S37_L005_R1_001_fastqc.zip

594.87 kB

input_CD8 T cells_Non-activated_Donor2_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju.fastq.gz

73.42 kB

fastqc

Directory

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_fastqc.zip

577.07 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

74.71 kB

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

73.17 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bam.bai

5.80 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bam

101.77 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bw

102.60 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

887 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

1.46 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

911 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.fastq.gz

73.17 kB

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

10.58 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

1.57 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

279.57 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.78 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

3.68 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

15.61 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

10.69 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

54.22 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

10.85 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

34.86 kB

iCount RNA-maps

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

270.24 kB

Paraclu

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116 B

iCount summary

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

608 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

590 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

101.15 kB

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

input_CD8 T cells_Non-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju.fastq.gz

186.16 kB

fastqc

Directory

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_fastqc.zip

457.10 kB

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

189.96 kB

fastqc

Directory

iCount RNA-maps

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

343.50 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

189.59 kB

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

189.96 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam.bai

6.64 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam

249.14 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bw

102.75 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

1.01 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

1.67 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

1.03 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

260 B

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

28.34 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

1.75 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

696.40 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.78 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

7.92 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

16.03 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

27.36 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

126.35 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

27.72 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

92.48 kB

iCount summary

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

610 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

658 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

238.34 kB

Paraclu

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

161 B

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.39 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

41.61 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.24 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

263.55 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju.fastq.gz

220.47 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_fastqc.zip

477.54 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

662 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.29 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.54 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

573.05 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

209.39 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

208.34 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam

261.38 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bw

106.21 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

64.40 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

141.12 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

69.57 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

208.34 MB

fastqc

Directory

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

4.36 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

3.90 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

8.80 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

4.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

18.52 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

84.55 kB

input_CD8 T cells_Day5-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju.fastq.gz

1.50 MB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_fastqc.zip

419.11 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

489.96 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

225.56 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

1.53 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

1.53 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam.bai

19.09 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam

1.98 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bw

103.99 kB

iCLIP reads proxy

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

1.53 MB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

6.48 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

10.21 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

6.56 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

STAR

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

215.86 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

3.11 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

5.51 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.79 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

93.06 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

18.77 kB

iCount xlsites

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.25 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

205.89 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

932.37 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

208.92 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

777.86 kB

iCount summary

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

632 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

873 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

1.05 MB

Paraclu

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

795 B

m6A_CD8 T cells_Non-activated_Donors5&6_polyA_20190312_JU

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_SJ.out.tab

973.72 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.bw

26.81 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

21.94 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.bam.bai

3.59 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.bam

144.87 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju.fastq.gz

114.31 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_fastqc.zip

460.42 kB

iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.fastq.gz

108.18 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.14 MB

Paraclu

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

39.32 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.fastq.gz

109.16 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

108.18 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam

136.44 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bw

105.94 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

29.74 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

55.26 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

31.59 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCount xlsites

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_skipped.bam

3.93 kB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single.bed.gz

2.21 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

4.35 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

2.56 MB

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single.bedgraph

10.27 MB

iCount summary

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

665 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

976 B

m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.01 MB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_mapped_to_genome.tar.gz

534.67 kB

input_CD8 T cells_Day1-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju.fastq.gz

423.15 kB

fastqc

Directory

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_fastqc.zip

428.76 kB

PEKA

4mer analysis of input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

431.42 kB

fastqc

Directory

STAR

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

433.99 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam.bai

9.73 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam

559.32 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bw

103.06 kB

iCount xlsites

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

1.61 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

2.52 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

1.64 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

433.99 kB

fastqc

Directory

STAR

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

69.25 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

2.07 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

1.54 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.78 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

22.05 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

16.50 kB

iCount xlsites

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

59.92 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

275.91 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

60.79 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

210.38 kB

iCount RNA-maps

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

373.83 kB

iCount summary

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

626 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

735 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

459.59 kB

Paraclu

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

164 B

input_CD8 T cells_Day5-activated_Donor2_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju.fastq.gz

495.33 kB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_fastqc.zip

434.27 kB

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

504.67 kB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

504.85 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam.bai

14.66 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam

657.19 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bw

103.42 kB

iCount xlsites

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

2.45 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

4.03 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

2.48 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.fastq.gz

504.85 kB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

74.03 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

2.16 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

1.79 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.78 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

32.20 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

16.69 kB

iCount xlsites

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

71.20 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

322.84 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

72.19 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

254.11 kB

iCount summary

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

623 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

726 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

538.40 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

422.66 kB

Paraclu

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

161 B

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

178 B

m6A_CD8 T cells_-XL_polyA_20190312_JU

iCount xlsites

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

17.13 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single.bedgraph

77.11 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_skipped.bam

4.15 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single.bed.gz

15.68 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

23.22 MB

iCount summary

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

678 B

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.79 MB

FASTQ file (CLIP)

m6a-cd8-t-cells-xl-polya-20190312-ju.fastq.gz

594.73 MB

fastqc

Directory

m6a-cd8-t-cells-xl-polya-20190312-ju_fastqc.zip

427.84 kB

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single.tar.gz

3.10 MB

PEKA

4mer analysis of m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.tar.gz

710.82 kB

Cutadapt (single-end)

report.txt

672 B

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.fastq.gz

590.32 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

586.92 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam

711.28 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bw

106.44 kB

iCount xlsites

m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

66.49 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

124.58 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

69.23 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

222 B

iCLIP reads proxy

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.fastq.gz

586.92 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

85.94 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.bam.bai

3.75 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.bam

640.61 MB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_stats.txt

1.82 kB

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_SJ.out.tab

3.87 MB

Paraclu

m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

595.39 kB

PEKA

5mer analysis of m6a-cd8-t-cells-xl-polya-20190312-ju_mapped_to_genome.tar.gz

1.20 MB

m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju.fastq.gz

260.35 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_fastqc.zip

484.91 kB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.59 MB

Cutadapt (single-end)

report.txt

692 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

243.93 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

242.99 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bam

307.42 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bw

106.29 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

70.12 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

157.88 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

75.98 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

256 B

iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

242.99 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

50.83 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.26 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

320.32 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.45 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

5.58 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

4.81 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.59 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

22.48 MB

iCount summary

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

669 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

Paraclu

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

83.73 kB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

600.61 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)

demux_nomatch.fastq.gz

13.22 GB

fastqc

Directory

demux_nomatch_fastqc.zip

598.94 kB

m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju.fastq.gz

220.47 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_fastqc.zip

477.54 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

209.39 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

208.34 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam

261.39 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bw

106.21 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

64.39 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

141.12 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

69.56 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

208.34 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

41.61 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.24 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

263.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.39 MB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

4.36 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

3.90 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

8.80 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

4.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

18.52 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

84.55 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

662 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.29 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.54 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

580.79 kB

m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju.fastq.gz

296.74 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_fastqc.zip

475.54 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

283.60 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

281.32 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam

352.91 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bw

106.25 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

72.41 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

159.32 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

78.75 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

281.32 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

54.59 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.16 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

353.15 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.81 MB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

3.71 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

5.09 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.94 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

24.30 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

661 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.48 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.79 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116.61 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

593.50 kB

input_CD8 T cells_Non-activated_Donor2_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju.fastq.gz

597 B

fastqc

Directory

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_fastqc.zip

600.99 kB

Paraclu

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116 B

Cutadapt (single-end)

report.txt

695 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

556 B

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

640 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bam.bai

2.49 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bam

4.91 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.76 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bw

101.91 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

108 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

207 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

114 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.fastq.gz

640 B

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

234 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

750.78 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

4.38 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.77 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

0 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

15.43 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

183 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

426 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

189 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

394 B

iCount RNA-maps

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

28.59 kB

iCount summary

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

340 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

165 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

528 B

input_CD8 T cells_Non-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju.fastq.gz

976.29 kB

fastqc

Directory

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_fastqc.zip

508.31 kB

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

993.87 kB

fastqc

Directory

iCount RNA-maps

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

449.26 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

994.77 kB

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

993.87 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam.bai

16.06 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam

1.26 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bw

103.76 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

4.03 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

7.36 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

4.10 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

260 B

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

150.08 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

2.65 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

3.46 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.79 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

45.36 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

17.79 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

128.67 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

596.45 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

131.02 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

473.13 kB

iCount summary

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

627 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

668 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

790.53 kB

Paraclu

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

236 B

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

input_CD8 T cells_Day5-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju.fastq.gz

6.31 kB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_fastqc.zip

685.24 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

162.75 kB

Cutadapt (single-end)

report.txt

695 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

6.32 kB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

6.36 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam.bai

2.21 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam

12.06 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bw

101.94 kB

iCount xlsites

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

225 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

233 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

231 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

6.36 kB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

1.07 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

1.37 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

20.86 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.77 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

436 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

15.43 kB

iCount xlsites

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3.09 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

1015 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

4.44 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

1.02 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

2.99 kB

iCount summary

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

571 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

492 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

9.59 kB

Paraclu

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

117 B

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

input_CD8 T cells_Day1-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju.fastq.gz

841.88 kB

fastqc

Directory

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_fastqc.zip

516.92 kB

iCLIP reads proxy

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

857.84 kB

fastqc

Directory

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

858.01 kB

fastqc

Directory

STAR

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

857.84 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam.bai

16.20 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam

1.09 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.77 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bw

103.63 kB

iCount xlsites

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

3.82 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

6.57 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

3.88 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

STAR

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

129.13 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

2.58 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

3.14 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.79 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

45.67 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

17.55 kB

iCount xlsites

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

109.82 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

552.95 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

111.75 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

399.94 kB

iCount RNA-maps

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

466.83 kB

iCount summary

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

627 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

796 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

711.88 kB

Paraclu

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

180 B

PEKA

4mer analysis of input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

178 B

input_CD8 T cells_Day5-activated_Donor2_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju.fastq.gz

3.11 kB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_fastqc.zip

611.68 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

126.45 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

177 B

Cutadapt (single-end)

report.txt

694 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

3.08 kB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

3.23 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam.bai

2.07 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam

8.00 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.76 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_SJ.out.tab

0 B

iCLIP reads proxy

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.fastq.gz

3.23 kB

fastqc

Directory

iCount xlsites

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

109 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

117 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

115 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

STAR

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

419 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

1.35 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

12.02 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.77 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

209 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

15.43 kB

iCount xlsites

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

598 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

2.55 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

616 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

1.63 kB

iCount summary

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

584 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

506 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

5.36 kB

Paraclu

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

117 B

m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju.fastq.gz

260.35 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_fastqc.zip

484.91 kB

iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

242.99 MB

fastqc

Directory

Paraclu

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

83.73 kB

Cutadapt (single-end)

report.txt

692 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

243.93 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

242.99 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bam

307.41 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bw

106.29 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

70.08 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

157.81 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

75.97 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

256 B

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

50.83 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.26 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

320.30 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.45 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

5.57 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

4.81 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.59 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

22.48 MB

iCount summary

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

668 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.59 MB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

599.85 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)

demux_nomatch.fastq.gz

12.95 GB

fastqc

Directory

demux_nomatch_fastqc.zip

602.99 kB

m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju.fastq.gz

296.74 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_fastqc.zip

475.54 kB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.79 MB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

283.60 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

281.32 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam

352.91 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bw

106.25 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

72.43 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

159.32 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

78.76 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

281.32 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

54.59 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.16 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

353.15 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.81 MB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

3.70 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

5.09 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.94 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

24.30 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

664 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.48 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116.61 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

589.47 kB

input_CD8 T cells_Non-activated_Donor2_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju.fastq.gz

11.73 MB

fastqc

Directory

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_fastqc.zip

421.89 kB

iCount RNA-maps

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

844.68 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

12.03 MB

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

11.95 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bam

15.83 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_trimmed.bw

105.11 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

29.25 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

52.28 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

29.43 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.fastq.gz

11.95 MB

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

2.07 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

4.69 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

44.03 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

498.98 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.bw

35.05 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

1.41 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

6.95 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

1.43 MB

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

5.84 MB

Paraclu

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

4.95 kB

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

357.44 kB

iCount summary

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

650 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

957 B

input-cd8-t-cells-non-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.31 MB

input_CD8 T cells_Non-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju.fastq.gz

11.73 MB

fastqc

Directory

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_fastqc.zip

433.25 kB

Paraclu

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

4.82 kB

PEKA

4mer analysis of input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

356.41 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

12.02 MB

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

11.89 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bam

15.92 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_trimmed.bw

105.23 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

31.37 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

56.25 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

31.57 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

11.89 MB

fastqc

Directory

STAR

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

2.21 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

4.62 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

42.97 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

499.56 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

34.92 kB

iCount xlsites

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

1.38 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

6.68 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

1.41 MB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

5.71 MB

iCount summary

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

652 B

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.00 kB

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.32 MB

iCount RNA-maps

input-cd8-t-cells-non-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

834.78 kB

m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju.fastq.gz

260.35 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_fastqc.zip

484.91 kB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.59 MB

Paraclu

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

83.73 kB

Cutadapt (single-end)

report.txt

692 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

243.93 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

242.99 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bam

307.42 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_trimmed.bw

106.29 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

70.08 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

157.84 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

75.98 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

256 B

iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

242.99 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

50.83 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.26 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

320.31 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.45 MB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

5.57 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

4.81 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.59 MB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

22.48 MB

iCount summary

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

669 B

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

599.74 kB

input_CD8 T cells_Day5-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju.fastq.gz

117.07 MB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_fastqc.zip

434.92 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

2.46 MB

Paraclu

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

175.39 kB

Cutadapt (single-end)

report.txt

694 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

120.01 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

120.02 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bam

157.29 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_trimmed.bw

105.93 kB

iCount xlsites

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

85.35 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

146.12 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

85.68 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

120.02 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

22.95 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

2.56 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

413.64 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

3.32 MB

iCount xlsites

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.53 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

11.88 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

56.03 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

12.06 MB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

53.86 MB

iCount summary

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

668 B

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

3.83 MB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

594.25 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)

demux_nomatch.fastq.gz

9.71 GB

fastqc

Directory

demux_nomatch_fastqc.zip

585.34 kB

m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju.fastq.gz

220.47 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_fastqc.zip

477.54 kB

iCount summary

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

662 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.29 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.54 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

578.81 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

209.39 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

208.34 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bam

261.38 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_trimmed.bw

106.21 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

64.40 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

141.13 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

69.56 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

208.34 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

41.61 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.24 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

263.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.39 MB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

4.36 kB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

3.90 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

8.80 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

4.56 MB

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

18.52 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

84.55 kB

m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju.fastq.gz

296.74 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_fastqc.zip

475.54 kB

Paraclu

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

116.61 kB

Cutadapt (single-end)

report.txt

693 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.fastq.gz

283.60 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

281.32 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bam

352.90 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_trimmed.bw

106.25 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

72.41 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

159.25 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

78.75 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.fastq.gz

281.32 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

54.59 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam.bai

4.16 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.bam

353.13 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_SJ.out.tab

1.81 MB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_skipped.bam

3.70 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bed.gz

5.09 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

11.21 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

5.94 MB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.bedgraph

24.30 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

663 B

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.48 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.79 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor3-polya-20190110-ju_mapped_to_genome.tar.gz

587.33 kB

input_CD8 T cells_Day5-activated_Donor2_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju.fastq.gz

67.61 MB

fastqc

Directory

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_fastqc.zip

442.32 kB

iCount RNA-maps

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.tar.gz

1.87 MB

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.fastq.gz

69.36 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

69.14 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bam

91.22 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_trimmed.bw

105.66 kB

iCount xlsites

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

68.07 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

114.72 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

68.45 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.fastq.gz

69.14 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

14.32 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam.bai

3.11 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.bam

245.06 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_SJ.out.tab

2.26 MB

iCount xlsites

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_skipped.bam

3.35 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bed.gz

6.95 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

34.31 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

7.06 MB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single.bedgraph

30.91 MB

iCount summary

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

663 B

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

3.45 MB

Paraclu

input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

77.95 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-activated-donor2-polya-20190110-ju_mapped_to_genome.tar.gz

546.79 kB

input_CD8 T cells_Day1-activated_Donor1_polyA_20190110_JU

FASTQ file (CLIP)

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju.fastq.gz

16.51 MB

fastqc

Directory

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_fastqc.zip

424.69 kB

iCount RNA-maps

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.tar.gz

1023.08 kB

Cutadapt (single-end)

report.txt

693 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.fastq.gz

16.92 MB

fastqc

Directory

STAR

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

16.87 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bam

22.27 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_trimmed.bw

105.23 kB

iCount xlsites

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bed.gz

37.41 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

63.49 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_reads_single.bed.gz

37.71 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.fastq.gz

16.87 MB

fastqc

Directory

STAR

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

2.97 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam.bai

4.44 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bam

62.32 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_SJ.out.tab

772.92 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.bw

42.07 kB

iCount xlsites

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bed.gz

1.94 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_singleAndMulti.bed.gz

9.69 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_reads_single.bed.gz

1.98 MB

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single.bedgraph

8.22 MB

iCount summary

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_type.tsv

656 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_subtype.tsv

963 B

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_summary_gene.tsv

2.55 MB

Paraclu

input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome_single_peaks.bed.gz

9.71 kB

PEKA

4mer analysis of input-cd8-t-cells-day1-activated-donor1-polya-20190110-ju_mapped_to_genome.tar.gz

387.41 kB

PM19060_Lane37

FASTQ file (single-end)

CAP325A1-A67_S71_L008_R1_001.fastq.gz

11.63 GB

fastqc

Directory

stderr.txt

1.21 kB

CAP325A1-A67_S71_L008_R1_001_fastqc.zip

504.62 kB

PM20022_Lane48

FASTQ file (single-end)

GAM684A2-A37_S31_L003_R1_001.fastq.gz

16.65 GB

fastqc

Directory

stderr.txt

1.21 kB

GAM684A2-A37_S31_L003_R1_001_fastqc.zip

505.43 kB

m6A_CD8 T cells_Non-activated_Donor4_polyA_20190312_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju.fastq.gz

49.51 MB

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_fastqc.zip

463.58 kB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.29 MB

Cutadapt (single-end)

report.txt

689 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

48.85 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

47.46 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam

61.25 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bw

106.02 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

26.32 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

47.16 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

26.90 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

256 B

iCLIP reads proxy

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.fastq.gz

47.46 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

10.12 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.bam.bai

3.25 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.bam

71.29 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_SJ.out.tab

1.26 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.bw

25.79 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_skipped.bam

3.48 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bed.gz

2.66 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

4.47 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

2.86 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bedgraph

12.70 MB

iCount summary

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

651 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.01 MB

Paraclu

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

54.89 kB

PEKA

4mer analysis of m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_mapped_to_genome.tar.gz

526.89 kB

input-day5-4Reps

PEKA

5mer analysis of input-day5-4Reps_grouped_cdna.tar.gz

1.24 MB

iCount annotate

input-day5-4Reps_grouped_cdna_annotated.bed.gz

43.17 MB

input-day5-4Reps_grouped_cdna_annotated.bedgraph

164.54 MB

iCount group

input-day5-4Reps_grouped_cdna.bed.gz

34.98 MB

input-day5-4Reps_grouped_reads.bed.gz

35.49 MB

input-day5-4Reps_grouped_cdna.bedgraph

164.54 MB

iCount summary

input-day5-4Reps_grouped_cdna_summary_type.tsv

448 B

input-day5-4Reps_grouped_cdna_summary_subtype.tsv

1.01 kB

input-day5-4Reps_grouped_cdna_summary_gene.tsv

4.45 MB

iCount RNA-maps

input-day5-4Reps_grouped_cdna.tar.gz

4.39 MB

Paraclu

input-day5-4Reps_grouped_cdna_peaks.bed.gz

717.26 kB

m6A_CD8 T cells_Day1-activated_Donor7_polyA_20190312_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju.fastq.gz

90.88 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_fastqc.zip

455.51 kB

Cutadapt (single-end)

report.txt

690 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.fastq.gz

88.45 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

87.66 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam

109.60 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bw

105.80 kB

iCLIP reads proxy

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.fastq.gz

87.66 MB

fastqc

Directory

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

25.37 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

45.66 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

27.06 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

258 B

STAR

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

19.28 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.bam.bai

3.26 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.bam

99.31 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_SJ.out.tab

913.60 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.bw

23.28 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_skipped.bam

3.09 kB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single.bed.gz

1.80 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

3.39 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

2.09 MB

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single.bedgraph

8.37 MB

iCount summary

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

650 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

969 B

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

1.89 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.09 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

35.42 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_mapped_to_genome.tar.gz

506.33 kB

m6A_CD8 T cells_Day5-activated_Donor4_polyA_20190312_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju.fastq.gz

144.22 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_fastqc.zip

448.34 kB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single.tar.gz

2.20 MB

Cutadapt (single-end)

report.txt

691 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

143.90 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

143.12 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam

178.04 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bw

106.10 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

50.50 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

92.92 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

51.48 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.fastq.gz

143.12 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

24.45 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.bam.bai

3.74 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.bam

208.89 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_SJ.out.tab

2.51 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.bw

37.03 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_skipped.bam

3.42 kB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bed.gz

7.68 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

12.73 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

8.15 MB

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bedgraph

37.74 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

667 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

980 B

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.47 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

240.71 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_mapped_to_genome.tar.gz

619.96 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)

demux_nomatch.fastq.gz

7.99 GB

fastqc

Directory

demux_nomatch_fastqc.zip

504.97 kB

m6A_CD8 T cells_Day5-activated_Donor5_polyA_20190312_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju.fastq.gz

147.93 MB

fastqc

Directory

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_fastqc.zip

450.55 kB

Cutadapt (single-end)

report.txt

691 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.fastq.gz

146.62 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

145.51 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam

180.53 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bw

105.93 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

36.29 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

64.07 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

38.87 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.fastq.gz

145.51 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

23.96 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.bam.bai

3.51 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.bam

163.66 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_SJ.out.tab

1.38 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.bw

28.48 kB

iCount xlsites

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_skipped.bam

4.33 kB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single.bed.gz

3.15 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

5.69 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

3.66 MB

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single.bedgraph

15.01 MB

iCount RNA-maps

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.42 MB

iCount summary

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

660 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

975 B

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.10 MB

Paraclu

m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

71.00 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_mapped_to_genome.tar.gz

563.37 kB

m6A_CD8 T cells_Day1-activated_Donor4_polyA_20190312_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju.fastq.gz

93.73 MB

fastqc

Directory

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_fastqc.zip

451.94 kB

Cutadapt (single-end)

report.txt

691 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

88.74 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

86.54 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam

113.15 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bw

106.25 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bed.gz

42.37 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

80.50 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_reads_single.bed.gz

43.21 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_premapped_to_ncRNAs_single.bedgraph

258 B

iCLIP reads proxy

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.fastq.gz

86.54 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

17.61 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.bam.bai

3.71 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.bam

140.07 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_SJ.out.tab

1.83 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.bw

31.56 kB

iCount xlsites

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_skipped.bam

3.34 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bed.gz

4.73 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_singleAndMulti.bed.gz

8.33 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_reads_single.bed.gz

5.05 MB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single.bedgraph

22.98 MB

iCount summary

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_type.tsv

661 B

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single_summary_gene.tsv

2.25 MB

iCount RNA-maps

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single.tar.gz

1.73 MB

Paraclu

m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome_single_peaks.bed.gz

119.44 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_mapped_to_genome.tar.gz

576.86 kB

m6A_CD8 T cells_IgG_total_RNA_20200123_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-igg-total-rna-20200123-ju.fastq.gz

10.34 MB

fastqc

Directory

m6a-cd8-t-cells-igg-total-rna-20200123-ju_fastqc.zip

515.20 kB

iCount RNA-maps

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single.tar.gz

487.47 kB

Cutadapt (single-end)

report.txt

677 B

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.fastq.gz

9.42 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

6.19 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bam.bai

20.07 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bam

10.88 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bw

105.40 kB

iCount xlsites

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_single.bed.gz

36.21 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

45.35 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

38.01 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_premapped_to_ncRNAs_single.bedgraph

230 B

iCLIP reads proxy

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.fastq.gz

6.19 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

2.57 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.bam.bai

2.10 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.bam

10.46 MB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_stats.txt

1.80 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_SJ.out.tab

166.25 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.bw

20.16 kB

iCount xlsites

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_skipped.bam

3.08 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single.bed.gz

174.87 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

451.73 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_reads_single.bed.gz

190.80 kB

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single.bedgraph

678.17 kB

Paraclu

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single_peaks.bed.gz

1.45 kB

iCount summary

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single_summary_type.tsv

638 B

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

943 B

m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome_single_summary_gene.tsv

996.75 kB

PEKA

4mer analysis of m6a-cd8-t-cells-igg-total-rna-20200123-ju_mapped_to_genome.tar.gz

217.26 kB

m6A_CD8 T cells_-XL_polyA_RNA_20200123_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-xl-polya-rna-20200123-ju.fastq.gz

272.00 MB

fastqc

Directory

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_fastqc.zip

414.97 kB

iCount summary

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single_summary_type.tsv

671 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.50 MB

Paraclu

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single_peaks.bed.gz

419.81 kB

Cutadapt (single-end)

report.txt

676 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.fastq.gz

279.29 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

275.93 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bam

318.21 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_trimmed.bw

105.62 kB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_single.bed.gz

48.48 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

69.49 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

49.71 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_premapped_to_ncRNAs_single.bedgraph

230 B

iCLIP reads proxy

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome.fastq.gz

275.93 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

28.38 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome.bam.bai

3.22 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome.bam

309.99 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_SJ.out.tab

3.78 MB

iCount xlsites

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_skipped.bam

3.94 kB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single.bed.gz

12.72 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

16.80 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_reads_single.bed.gz

13.44 MB

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single.bedgraph

63.02 MB

iCount RNA-maps

m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome_single.tar.gz

2.89 MB

PEKA

4mer analysis of m6a-cd8-t-cells-xl-polya-rna-20200123-ju_mapped_to_genome.tar.gz

675.94 kB

m6A_CD8 T cells_Naive_Donor8_20200123_JU

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_skipped.bam

3.67 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single.bed.gz

6.22 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

8.73 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_reads_single.bed.gz

6.92 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single.bedgraph

30.19 MB

FASTQ file (CLIP)

m6a-cd8-t-cells-naive-donor8-20200123-ju.fastq.gz

178.43 MB

fastqc

Directory

m6a-cd8-t-cells-naive-donor8-20200123-ju_fastqc.zip

411.86 kB

Cutadapt (single-end)

report.txt

676 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.fastq.gz

182.85 MB

fastqc

Directory

iCLIP reads proxy

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.fastq.gz

181.29 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single.tar.gz

1.99 MB

PEKA

4mer analysis of m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.tar.gz

607.07 kB

STAR

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

181.29 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bam

211.71 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_trimmed.bw

105.56 kB

iCount xlsites

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_single.bed.gz

37.29 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

52.20 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

39.19 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_premapped_to_ncRNAs_single.bedgraph

228 B

STAR

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

18.73 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.bam.bai

3.08 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.bam

192.83 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_SJ.out.tab

2.48 MB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome.bw

29.19 kB

iCount summary

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single_summary_type.tsv

666 B

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.25 MB

Paraclu

m6a-cd8-t-cells-naive-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

148.64 kB

m6A_CD8 T cells_Day1_Donor9_20200123_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-donor9-20200123-ju.fastq.gz

279.25 MB

fastqc

Directory

m6a-cd8-t-cells-day1-donor9-20200123-ju_fastqc.zip

413.38 kB

Cutadapt (single-end)

report.txt

675 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.fastq.gz

286.53 MB

fastqc

Directory

iCLIP reads proxy

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome.fastq.gz

284.52 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single.tar.gz

2.99 MB

STAR

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

284.52 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bam

335.31 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_trimmed.bw

105.74 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_single.bed.gz

57.97 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

98.72 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

59.22 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_premapped_to_ncRNAs_single.bedgraph

226 B

STAR

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

31.73 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome.bam.bai

3.67 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome.bam

357.33 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_SJ.out.tab

3.69 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_skipped.bam

4.75 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single.bed.gz

13.97 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

20.27 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_reads_single.bed.gz

14.66 MB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single.bedgraph

68.98 MB

iCount summary

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single_summary_type.tsv

675 B

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.66 MB

Paraclu

m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome_single_peaks.bed.gz

459.69 kB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-donor9-20200123-ju_mapped_to_genome.tar.gz

681.29 kB

m6A_CD8 T cells_Day1_Donor8_20200123_JU

FASTQ file (CLIP)

m6a-cd8-t-cells-day1-donor8-20200123-ju.fastq.gz

432.43 MB

fastqc

Directory

m6a-cd8-t-cells-day1-donor8-20200123-ju_fastqc.zip

408.55 kB

iCLIP reads proxy

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome.fastq.gz

440.50 MB

fastqc

Directory

iCount RNA-maps

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single.tar.gz

3.01 MB

PEKA

4mer analysis of m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome.tar.gz

700.95 kB

Cutadapt (single-end)

report.txt

675 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.fastq.gz

443.84 MB

fastqc

Directory

STAR

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

440.50 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bam

514.08 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_trimmed.bw

105.77 kB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.10 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_single.bed.gz

49.82 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

74.09 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

52.13 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_premapped_to_ncRNAs_single.bedgraph

226 B

STAR

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

44.85 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome.bam.bai

3.56 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome.bam

467.18 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_stats.txt

1.82 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_SJ.out.tab

3.78 MB

iCount xlsites

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_skipped.bam

5.06 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single.bed.gz

14.26 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

19.80 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_reads_single.bed.gz

15.63 MB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single.bedgraph

69.86 MB

iCount summary

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single_summary_type.tsv

672 B

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.66 MB

Paraclu

m6a-cd8-t-cells-day1-donor8-20200123-ju_mapped_to_genome_single_peaks.bed.gz

442.87 kB

input_CD8 T cells_Naive_Donor9_polyARNA_(m6A)_20200123_JU

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.43 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

4.08 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

10.13 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

4.18 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

18.85 MB

FASTQ file (CLIP)

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju.fastq.gz

35.24 MB

fastqc

Directory

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_fastqc.zip

415.87 kB

iCLIP reads proxy

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

35.53 MB

fastqc

Directory

iCount RNA-maps

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

1.55 MB

Paraclu

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

39.76 kB

PEKA

4mer analysis of input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

478.38 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

36.18 MB

fastqc

Directory

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

35.53 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bam

46.13 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.06 kB

iCount xlsites

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

47.57 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

64.68 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

47.95 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

262 B

STAR

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

4.28 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

4.12 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam

86.91 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

1.42 MB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bw

39.05 kB

iCount summary

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

666 B

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

input-cd8-t-cells-naive-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.61 MB

input_CD8 T cells_Day5_Donor9_polyARNA_(m6A)_20200123_JU

iCount xlsites

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.68 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

14.53 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

34.21 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

14.81 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

69.91 MB

FASTQ file (CLIP)

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju.fastq.gz

153.03 MB

fastqc

Directory

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_fastqc.zip

411.23 kB

iCLIP reads proxy

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

152.83 MB

fastqc

Directory

iCount summary

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

669 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

3.50 MB

PEKA

4mer analysis of input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

618.59 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.fastq.gz

156.88 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

152.83 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bam

198.92 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_trimmed.bw

105.66 kB

iCount xlsites

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

74.28 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

108.99 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

74.85 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

260 B

STAR

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

17.34 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.01 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome.bam

349.90 MB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

3.56 MB

Paraclu

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

344.25 kB

iCount RNA-maps

input-cd8-t-cells-day5-donor9-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

3.05 MB

input_CD8 T cells_Day1_Donor8_polyARNA_(m6A)_20200123_JU

FASTQ file (CLIP)

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju.fastq.gz

55.06 MB

fastqc

Directory

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_fastqc.zip

418.01 kB

PEKA

4mer analysis of input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

527.29 kB

Cutadapt (single-end)

report.txt

691 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

56.51 MB

fastqc

Directory

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

55.81 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bam

71.95 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.13 kB

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

51.26 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

70.68 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

51.72 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

55.81 MB

fastqc

Directory

STAR

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

5.35 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.83 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam

132.97 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

2.11 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bw

44.15 kB

iCount xlsites

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.42 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

6.43 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

15.14 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

6.59 MB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

30.37 MB

iCount summary

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

666 B

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.85 MB

iCount RNA-maps

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

2.06 MB

Paraclu

input-cd8-t-cells-day1-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

103.46 kB

input_CD8 T cells_Naive_Donor8_polyARNA_(m6A)_20200123_JU

FASTQ file (CLIP)

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju.fastq.gz

33.68 MB

fastqc

Directory

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_fastqc.zip

418.10 kB

iCount RNA-maps

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

1.60 MB

PEKA

4mer analysis of input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

476.68 kB

Cutadapt (single-end)

report.txt

692 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

34.55 MB

fastqc

Directory

STAR

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

34.01 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bam

43.92 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.03 kB

iCount xlsites

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

43.78 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

61.16 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

44.19 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

262 B

iCLIP reads proxy

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

34.01 MB

fastqc

Directory

STAR

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

3.77 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

4.09 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam

77.38 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.80 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

1.49 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bw

34.70 kB

iCount xlsites

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.24 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

3.92 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

8.74 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

4.03 MB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

18.32 MB

Paraclu

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

41.49 kB

iCount summary

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

662 B

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-naive-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.49 MB

input_CD8 T cells_Day5_Donor8_polyARNA_(m6A)_20200123_JU

FASTQ file (CLIP)

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju.fastq.gz

72.55 MB

fastqc

Directory

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_fastqc.zip

419.69 kB

Cutadapt (single-end)

report.txt

691 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.fastq.gz

74.44 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz

72.21 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bam.bai

20.56 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bam

94.35 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_stats.txt

1.78 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed_SJ.out.tab

0 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_trimmed.bw

105.35 kB

iCount xlsites

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_skipped.bam

4.11 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bed.gz

59.95 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_singleAndMulti.bed.gz

85.16 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_reads_single.bed.gz

60.52 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_premapped_to_ncRNAs_single.bedgraph

260 B

iCLIP reads proxy

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.fastq.gz

72.21 MB

fastqc

Directory

STAR

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_unmapped.out.mate1.fastq.gz

7.29 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam.bai

3.70 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bam

166.45 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_stats.txt

1.81 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_SJ.out.tab

2.42 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.bw

48.68 kB

iCount xlsites

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_skipped.bam

3.09 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bed.gz

7.33 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_singleAndMulti.bed.gz

17.37 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_reads_single.bed.gz

7.50 MB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.bedgraph

34.97 MB

iCount RNA-maps

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single.tar.gz

2.22 MB

iCount summary

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_type.tsv

662 B

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_summary_gene.tsv

2.97 MB

Paraclu

input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome_single_peaks.bed.gz

143.61 kB

PEKA

4mer analysis of input-cd8-t-cells-day5-donor8-polyarna-m6a-20200123-ju_mapped_to_genome.tar.gz

542.45 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)

demux_nomatch.fastq.gz

10.35 GB

fastqc

Directory

demux_nomatch_fastqc.zip

511.15 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)

demux_nomatch.fastq.gz

12.47 GB

fastqc

Directory

demux_nomatch_fastqc.zip

607.79 kB

input-naive-4reps

iCount RNA-maps

input-naive-4reps_grouped_cdna.tar.gz

2.34 MB

Paraclu

input-naive-4reps_grouped_cdna_peaks.bed.gz

130.91 kB

iCount group

input-naive-4reps_grouped_cdna.bed.gz

9.92 MB

input-naive-4reps_grouped_reads.bed.gz

10.13 MB

input-naive-4reps_grouped_cdna.bedgraph

46.05 MB

iCount summary

input-naive-4reps_grouped_cdna_summary_type.tsv

443 B

input-naive-4reps_grouped_cdna_summary_subtype.tsv

1022 B

input-naive-4reps_grouped_cdna_summary_gene.tsv

3.37 MB

iCount annotate

input-naive-4reps_grouped_cdna_annotated.bed.gz

12.86 MB

input-naive-4reps_grouped_cdna_annotated.bedgraph

46.05 MB

PEKA

5mer analysis of input-naive-4reps_grouped_cdna.tar.gz

973.52 kB

input-day1-4Reps

iCount group

input-day1-4Reps_grouped_cdna.bed.gz

32.34 MB

input-day1-4Reps_grouped_reads.bed.gz

32.86 MB

input-day1-4Reps_grouped_cdna.bedgraph

154.93 MB

iCount summary

input-day1-4Reps_grouped_cdna_summary_type.tsv

439 B

input-day1-4Reps_grouped_cdna_summary_subtype.tsv

1.01 kB

input-day1-4Reps_grouped_cdna_summary_gene.tsv

4.10 MB

Paraclu

input-day1-4Reps_grouped_cdna_peaks.bed.gz

723.59 kB

iCount RNA-maps

input-day1-4Reps_grouped_cdna.tar.gz

4.33 MB

iCount annotate

input-day1-4Reps_grouped_cdna_annotated.bed.gz

40.45 MB

input-day1-4Reps_grouped_cdna_annotated.bedgraph

154.93 MB

PEKA

5mer analysis of input-day1-4Reps_grouped_cdna.tar.gz

1.24 MB

m6A_CD8 T cells_negXL_polyA_20190110_JU

iCount xlsites

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_singleAndMulti.bed.gz

5.72 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_skipped.bam

4.47 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single.bed.gz

2.94 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single.bedgraph

13.88 MB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.36 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_fastqc.zip

488.94 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju.fastq.gz

176.73 MB

iCount RNA-maps

results.tar.gz

1.39 MB

STAR

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bam

259.25 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

32.38 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bam.bai

3.61 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_SJ.out.tab

1.33 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bw

32.87 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

708 B

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_fastqc.zip

449.69 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.fastq.gz

170.63 MB

iCount summary

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single_summary_gene.tsv

1.02 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single_summary_type.tsv

268 B

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single_summary_subtype.tsv

648 B

STAR

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped.bam.bai

3.56 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped.bam

231.13 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

31.75 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_SJ.out.tab

1.32 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped.bw

29.77 kB

iCount summary

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single_summary_subtype.tsv

646 B

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single_summary_gene.tsv

1.01 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single_summary_type.tsv

269 B

iCount RNA-maps

results.tar.gz

1.39 MB

iCount reads proxy

fastqc

Directory

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped.fastq.gz

168.57 MB

stderr.txt

1.73 kB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_fastqc.zip

449.97 kB

iCount xlsites

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single.bed.gz

44.94 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_singleAndMulti.bed.gz

84.48 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_skipped.bam

3.96 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_single.bedgraph

226 B

iCount xlsites

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_skipped.bam

4.48 kB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single.bedgraph

13.84 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_singleAndMulti.bed.gz

5.40 MB

m6a-cd8-t-cells-negxl-polya-20190110-jufastqgz_unmapped_single.bed.gz

2.93 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

708 B

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.fastq.gz

170.63 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_fastqc.zip

449.69 kB

STAR

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz

168.57 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bam

245.38 MB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bam.bai

20.56 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-negxl-polya-20190110-ju_trimmed.bw

105.68 kB

iCount RNA-maps

results.tar.gz

1.39 MB

m6A_CD8 T cells_Non-activated_Donor4_polyA_20190312_JU

Cutadapt (single-end)

fastqc

Directory

report.txt

709 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.fastq.gz

41.36 MB

iCount reads proxy

fastqc

Directory

stderr.txt

2.07 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped.fastq.gz

41.32 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_fastqc.zip

443.74 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz

16.04 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz

19.43 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz

16.54 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph

256 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_skipped.bam

3.96 kB

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz

5.65 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam

67.66 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bam.bai

2.84 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab

1.24 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped.bw

24.41 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_stats.txt

1.81 kB

K-mers

kmer_frequency_ncRNA.tsv

5.67 kB

other_exon region.png

201.21 kB

kmer_frequency_intron.tsv

4.95 kB

positional_distribution_ncRNA.tsv

292.37 kB

positional_distribution_utr3.tsv

535.29 kB

positional_distribution_intron.tsv

167.67 kB

kmer_frequency_utr3.tsv

5.83 kB

utr3 region.png

238.71 kB

ncRNA region.png

250.94 kB

positional_distribution_genome.tsv

569.69 kB

genome region.png

244.76 kB

intron region.png

167.62 kB

positional_distribution_other_exon.tsv

566.41 kB

kmer_frequency_genome.tsv

5.82 kB

kmer_frequency_other_exon.tsv

5.92 kB

iCount summary

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv

464 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv

1.01 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv

1.33 MB

iCount RNA-maps

results.tar.gz

1.29 MB

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_stats.txt

1.81 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam

56.96 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_SJ.out.tab

1.24 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bam.bai

2.84 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed_unmapped.out.mate1.fastq.gz

5.66 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_trimmed.bw

24.41 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bedgraph

12.67 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.bed.gz

2.65 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_skipped.bam

3.37 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_singleAndMulti.bed.gz

4.06 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_reads_single.bed.gz

2.85 MB

iCount RNA-maps

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single.tar.gz

1.29 MB

Paraclu

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

54.24 kB

iCount summary

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_type.tsv

431 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_gene.tsv

1.33 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_summary_subtype.tsv

1009 B

PEKA

6mer analysis of m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome.tar.gz

2.80 MB

iCount peaks

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bed.gz

495.03 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_scores.tsv.gz

2.37 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_mapped_to_genome_single_peaks.bedgraph

1.87 MB

Cutadapt (single-end)

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.fastq.gz

41.13 MB

report.txt

721 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip

448.07 kB

Paraclu

peaks.bed.gz

54.13 kB

STAR

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz

41.32 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam

58.30 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_stats.txt

1.78 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam.bai

17.68 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab

0 B

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bw

104.12 kB

FASTQ file (single-end)

fastqc

Directory

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju.fastq.gz

40.97 MB

stderr.txt

1.66 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_fastqc.zip

444.54 kB

iCount xlsites

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz

4.06 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bed.gz

2.65 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz

2.85 MB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_skipped.bam

3.31 kB

m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-5_unmapped_single.bedgraph

12.67 MB

m6A_human_CD8_Tcells

No Sample

input_CD8 T cells_Day1_Donor9_polyARNA_(m6A)_20200123_JU

m6A_CD8 T cells_Day5_Donor8_20200123_JU

input_CD8 T cells_Day1_Donor9b_polyARNA_(m6A)_20200123_JU

m6A_CD8 T cells_Day1_Donor8_20200123_JU

m6A_CD8 T cells_Non-activated_Donors5&6_polyA_20190312_JU

m6A_Day1_Group_5Reps

input_CD8 T cells_Day5_Donor8_polyARNA_(m6A)_20200123_JU

m6A_Day5_Group_4Reps

m6A_CD8 T cells_-XL_polyA_RNA_20200123_JU

input_CD8 T cells_Day1_Donor8_polyARNA_(m6A)_20200123_JU

m6A_CD8 T cells_Day1_Donor9_20200123_JU

m6A_CD8 T cells_Day5-activated_Donor4_polyA_20190312_JU

m6A_Naive_Group_4Reps

Input_Naive_Group_4Reps

Input_Day1_Group_4Reps

Input_Day5_Group_4Reps

input_CD8 T cells_Naive_Donor9_polyARNA_(m6A)_20200123_JU

input_CD8 T cells_Day5_Donor9_polyARNA_(m6A)_20200123_JU

input_CD8 T cells_Day1_Donor9b_polyARNA_(m6A)_20200123_JU

input_CD8 T cells_Naive_Donor8_polyARNA_(m6A)_20200123_JU

input_CD8 T cells_Day1_Donor9_polyARNA_(m6A)_20200123_JU

input_CD8 T cells_RTneg_only_polyA_20190110_JU

m6A_CD8 T cells_Naive_Donor8_20200123_JU

m6A_CD8 T cells_Day5_Donor8_20200123_JU

m6A_CD8 T cells_Day1-activated_Donor4_polyA_20190312_JU

m6A_CD8 T cells_Day1-activated_Donor7_polyA_20190312_JU

m6a-cd8-t-cells-naive-group-4reps

m6A_CD8 T cells_Day5-activated_Donor5_polyA_20190312_JU

demux_nomatch.fastq.gz

m6A_CD8 T cells_-XL_polyA_20190110_JU

m6a-cd8-t-cells-day1-group-4reps

m6a-cd8-t-cells-day5-group-4reps

PM18271_Lane36

input_CD8 T cells_Non-activated_Donor2_polyA_20190110_JU

input_CD8 T cells_Non-activated_Donor1_polyA_20190110_JU

m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU

input_CD8 T cells_Day5-activated_Donor1_polyA_20190110_JU

m6A_CD8 T cells_Non-activated_Donors5&6_polyA_20190312_JU

input_CD8 T cells_Day1-activated_Donor1_polyA_20190110_JU

input_CD8 T cells_Day5-activated_Donor2_polyA_20190110_JU

m6A_CD8 T cells_-XL_polyA_20190312_JU

m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU

demux_nomatch.fastq.gz

m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU

m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU

input_CD8 T cells_Non-activated_Donor2_polyA_20190110_JU

input_CD8 T cells_Non-activated_Donor1_polyA_20190110_JU

input_CD8 T cells_Day5-activated_Donor1_polyA_20190110_JU

input_CD8 T cells_Day1-activated_Donor1_polyA_20190110_JU

input_CD8 T cells_Day5-activated_Donor2_polyA_20190110_JU

m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU

demux_nomatch.fastq.gz

m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU

input_CD8 T cells_Non-activated_Donor2_polyA_20190110_JU

input_CD8 T cells_Non-activated_Donor1_polyA_20190110_JU

m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU

input_CD8 T cells_Day5-activated_Donor1_polyA_20190110_JU

demux_nomatch.fastq.gz

m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU

m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU

input_CD8 T cells_Day5-activated_Donor2_polyA_20190110_JU

input_CD8 T cells_Day1-activated_Donor1_polyA_20190110_JU

PM19060_Lane37

PM20022_Lane48

m6A_CD8 T cells_Non-activated_Donor4_polyA_20190312_JU

input-day5-4Reps

m6A_CD8 T cells_Day1-activated_Donor7_polyA_20190312_JU

m6A_CD8 T cells_Day5-activated_Donor4_polyA_20190312_JU

demux_nomatch.fastq.gz

m6A_CD8 T cells_Day5-activated_Donor5_polyA_20190312_JU

m6A_CD8 T cells_Day1-activated_Donor4_polyA_20190312_JU

m6A_CD8 T cells_IgG_total_RNA_20200123_JU

m6A_CD8 T cells_-XL_polyA_RNA_20200123_JU

m6A_CD8 T cells_Naive_Donor8_20200123_JU

m6A_CD8 T cells_Day1_Donor9_20200123_JU

m6A_CD8 T cells_Day1_Donor8_20200123_JU

input_CD8 T cells_Naive_Donor9_polyARNA_(m6A)_20200123_JU

input_CD8 T cells_Day5_Donor9_polyARNA_(m6A)_20200123_JU