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Folder iconCPEB1 mESC

Miha Modic
May 7, 2020

merge_iCLIP_CPEB.fq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
995 B
merge_iCLIP_CPEB_fastqc.zip
515.82 kB
merge_iCLIP_CPEB.fastq.gz
148.50 MB
iCount summary
merge_iCLIP_CPEB_mapped_to_genome_single_summary_type.tsv
416 B
merge_iCLIP_CPEB_mapped_to_genome_single_summary_subtype.tsv
757 B
merge_iCLIP_CPEB_mapped_to_genome_single_summary_gene.tsv
136.00 kB
iCount RNA-maps
merge_iCLIP_CPEB_mapped_to_genome_single.tar.gz
311.30 kB
Paraclu
merge_iCLIP_CPEB_mapped_to_genome_single_peaks.bed.gz
76 B
PEKA
4mer analysis of merge_iCLIP_CPEB_mapped_to_genome.tar.gz
158 B
Cutadapt (single-end)
fastqc
Directory
report.txt
653 B
merge_iCLIP_CPEB_trimmed.fastq.gz
152.45 MB
Cutadapt (single-end)
fastqc
Directory
merge_iCLIP_CPEB_trimmed_trimmed.fastq.gz
152.45 MB
report.txt
662 B
iCount RNA-maps
merge_iCLIP_CPEB_mapped_to_genome_single.tar.gz
264.11 kB
PEKA
4mer analysis of merge_iCLIP_CPEB_mapped_to_genome.tar.gz
158 B
iCLIP reads proxy
fastqc
Directory
merge_iCLIP_CPEB_trimmed_mapped_to_genome.fastq.gz
116.49 MB
Paraclu
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single_peaks.bed.gz
84 B
iCount RNA-maps
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single.tar.gz
264.68 kB
PEKA
4mer analysis of merge_iCLIP_CPEB_trimmed_mapped_to_genome.tar.gz
163 B
Cutadapt (single-end)
fastqc
Directory
merge_iCLIP_CPEB_trimmed.fastq.gz
152.45 MB
report.txt
653 B
STAR
merge_iCLIP_CPEB_trimmed_unmapped.out.mate1.fastq.gz
132.12 MB
merge_iCLIP_CPEB_trimmed.bam
153.62 MB
merge_iCLIP_CPEB_trimmed.bam.bai
1.42 MB
merge_iCLIP_CPEB_trimmed_SJ.out.tab
12.17 kB
merge_iCLIP_CPEB_trimmed.bw
4.56 kB
merge_iCLIP_CPEB_trimmed_stats.txt
1.80 kB
iCount xlsites
merge_iCLIP_CPEB_mapped_to_genome_skipped.bam
15.38 kB
merge_iCLIP_CPEB_mapped_to_genome_single.bed.gz
41.07 kB
merge_iCLIP_CPEB_mapped_to_genome_single.bedgraph
145.53 kB
merge_iCLIP_CPEB_mapped_to_genome_singleAndMulti.bed.gz
118.33 kB
merge_iCLIP_CPEB_mapped_to_genome_reads_single.bed.gz
47.39 kB
STAR
merge_iCLIP_CPEB_trimmed_unmapped.out.mate1.fastq.gz
116.49 MB
merge_iCLIP_CPEB_trimmed.bam.bai
1.90 MB
merge_iCLIP_CPEB_trimmed.bam
152.91 MB
merge_iCLIP_CPEB_trimmed_stats.txt
1.80 kB
merge_iCLIP_CPEB_trimmed_SJ.out.tab
19.24 kB
merge_iCLIP_CPEB_trimmed.bw
5.50 kB
STAR
merge_iCLIP_CPEB_trimmed_trimmed_SJ.out.tab
19.24 kB
merge_iCLIP_CPEB_trimmed_trimmed_unmapped.out.mate1.fastq.gz
116.49 MB
merge_iCLIP_CPEB_trimmed_trimmed.bam.bai
1.90 MB
merge_iCLIP_CPEB_trimmed_trimmed.bam
152.90 MB
merge_iCLIP_CPEB_trimmed_trimmed_stats.txt
1.80 kB
merge_iCLIP_CPEB_trimmed_trimmed.bw
5.50 kB
iCLIP reads proxy
merge_iCLIP_CPEB_mapped_to_genome.fastq.gz
116.49 MB
fastqc
Directory
iCount xlsites
merge_iCLIP_CPEB_premapped_to_ncRNAs_single.bed.gz
151.71 kB
merge_iCLIP_CPEB_premapped_to_ncRNAs_skipped.bam
1.38 kB
merge_iCLIP_CPEB_premapped_to_ncRNAs_reads_single.bed.gz
183.59 kB
merge_iCLIP_CPEB_premapped_to_ncRNAs_singleAndMulti.bed.gz
376.89 kB
merge_iCLIP_CPEB_premapped_to_ncRNAs_single.bedgraph
593.86 kB
iCount xlsites
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_skipped.bam
1.38 kB
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_singleAndMulti.bed.gz
376.90 kB
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_single.bedgraph
593.86 kB
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_reads_single.bed.gz
183.59 kB
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_single.bed.gz
151.71 kB
STAR
merge_iCLIP_CPEB_trimmed_mapped_to_genome_unmapped.out.mate1.fastq.gz
114.87 MB
merge_iCLIP_CPEB_trimmed_mapped_to_genome.bam.bai
1.31 MB
merge_iCLIP_CPEB_trimmed_mapped_to_genome.bam
130.48 MB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_stats.txt
1.80 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome.bw
4.39 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_SJ.out.tab
4.86 kB
iCount summary
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single_summary_type.tsv
440 B
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single_summary_subtype.tsv
732 B
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single_summary_gene.tsv
54.43 kB
iCount summary
merge_iCLIP_CPEB_mapped_to_genome_single_summary_gene.tsv
54.43 kB
merge_iCLIP_CPEB_mapped_to_genome_single_summary_type.tsv
440 B
merge_iCLIP_CPEB_mapped_to_genome_single_summary_subtype.tsv
732 B
STAR
merge_iCLIP_CPEB_mapped_to_genome_unmapped.out.mate1.fastq.gz
114.87 MB
merge_iCLIP_CPEB_mapped_to_genome.bam.bai
1.31 MB
merge_iCLIP_CPEB_mapped_to_genome.bam
130.48 MB
merge_iCLIP_CPEB_mapped_to_genome.bw
4.39 kB
merge_iCLIP_CPEB_mapped_to_genome_SJ.out.tab
4.86 kB
merge_iCLIP_CPEB_mapped_to_genome_stats.txt
1.80 kB
Paraclu
merge_iCLIP_CPEB_mapped_to_genome_single_peaks.bed.gz
76 B
iCount xlsites
merge_iCLIP_CPEB_mapped_to_genome_skipped.bam
7.11 kB
merge_iCLIP_CPEB_mapped_to_genome_single.bed.gz
17.00 kB
merge_iCLIP_CPEB_mapped_to_genome_singleAndMulti.bed.gz
38.83 kB
merge_iCLIP_CPEB_mapped_to_genome_reads_single.bed.gz
19.69 kB
merge_iCLIP_CPEB_mapped_to_genome_single.bedgraph
58.95 kB
iCount xlsites
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single.bedgraph
58.95 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single.bed.gz
17.01 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_reads_single.bed.gz
19.70 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_singleAndMulti.bed.gz
38.83 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_skipped.bam
7.06 kB

No Sample

FASTQ file (single-end)
fastqc
Directory
stderr.txt
995 B
merge_iCLIP_CPEB_fastqc.zip
515.82 kB
merge_iCLIP_CPEB.fastq.gz
148.50 MB
iCount summary
merge_iCLIP_CPEB_mapped_to_genome_single_summary_type.tsv
416 B
merge_iCLIP_CPEB_mapped_to_genome_single_summary_subtype.tsv
757 B
merge_iCLIP_CPEB_mapped_to_genome_single_summary_gene.tsv
136.00 kB
iCount RNA-maps
merge_iCLIP_CPEB_mapped_to_genome_single.tar.gz
311.30 kB
Paraclu
merge_iCLIP_CPEB_mapped_to_genome_single_peaks.bed.gz
76 B
PEKA
4mer analysis of merge_iCLIP_CPEB_mapped_to_genome.tar.gz
158 B
Cutadapt (single-end)
fastqc
Directory
report.txt
653 B
merge_iCLIP_CPEB_trimmed.fastq.gz
152.45 MB
Cutadapt (single-end)
fastqc
Directory
merge_iCLIP_CPEB_trimmed_trimmed.fastq.gz
152.45 MB
report.txt
662 B
iCount RNA-maps
merge_iCLIP_CPEB_mapped_to_genome_single.tar.gz
264.11 kB
PEKA
4mer analysis of merge_iCLIP_CPEB_mapped_to_genome.tar.gz
158 B
iCLIP reads proxy
fastqc
Directory
merge_iCLIP_CPEB_trimmed_mapped_to_genome.fastq.gz
116.49 MB
Paraclu
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single_peaks.bed.gz
84 B
iCount RNA-maps
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single.tar.gz
264.68 kB
PEKA
4mer analysis of merge_iCLIP_CPEB_trimmed_mapped_to_genome.tar.gz
163 B
Cutadapt (single-end)
fastqc
Directory
merge_iCLIP_CPEB_trimmed.fastq.gz
152.45 MB
report.txt
653 B
STAR
merge_iCLIP_CPEB_trimmed_unmapped.out.mate1.fastq.gz
132.12 MB
merge_iCLIP_CPEB_trimmed.bam
153.62 MB
merge_iCLIP_CPEB_trimmed.bam.bai
1.42 MB
merge_iCLIP_CPEB_trimmed_SJ.out.tab
12.17 kB
merge_iCLIP_CPEB_trimmed.bw
4.56 kB
merge_iCLIP_CPEB_trimmed_stats.txt
1.80 kB
iCount xlsites
merge_iCLIP_CPEB_mapped_to_genome_skipped.bam
15.38 kB
merge_iCLIP_CPEB_mapped_to_genome_single.bed.gz
41.07 kB
merge_iCLIP_CPEB_mapped_to_genome_single.bedgraph
145.53 kB
merge_iCLIP_CPEB_mapped_to_genome_singleAndMulti.bed.gz
118.33 kB
merge_iCLIP_CPEB_mapped_to_genome_reads_single.bed.gz
47.39 kB
STAR
merge_iCLIP_CPEB_trimmed_unmapped.out.mate1.fastq.gz
116.49 MB
merge_iCLIP_CPEB_trimmed.bam.bai
1.90 MB
merge_iCLIP_CPEB_trimmed.bam
152.91 MB
merge_iCLIP_CPEB_trimmed_stats.txt
1.80 kB
merge_iCLIP_CPEB_trimmed_SJ.out.tab
19.24 kB
merge_iCLIP_CPEB_trimmed.bw
5.50 kB
STAR
merge_iCLIP_CPEB_trimmed_trimmed_SJ.out.tab
19.24 kB
merge_iCLIP_CPEB_trimmed_trimmed_unmapped.out.mate1.fastq.gz
116.49 MB
merge_iCLIP_CPEB_trimmed_trimmed.bam.bai
1.90 MB
merge_iCLIP_CPEB_trimmed_trimmed.bam
152.90 MB
merge_iCLIP_CPEB_trimmed_trimmed_stats.txt
1.80 kB
merge_iCLIP_CPEB_trimmed_trimmed.bw
5.50 kB
iCLIP reads proxy
merge_iCLIP_CPEB_mapped_to_genome.fastq.gz
116.49 MB
fastqc
Directory
iCount xlsites
merge_iCLIP_CPEB_premapped_to_ncRNAs_single.bed.gz
151.71 kB
merge_iCLIP_CPEB_premapped_to_ncRNAs_skipped.bam
1.38 kB
merge_iCLIP_CPEB_premapped_to_ncRNAs_reads_single.bed.gz
183.59 kB
merge_iCLIP_CPEB_premapped_to_ncRNAs_singleAndMulti.bed.gz
376.89 kB
merge_iCLIP_CPEB_premapped_to_ncRNAs_single.bedgraph
593.86 kB
iCount xlsites
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_skipped.bam
1.38 kB
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_singleAndMulti.bed.gz
376.90 kB
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_single.bedgraph
593.86 kB
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_reads_single.bed.gz
183.59 kB
merge_iCLIP_CPEB_trimmed_premapped_to_ncRNAs_single.bed.gz
151.71 kB
STAR
merge_iCLIP_CPEB_trimmed_mapped_to_genome_unmapped.out.mate1.fastq.gz
114.87 MB
merge_iCLIP_CPEB_trimmed_mapped_to_genome.bam.bai
1.31 MB
merge_iCLIP_CPEB_trimmed_mapped_to_genome.bam
130.48 MB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_stats.txt
1.80 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome.bw
4.39 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_SJ.out.tab
4.86 kB
iCount summary
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single_summary_type.tsv
440 B
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single_summary_subtype.tsv
732 B
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single_summary_gene.tsv
54.43 kB
iCount summary
merge_iCLIP_CPEB_mapped_to_genome_single_summary_gene.tsv
54.43 kB
merge_iCLIP_CPEB_mapped_to_genome_single_summary_type.tsv
440 B
merge_iCLIP_CPEB_mapped_to_genome_single_summary_subtype.tsv
732 B
STAR
merge_iCLIP_CPEB_mapped_to_genome_unmapped.out.mate1.fastq.gz
114.87 MB
merge_iCLIP_CPEB_mapped_to_genome.bam.bai
1.31 MB
merge_iCLIP_CPEB_mapped_to_genome.bam
130.48 MB
merge_iCLIP_CPEB_mapped_to_genome.bw
4.39 kB
merge_iCLIP_CPEB_mapped_to_genome_SJ.out.tab
4.86 kB
merge_iCLIP_CPEB_mapped_to_genome_stats.txt
1.80 kB
Paraclu
merge_iCLIP_CPEB_mapped_to_genome_single_peaks.bed.gz
76 B
iCount xlsites
merge_iCLIP_CPEB_mapped_to_genome_skipped.bam
7.11 kB
merge_iCLIP_CPEB_mapped_to_genome_single.bed.gz
17.00 kB
merge_iCLIP_CPEB_mapped_to_genome_singleAndMulti.bed.gz
38.83 kB
merge_iCLIP_CPEB_mapped_to_genome_reads_single.bed.gz
19.69 kB
merge_iCLIP_CPEB_mapped_to_genome_single.bedgraph
58.95 kB
iCount xlsites
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single.bedgraph
58.95 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_single.bed.gz
17.01 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_reads_single.bed.gz
19.70 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_singleAndMulti.bed.gz
38.83 kB
merge_iCLIP_CPEB_trimmed_mapped_to_genome_skipped.bam
7.06 kB