Back to Archive

Folder iconGenomes and Annotations

Janez Kokosar
April 26, 2017
A meta collection that holds common Genome and Annotation files

No Sample

GTF file
seq
Directory
Rattus_norvegicus.Rnor_6.0.ercc.sirv.100.gtf
267.12 MB
tracks
Directory
Rattus_norvegicus.Rnor_6.0.ercc.sirv.100_sorted.gtf.idx
1.34 MB
Rattus_norvegicus.Rnor_6.0.ercc.sirv.100_sorted.gtf
267.12 MB
trackList.json
481 B
names
Directory
Genome
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
genome-hg19.fasta.gz
893.64 MB
genome-hg19.fasta
2.94 GB
genome-hg19.fasta.fai
783 B
seq
Directory
genome-hg19.dict
2.28 kB
bowtie_index
Directory
bowtie2_index
Directory
WALT genome index
walt_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.fai
32.15 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta
2.72 GB
FASTA file
Rattus_norvegicus_globin_reference.fasta
29.90 kB
Rattus_norvegicus_globin_reference.fasta.fai
315 B
Rattus_norvegicus_globin_reference.fasta.gz
7.75 kB
Rattus_norvegicus_globin_reference.dict
1.11 kB
STAR genome index
star_index
Directory
Rattus_norvegicus_globin_reference.fasta.fai
315 B
Rattus_norvegicus_globin_reference.fasta.gz
7.75 kB
Rattus_norvegicus_globin_reference.fasta
29.90 kB
Salmon Index
salmon_index
Directory
Salmon Index
salmon_index
Directory
File
Homo_sapiens.GRCh38.ensembl.92_decoys.txt
1.88 kB
File
Homo_sapiens.GRCh38.ensembl.100_decoys.txt
1.88 kB
Salmon Index
salmon_index
Directory
File
Mus_musculus.GRCm38.ensembl.92_decoys.txt
539 B
Salmon Index
salmon_index
Directory
Salmon Index
salmon_index
Directory
File
Rattus_norvegicus.Rnor_6.0.ensembl.92_decoys.txt
11.21 kB
Salmon Index
salmon_index
Directory
File
Rattus_norvegicus.Rnor_6.0.ensembl.100_decoys.txt
11.21 kB
Salmon Index
salmon_index
Directory
Salmon Index
salmon_index
Directory
Salmon Index
salmon_index
Directory
FASTA file
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.gentrome.92.fasta
3.23 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.gentrome.92.fasta.fai
7.02 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.gentrome.92.dict
29.08 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.gentrome.92.fasta.gz
901.22 MB
FASTA file
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.gentrome.92.fasta.gz
818.06 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.gentrome.92.fasta.fai
5.04 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.gentrome.92.fasta
2.81 GB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.gentrome.92.dict
19.70 MB
FASTA file
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.gentrome.100.fasta.fai
5.32 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.gentrome.100.fasta
2.82 GB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.gentrome.100.dict
20.92 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.gentrome.100.fasta.gz
820.44 MB
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.gentrome.92.fasta
2.79 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.gentrome.92.fasta.gz
812.76 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.gentrome.92.fasta.fai
1.54 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.gentrome.92.dict
6.09 MB
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.gentrome.100.dict
6.13 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.gentrome.100.fasta.fai
1.54 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.gentrome.100.fasta
2.79 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.gentrome.100.fasta.gz
812.77 MB
STAR genome index
star_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.fai
9.37 kB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.gz
841.38 MB
HISAT2 genome index
hisat2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.fai
9.37 kB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.gz
841.38 MB
BWA genome index
BWA_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.gz
841.38 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.fai
9.37 kB
WALT genome index
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.92.fasta.fai
6.29 kB
walt_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.92.fasta.gz
841.30 MB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.92.fasta
2.94 GB
WALT genome index
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta
2.93 GB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.fai
6.26 kB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.gz
841.29 MB
walt_index
Directory
WALT genome index
walt_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.100.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.100.fasta.gz
841.30 MB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.100.fasta.fai
6.29 kB
STAR genome index
star_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.fai
5.21 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.gz
769.58 MB
HISAT2 genome index
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.gz
769.49 MB
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta
2.59 GB
hisat2_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.fai
2.09 kB
BWA genome index
BWA_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.fai
32.15 kB
BWA genome index
BWA_index
Directory
genome-rn6-ercc.sirv.fasta
2.64 GB
genome-rn6-ercc.sirv.fasta.gz
831.13 MB
genome-rn6-ercc.sirv.fasta.fai
3.81 kB
FASTA file
adapters-illumina-bbmap.fasta.gz
1.68 kB
adapters-illumina-bbmap.fasta.fai
7.20 kB
GTF file
Homo_sapiens.GRCh38.92.gtf
1.07 GB
trackList.json
481 B
tracks
Directory
Homo_sapiens.GRCh38.92_sorted.gtf.idx
1.47 MB
Homo_sapiens.GRCh38.92_sorted.gtf
1.07 GB
names
Directory
seq
Directory
STAR genome index
star_index
Directory
GTF file
tracks
Directory
Homo_sapiens.GRCh38.92.ercc.sirv.gtf
1.07 GB
Homo_sapiens.GRCh38.92.ercc.sirv_sorted.gtf
1.07 GB
Homo_sapiens.GRCh38.92.ercc.sirv_sorted.gtf.idx
1.48 MB
trackList.json
481 B
names
Directory
seq
Directory
STAR genome index
star_index
Directory
GTF file
tracks
Directory
Homo_sapiens_UCSC_hg38_ercc_sirv.gtf
144.50 MB
Homo_sapiens_UCSC_hg38_ercc_sirv_sorted.gtf
144.50 MB
Homo_sapiens_UCSC_hg38_ercc_sirv_sorted.gtf.idx
1.52 MB
trackList.json
481 B
names
Directory
seq
Directory
FASTA file
Homo_sapiens_rRNA.fasta.gz
5.18 kB
Homo_sapiens_rRNA.fasta.fai
167 B
FASTA file
Homo_sapiens_globin_reference.fasta.gz
78.82 kB
Homo_sapiens_globin_reference.fasta.fai
191 B
STAR genome index
star_index
Directory
GTF file
tracks
Directory
Mus_musculus.GRCm38.92.ercc.sirv.gtf
737.00 MB
Mus_musculus.GRCm38.92.ercc.sirv_sorted.gtf.idx
1.30 MB
Mus_musculus.GRCm38.92.ercc.sirv_sorted.gtf
737.00 MB
trackList.json
481 B
names
Directory
seq
Directory
FASTA file
Homo_sapiens.GRCh38.cdna.all.ercc.sirv.fasta.gz
47.63 MB
Homo_sapiens.GRCh38.cdna.all.ercc.sirv.fasta.fai
4.44 MB
GTF file
tracks
Directory
annotation-mm10_sorted.gtf
90.53 MB
annotation-mm10_sorted.gtf.idx
1.30 MB
annotation-mm10.gtf
90.53 MB
trackList.json
481 B
names
Directory
seq
Directory
FASTA file
Mus_musculus_rRNA.fasta.fai
167 B
Mus_musculus_rRNA.fasta.gz
12.13 kB
FASTA file
Mus_musculus_globin_reference.fasta.gz
1.75 kB
Mus_musculus_globin_reference.fasta.fai
171 B
Genome
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.ercc.sirv.dict
36.46 MB
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.ercc.sirv.fasta.fai
9.84 MB
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.ercc.sirv.fasta
3.08 GB
seq
Directory
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.ercc.sirv.fasta.gz
882.50 MB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
walt_index
Directory
subread_index
Directory
FASTA file
Rattus_norvegicus.Rnor_6.0.cdna.all.fasta.gz
19.68 MB
Rattus_norvegicus.Rnor_6.0.cdna.all.fasta.fai
1.23 MB
FASTA file
Rattus_norvegicus_rRNA.fasta.fai
126 B
Rattus_norvegicus_rRNA.fasta.gz
3.89 kB
BED file
Homo_sapiens_UCSC_hg38_exons_sorted.bed.gz.tbi
465.48 kB
Homo_sapiens_UCSC_hg38_exons_sorted.bed
9.05 MB
Homo_sapiens_UCSC_hg38_exons_sorted.bed.gz
2.16 MB
BED file
Homo_sapiens.GRCh38.92.exons.sorted.bed.gz
2.89 MB
Homo_sapiens.GRCh38.92.exons.sorted.bed
12.96 MB
Homo_sapiens.GRCh38.92.exons.sorted.bed.gz.tbi
571.29 kB
BWA genome index
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta
2.93 GB
BWA_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.gz
841.29 MB
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.fai
6.26 kB
BWA genome index
BWA_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.gz
841.38 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.fai
9.37 kB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta
2.94 GB
GTF file
Macaca_mulatta.Mmul_10.100_sorted.gtf
502.83 MB
tracks
Directory
trackList.json
481 B
Macaca_mulatta.Mmul_10.100_sorted.gtf.idx
1.38 MB
Macaca_mulatta.Mmul_10.100.gtf
502.83 MB
names
Directory
seq
Directory
GTF file
Rattus_norvegicus.Rnor_6.0.100.gtf
267.08 MB
tracks
Directory
Rattus_norvegicus.Rnor_6.0.100_sorted.gtf.idx
1.33 MB
trackList.json
481 B
Rattus_norvegicus.Rnor_6.0.100_sorted.gtf
267.08 MB
names
Directory
seq
Directory
FASTA file
genome-rn6-ercc.sirv.fasta
2.64 GB
genome-rn6-ercc.sirv.fasta.gz
831.13 MB
genome-rn6-ercc.sirv.dict
12.18 kB
genome-rn6-ercc.sirv.fasta.fai
3.81 kB
FASTA file
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.gz
841.29 MB
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.fai
6.26 kB
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta
2.93 GB
Homo_sapiens.GRCh38.dna.primary_assembly.92.dict
23.90 kB
FASTA file
Homo_sapiens.GRCh38.cdna.all.100.fasta
358.66 MB
Homo_sapiens.GRCh38.cdna.all.100.fasta.fai
6.94 MB
Homo_sapiens.GRCh38.cdna.all.100.fasta.gz
66.70 MB
Homo_sapiens.GRCh38.cdna.all.100.dict
22.08 MB
GTF file
tracks
Directory
trackList.json
481 B
Homo_sapiens.GRCh38.100_sorted.gtf.idx
1.47 MB
Homo_sapiens.GRCh38.100.gtf
1.15 GB
Homo_sapiens.GRCh38.100_sorted.gtf
1.15 GB
names
Directory
seq
Directory
FASTA file
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.gz
841.38 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.fai
9.37 kB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.dict
38.01 kB
FASTA file
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.gz
841.38 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.fai
9.37 kB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.dict
39.16 kB
FASTA file
Homo_sapiens.GRCh38.extracted.cdna.ercc.sirv.100.fasta
356.53 MB
Homo_sapiens.GRCh38.extracted.cdna.ercc.sirv.100.dict
29.46 MB
Homo_sapiens.GRCh38.extracted.cdna.ercc.sirv.100.fasta.gz
68.26 MB
Homo_sapiens.GRCh38.extracted.cdna.ercc.sirv.100.fasta.fai
7.86 MB
GTF file
tracks
Directory
Homo_sapiens.GRCh38.100.ercc.sirv_sorted.gtf
1.15 GB
Homo_sapiens.GRCh38.100.ercc.sirv_sorted.gtf.idx
1.48 MB
Homo_sapiens.GRCh38.100.ercc.sirv.gtf
1.15 GB
trackList.json
481 B
names
Directory
seq
Directory
FASTA file
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.92.fasta.gz
841.30 MB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.92.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.92.fasta.fai
6.29 kB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.92.dict
27.83 kB
FASTA file
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.100.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.100.fasta.fai
6.29 kB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.100.fasta.gz
841.30 MB
Homo_sapiens.GRCh38.dna.primary_assembly.unmethylated_J02459.100.dict
28.02 kB
FASTA file
Homo_sapiens_USCS_hg38_ercc_sirv.dict
34.30 kB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta
2.95 GB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.gz
905.78 MB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.fai
10.74 kB
GTF file
Mus_musculus.GRCm38.100.gtf
988.88 MB
Mus_musculus.GRCm38.100_sorted.gtf
988.88 MB
tracks
Directory
Mus_musculus.GRCm38.100_sorted.gtf.idx
1.30 MB
trackList.json
481 B
seq
Directory
names
Directory
FASTA file
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.92.dict
8.11 kB
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.fai
2.09 kB
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.gz
769.49 MB
FASTA file
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.gz
769.58 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.dict
21.99 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.fai
5.21 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta
2.59 GB
FASTA file
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.dict
21.34 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.gz
769.58 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.fai
5.21 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta
2.59 GB
FASTA file
Mus_musculus.GRCm38.cdna.all.100.fasta
241.83 MB
Mus_musculus.GRCm38.cdna.all.100.fasta.gz
49.82 MB
Mus_musculus.GRCm38.cdna.all.100.dict
14.19 MB
Mus_musculus.GRCm38.cdna.all.100.fasta.fai
4.69 MB
Genome
seq
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.fasta.fai
35.06 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.fasta.gz
793.10 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.dict
131.20 kB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
FASTA file
Mus_musculus.GRCm38.extracted.cdna.ercc.sirv.100.fasta.fai
5.32 MB
Mus_musculus.GRCm38.extracted.cdna.ercc.sirv.100.fasta
239.98 MB
Mus_musculus.GRCm38.extracted.cdna.ercc.sirv.100.dict
18.86 MB
Mus_musculus.GRCm38.extracted.cdna.ercc.sirv.100.fasta.gz
50.95 MB
FASTA file
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.fasta.fai
2.12 kB
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.fasta.gz
769.50 MB
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.dict
9.34 kB
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.fasta
2.59 GB
GTF file
Mus_musculus.GRCm38.ercc.sirv.100_sorted.gtf.idx
1.30 MB
tracks
Directory
Mus_musculus.GRCm38.ercc.sirv.100.gtf
988.93 MB
Mus_musculus.GRCm38.ercc.sirv.100_sorted.gtf
988.93 MB
trackList.json
481 B
names
Directory
seq
Directory
FASTA file
genome-mm10.fasta
2.59 GB
genome-mm10.fasta.fai
688 B
genome-mm10.fasta.gz
828.76 MB
genome-mm10.dict
2.01 kB
FASTA file
genome-mm10-ercc.sirv.fasta
2.59 GB
genome-mm10-ercc.sirv.fasta.gz
828.85 MB
genome-mm10-ercc.sirv.fasta.fai
3.79 kB
genome-mm10-ercc.sirv.dict
12.21 kB
FASTA file
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.100.fasta.gz
769.50 MB
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.100.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.100.fasta.fai
2.12 kB
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.100.dict
9.60 kB
FASTA file
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.97.fasta.gz
882.91 MB
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.97.fasta
3.08 GB
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.97.fasta.fai
9.83 MB
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.97.dict
34.54 MB
FASTA file
Macaca_mulatta.Mmul_10.dna.toplevel.100.fasta.gz
833.26 MB
Macaca_mulatta.Mmul_10.dna.toplevel.100.fasta
2.81 GB
Macaca_mulatta.Mmul_10.dna.toplevel.100.fasta.fai
108.46 kB
Macaca_mulatta.Mmul_10.dna.toplevel.100.dict
363.92 kB
GTF file
Macaca_mulatta.Mmul_10.ercc.sirv.100.gtf
502.87 MB
tracks
Directory
Macaca_mulatta.Mmul_10.ercc.sirv.100_sorted.gtf
502.87 MB
Macaca_mulatta.Mmul_10.ercc.sirv.100_sorted.gtf.idx
1.38 MB
trackList.json
481 B
seq
Directory
names
Directory
FASTA file
Macaca_mulatta.Mmul_10.dna.toplevel.ercc.sirv.100.fasta
2.81 GB
Macaca_mulatta.Mmul_10.dna.toplevel.ercc.sirv.100.fasta.gz
833.35 MB
Macaca_mulatta.Mmul_10.dna.toplevel.ercc.sirv.100.fasta.fai
111.57 kB
Macaca_mulatta.Mmul_10.dna.toplevel.ercc.sirv.100.dict
405.31 kB
FASTA file
Rattus_norvegicus.Rnor_6.0.cdna.all.100.fasta
73.43 MB
Rattus_norvegicus.Rnor_6.0.cdna.all.100.dict
3.98 MB
Rattus_norvegicus.Rnor_6.0.cdna.all.100.fasta.gz
19.71 MB
Rattus_norvegicus.Rnor_6.0.cdna.all.100.fasta.fai
1.23 MB
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.dict
118.91 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.fai
32.15 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.gz
793.89 MB
FASTA file
Rattus_norvegicus.Rnor_6.0.extracted.cdna.ercc.sirv.100.fasta.gz
18.87 MB
Rattus_norvegicus.Rnor_6.0.extracted.cdna.ercc.sirv.100.fasta
71.64 MB
Rattus_norvegicus.Rnor_6.0.extracted.cdna.ercc.sirv.100.fasta.fai
1.51 MB
Rattus_norvegicus.Rnor_6.0.extracted.cdna.ercc.sirv.100.dict
5.72 MB
Bowtie2 genome index
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta
2.93 GB
bowtie2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.gz
841.29 MB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.fai
6.26 kB
HISAT2 genome index
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta
2.93 GB
hisat2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.gz
841.29 MB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.fai
6.26 kB
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.gz
793.98 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.fai
35.26 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.dict
137.19 kB
Gene expression indices
rsem
Directory
HISAT2 genome index
hisat2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.gz
841.38 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.fai
9.37 kB
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.gz
793.98 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.fai
35.27 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.dict
141.31 kB
WALT genome index
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.gz
841.29 MB
walt_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta
2.93 GB
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.fai
6.26 kB
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.fasta.gz
793.91 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.fasta.fai
32.18 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.dict
133.97 kB
Bowtie2 genome index
bowtie2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.gz
841.38 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.100.fasta.fai
9.37 kB
Bowtie2 genome index
bowtie2_index
Directory
Homo_sapiens_USCS_hg38.fasta.fai
7.62 kB
Homo_sapiens_USCS_hg38.fasta.gz
905.69 MB
Homo_sapiens_USCS_hg38.fasta
2.94 GB
BWA genome index
genome-hg19.fasta
2.94 GB
genome-hg19.fasta.gz
894.13 MB
BWA_index
Directory
genome-hg19.fasta.fai
783 B
HISAT2 genome index
hisat2_index
Directory
genome-hg19.fasta.gz
894.13 MB
genome-hg19.fasta
2.94 GB
genome-hg19.fasta.fai
783 B
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.100.fasta.fai
32.18 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.100.dict
137.70 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.100.fasta.gz
793.91 MB
HISAT2 genome index
Homo_sapiens_USCS_hg38.fasta.gz
905.69 MB
hisat2_index
Directory
Homo_sapiens_USCS_hg38.fasta
2.94 GB
Homo_sapiens_USCS_hg38.fasta.fai
7.62 kB
FASTA file
genome-rn6.dict
2.08 kB
genome-rn6.fasta
2.64 GB
genome-rn6.fasta.gz
831.04 MB
genome-rn6.fasta.fai
715 B
BWA genome index
BWA_index
Directory
Homo_sapiens_USCS_hg38.fasta
2.94 GB
Homo_sapiens_USCS_hg38.fasta.gz
905.69 MB
Homo_sapiens_USCS_hg38.fasta.fai
7.62 kB
Bowtie2 genome index
genome-hg19-ercc.sirv.fasta.fai
3.88 kB
bowtie2_index
Directory
genome-hg19-ercc.sirv.fasta.gz
894.22 MB
genome-hg19-ercc.sirv.fasta
2.94 GB
HISAT2 genome index
hisat2_index
Directory
genome-hg19-ercc.sirv.fasta.gz
894.22 MB
genome-hg19-ercc.sirv.fasta
2.94 GB
genome-hg19-ercc.sirv.fasta.fai
3.88 kB
Bowtie2 genome index
bowtie2_index
Directory
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.gz
905.78 MB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.fai
10.74 kB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta
2.95 GB
BWA genome index
genome-hg19-ercc.sirv.fasta.gz
894.22 MB
genome-hg19-ercc.sirv.fasta
2.94 GB
BWA_index
Directory
genome-hg19-ercc.sirv.fasta.fai
3.88 kB
HISAT2 genome index
hisat2_index
Directory
Homo_sapiens_USCS_hg38_ercc_sirv.fasta
2.95 GB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.fai
10.74 kB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.gz
905.78 MB
Bowtie2 genome index
bowtie2_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.fai
2.09 kB
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.gz
769.49 MB
BWA genome index
BWA_index
Directory
Homo_sapiens_USCS_hg38_ercc_sirv.fasta
2.95 GB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.fai
10.74 kB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.gz
905.78 MB
BWA genome index
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.gz
769.49 MB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.fai
2.09 kB
BWA_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta
2.59 GB
BWA genome index
BWA_index
Directory
genome-b37.fasta.fai
2.68 kB
genome-b37.fasta.gz
830.47 MB
genome-b37.fasta
2.94 GB
Bowtie2 genome index
bowtie2_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.fai
2.09 kB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.gz
769.49 MB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta
2.59 GB
HISAT2 genome index
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.gz
769.49 MB
hisat2_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.fai
2.09 kB
STAR genome index
star_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.fai
2.09 kB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.gz
769.49 MB
Gene expression indices
rsem
Directory
Bowtie2 genome index
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta
2.59 GB
bowtie2_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.gz
769.58 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.fai
5.21 kB
BWA genome index
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.fai
5.21 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta
2.59 GB
BWA_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.gz
769.58 MB
HISAT2 genome index
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.gz
769.58 MB
hisat2_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.fai
5.21 kB
Bowtie2 genome index
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta
2.59 GB
bowtie2_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.fai
5.21 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.gz
769.58 MB
WALT genome index
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.gz
769.49 MB
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta
2.59 GB
walt_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.fai
2.09 kB
HISAT2 genome index
hisat2_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.gz
769.58 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.fai
5.21 kB
BWA genome index
BWA_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.gz
769.58 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.100.fasta.fai
5.21 kB
WALT genome index
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.gz
769.49 MB
walt_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.fai
2.09 kB
Bowtie2 genome index
bowtie2_index
Directory
genome-mm10.fasta.fai
688 B
genome-mm10.fasta
2.59 GB
genome-mm10.fasta.gz
828.76 MB
HISAT2 genome index
hisat2_index
Directory
genome-mm10.fasta
2.59 GB
genome-mm10.fasta.fai
688 B
genome-mm10.fasta.gz
828.76 MB
BWA genome index
genome-mm10.fasta.gz
828.76 MB
genome-mm10.fasta
2.59 GB
BWA_index
Directory
genome-mm10.fasta.fai
688 B
HISAT2 genome index
hisat2_index
Directory
genome-mm10-ercc.sirv.fasta.gz
828.85 MB
genome-mm10-ercc.sirv.fasta.fai
3.79 kB
genome-mm10-ercc.sirv.fasta
2.59 GB
BWA genome index
BWA_index
Directory
genome-mm10-ercc.sirv.fasta
2.59 GB
genome-mm10-ercc.sirv.fasta.fai
3.79 kB
genome-mm10-ercc.sirv.fasta.gz
828.85 MB
STAR genome index
Macaca_mulatta.Mmul_10.dna.toplevel.100.fasta.gz
833.26 MB
star_index
Directory
Macaca_mulatta.Mmul_10.dna.toplevel.100.fasta
2.81 GB
Macaca_mulatta.Mmul_10.dna.toplevel.100.fasta.fai
108.46 kB
STAR genome index
star_index
Directory
Macaca_mulatta.Mmul_10.dna.toplevel.ercc.sirv.100.fasta.gz
833.35 MB
Macaca_mulatta.Mmul_10.dna.toplevel.ercc.sirv.100.fasta
2.81 GB
Macaca_mulatta.Mmul_10.dna.toplevel.ercc.sirv.100.fasta.fai
111.57 kB
Bowtie2 genome index
bowtie2_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.fai
32.15 kB
HISAT2 genome index
hisat2_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.fai
32.15 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta
2.72 GB
BWA genome index
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta
2.72 GB
BWA_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.fai
32.15 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.gz
793.89 MB
STAR genome index
star_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.fai
32.15 kB
WALT genome index
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.100.fasta
2.59 GB
walt_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.100.fasta.fai
2.12 kB
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.100.fasta.gz
769.50 MB
Bowtie2 genome index
bowtie2_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.fai
32.15 kB
HISAT2 genome index
hisat2_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.fai
32.15 kB
Gene expression indices
rsem
Directory
HISAT2 genome index
hisat2_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.gz
793.98 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.fai
35.26 kB
STAR genome index
star_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.fai
35.27 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.gz
793.98 MB
Bowtie2 genome index
bowtie2_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.gz
793.98 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.fai
35.27 kB
BWA genome index
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.gz
793.98 MB
BWA_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.fai
35.27 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta
2.72 GB
WALT genome index
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta
2.72 GB
walt_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.100.fasta.fai
32.15 kB
Bowtie2 genome index
bowtie2_index
Directory
genome-rn6-ercc.sirv.fasta
2.64 GB
genome-rn6-ercc.sirv.fasta.gz
831.13 MB
genome-rn6-ercc.sirv.fasta.fai
3.81 kB
WALT genome index
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.fasta
2.72 GB
walt_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.fasta.gz
793.91 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.fasta.fai
32.18 kB
HISAT2 genome index
genome-rn6-ercc.sirv.fasta
2.64 GB
hisat2_index
Directory
genome-rn6-ercc.sirv.fasta.gz
831.13 MB
genome-rn6-ercc.sirv.fasta.fai
3.81 kB
Upload nucleotide sequence(s) (FASTA)
GRCm38.p5.genome.fasta.fai
3.55 kB
GRCm38.p5.genome.fasta.gz
772.53 MB
Genome
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.fasta.gz
840.42 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.fasta.fai
9.17 kB
seq
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.dict
35.73 kB
bowtie2_index
Directory
bowtie_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
Genome
genome-hg19-ercc.fasta.fai
3.68 kB
genome-hg19-ercc.fasta
2.94 GB
genome-hg19-ercc.fasta.gz
893.66 MB
genome-hg19-ercc.dict
11.25 kB
seq
Directory
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
Genome
seq
Directory
Mus_musculus.GRCm38.dna.primary_assembly.fasta.fai
2.09 kB
Mus_musculus.GRCm38.dna.primary_assembly.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.fasta.gz
768.65 MB
Mus_musculus.GRCm38.dna.primary_assembly.dict
7.92 kB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
Genome
Mus_musculus.GRCm38.dna.primary_assembly.ercc.fasta.gz
768.67 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.fasta.fai
5.01 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.dict
19.69 kB
seq
Directory
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
Genome
seq
Directory
genome-rn6.fasta
2.64 GB
genome-rn6.dict
2.08 kB
genome-rn6.fasta.fai
715 B
genome-rn6.fasta.gz
830.54 MB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
GAF file
gaf_obj
Directory
goa_human.gaf.txt.gz
5.14 MB
Genome
genome-mm10-ercc.fasta.gz
828.25 MB
seq
Directory
genome-mm10-ercc.fasta.fai
3.59 kB
genome-mm10-ercc.fasta
2.59 GB
genome-mm10-ercc.dict
10.96 kB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
GAF file
gene_association.mgi.txt.gz
4.80 MB
gaf_obj
Directory
GAF file
gaf_obj
Directory
gene_association.rgd.txt.gz
6.52 MB
Genome
genome-mm10-ercc.sirv.fasta.gz
828.31 MB
genome-mm10-ercc.sirv.fasta
2.59 GB
genome-mm10-ercc.sirv.dict
12.21 kB
seq
Directory
genome-mm10-ercc.sirv.fasta.fai
3.79 kB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
walt_index
Directory
subread_index
Directory
Genome
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta.fai
32.15 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.dict
115.18 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta.gz
793.08 MB
seq
Directory
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
Genome
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta
2.72 GB
seq
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.fai
35.26 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.dict
137.19 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.gz
793.16 MB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
GTF file
tracks
Directory
Mus_musculus.GRCm38.92_sorted.gtf
736.96 MB
Mus_musculus.GRCm38.92.gtf
736.96 MB
trackList.json
481 B
Mus_musculus.GRCm38.92_sorted.gtf.idx
1.30 MB
seq
Directory
names
Directory
FASTA file
Escherichia_phage_Lambda.unmethylated_dna.J02459.1.fasta
48.09 kB
Escherichia_phage_Lambda.unmethylated_dna.J02459.1.fasta.fai
24 B
Escherichia_phage_Lambda.unmethylated_dna.J02459.1.fasta.gz
15.01 kB
Escherichia_phage_Lambda.unmethylated_dna.J02459.1.dict
143 B
HISAT2 genome index
hisat2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.fai
6.26 kB
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.gz
841.29 MB
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta
2.93 GB
FASTA file
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.gz
841.29 MB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta
2.93 GB
Homo_sapiens.GRCh38.dna.primary_assembly.100.dict
24.09 kB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.fai
6.26 kB
Bowtie2 genome index
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta
2.93 GB
bowtie2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.fai
6.26 kB
Homo_sapiens.GRCh38.dna.primary_assembly.92.fasta.gz
841.29 MB
STAR genome index
star_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta
2.93 GB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.gz
841.29 MB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.fai
6.26 kB
Bowtie2 genome index
bowtie2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.gz
841.38 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.fai
9.37 kB
BWA genome index
BWA_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.fai
6.26 kB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta
2.93 GB
Homo_sapiens.GRCh38.dna.primary_assembly.100.fasta.gz
841.29 MB
FASTA file
genome-hg19.fasta
2.94 GB
genome-hg19.fasta.gz
894.13 MB
genome-hg19.fasta.fai
783 B
genome-hg19.dict
2.28 kB
Bowtie2 genome index
genome-hg19.fasta.gz
894.13 MB
bowtie2_index
Directory
genome-hg19.fasta
2.94 GB
genome-hg19.fasta.fai
783 B
FASTA file
Homo_sapiens_USCS_hg38.fasta
2.94 GB
Homo_sapiens_USCS_hg38.fasta.gz
905.69 MB
Homo_sapiens_USCS_hg38.dict
21.35 kB
Homo_sapiens_USCS_hg38.fasta.fai
7.62 kB
FASTA file
genome-hg19-ercc.sirv.fasta.gz
894.22 MB
genome-hg19-ercc.sirv.fasta.fai
3.88 kB
genome-hg19-ercc.sirv.dict
12.51 kB
genome-hg19-ercc.sirv.fasta
2.94 GB
FASTA file
genome-b37.fasta.gz
830.47 MB
genome-b37.fasta
2.94 GB
genome-b37.fasta.fai
2.68 kB
genome-b37.dict
7.63 kB
FASTA file
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.fai
2.09 kB
Mus_musculus.GRCm38.dna.primary_assembly.100.dict
8.17 kB
Mus_musculus.GRCm38.dna.primary_assembly.100.fasta.gz
769.49 MB
Bowtie2 genome index
bowtie2_index
Directory
genome-mm10-ercc.sirv.fasta
2.59 GB
genome-mm10-ercc.sirv.fasta.fai
3.79 kB
genome-mm10-ercc.sirv.fasta.gz
828.85 MB
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.gz
793.89 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta.fai
32.15 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.92.dict
117.97 kB
Bowtie2 genome index
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.fai
35.26 kB
bowtie2_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.gz
793.98 MB
BWA genome index
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.gz
793.98 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.fai
35.26 kB
BWA_index
Directory
HISAT2 genome index
hisat2_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.gz
793.98 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.100.fasta.fai
35.27 kB
Bowtie2 genome index
genome-rn6.fasta.fai
715 B
genome-rn6.fasta.gz
831.04 MB
genome-rn6.fasta
2.64 GB
bowtie2_index
Directory
HISAT2 genome index
genome-rn6.fasta.gz
831.04 MB
hisat2_index
Directory
genome-rn6.fasta.fai
715 B
genome-rn6.fasta
2.64 GB
BWA genome index
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.gz
769.49 MB
Mus_musculus.GRCm38.dna.primary_assembly.92.fasta.fai
2.09 kB
BWA_index
Directory
WALT genome index
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.fasta.fai
2.12 kB
walt_index
Directory
Mus_musculus.GRCm38.dna.primary_assembly.unmethylated_J02459.fasta.gz
769.50 MB
BWA genome index
BWA_index
Directory
genome-rn6.fasta.fai
715 B
genome-rn6.fasta.gz
831.04 MB
genome-rn6.fasta
2.64 GB
WALT genome index
walt_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.100.fasta.fai
32.18 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.100.fasta.gz
793.91 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.unmethylated_J02459.100.fasta
2.72 GB
File
Mus_musculus.GRCm38.ensembl.100_decoys.txt
539 B
FASTA file
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.gentrome.100.fasta.gz
909.54 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.gentrome.100.fasta.fai
7.87 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.gentrome.100.dict
32.75 MB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.gentrome.100.fasta
3.28 GB
BED file
nextera-flex_trusight_one_targeted_regions_v1.1.bed.gz
976.38 kB
nextera-flex_trusight_one_targeted_regions_v1.1.bed
3.20 MB
nextera-flex_trusight_one_targeted_regions_v1.1.bed.gz.tbi
147.42 kB
BED file
truseq_dna_exome_targeted_regions_v1.2.bed
10.58 MB
truseq_dna_exome_targeted_regions_v1.2.bed.gz
2.65 MB
truseq_dna_exome_targeted_regions_v1.2.bed.gz.tbi
437.49 kB
BED file
nextera-flex_illumina_exome_CEX_targeted_regions_v1.2.bed.gz.tbi
437.49 kB
nextera-flex_illumina_exome_CEX_targeted_regions_v1.2.bed
10.58 MB
nextera-flex_illumina_exome_CEX_targeted_regions_v1.2.bed.gz
2.65 MB
BED file
nextera-flex_truseq_neurodegeneration_targeted_regions_v1.0.bed
15.47 kB
nextera-flex_truseq_neurodegeneration_targeted_regions_v1.0.bed.gz.tbi
6.02 kB
nextera-flex_truseq_neurodegeneration_targeted_regions_v1.0.bed.gz
4.96 kB
BED file
nextera_dna_exome_targeted_regions_v1.2.bed
10.58 MB
nextera_dna_exome_targeted_regions_v1.2.bed.gz.tbi
437.49 kB
nextera_dna_exome_targeted_regions_v1.2.bed.gz
2.65 MB
BED file
ampliseq_illumina_exome.bed
11.91 MB
ampliseq_illumina_exome.bed.gz
3.71 MB
ampliseq_illumina_exome.bed.gz.tbi
379.20 kB
BED file
nextera-flex_trusight_hereditary_cancer_targeted_regions_v2.0.bed.gz.tbi
9.64 kB
nextera-flex_trusight_hereditary_cancer_targeted_regions_v2.0.bed
96.39 kB
nextera-flex_trusight_hereditary_cancer_targeted_regions_v2.0.bed.gz
26.37 kB
BED file
nextera-flex_trusight_cancer_targeted_regions_v1.0.bed.gz.tbi
10.60 kB
nextera-flex_trusight_cancer_targeted_regions_v1.0.bed
91.36 kB
nextera-flex_trusight_cancer_targeted_regions_v1.0.bed.gz
25.25 kB
GTF file
names
Directory
annotation-hg19-ercc.sirv_sorted.gtf
135.57 MB
trackList.json
481 B
annotation-hg19-ercc.sirv.gtf
135.57 MB
annotation-hg19-ercc.sirv_sorted.gtf.idx
1.50 MB
tracks
Directory
seq
Directory
BED file
nextera-flex_trusight_one_expanded_targeted_regions_v2.0.bed.gz.tbi
200.38 kB
nextera-flex_trusight_one_expanded_targeted_regions_v2.0.bed.gz
1.29 MB
nextera-flex_trusight_one_expanded_targeted_regions_v2.0.bed
4.44 MB
Gene expression indices
rsem
Directory
BEDPE file
ampliseq_illumina_exome_hg19.bedpe
20.84 MB
VCF file
dbSNP_common_151_hg19.vcf.gz.tbi
2.14 MB
dbSNP_common_151_hg19.vcf.gz
1.50 GB
Gene expression indices
rsem
Directory
GTF file
names
Directory
annotation-hg19.gtf
129.61 MB
trackList.json
481 B
annotation-hg19_sorted.gtf.idx
1.49 MB
annotation-hg19_sorted.gtf
129.61 MB
tracks
Directory
seq
Directory
Gene expression indices
rsem
Directory
FASTA file
collibri_adapters.fasta.gz
118 B
collibri_adapters.dict
395 B
collibri_adapters.fasta
176 B
collibri_adapters.fasta.fai
86 B
STAR genome index
star_index
Directory
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.gz
905.78 MB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta
2.95 GB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.fai
10.74 kB
STAR genome index
genome-hg19.fasta.gz
894.13 MB
genome-hg19.fasta.fai
783 B
star_index
Directory
genome-hg19.fasta
2.94 GB
GTF file
tracks
Directory
annotation-mm10-ercc.sirv_sorted.gtf
90.62 MB
annotation-mm10-ercc.sirv.gtf
90.62 MB
trackList.json
481 B
annotation-mm10-ercc.sirv_sorted.gtf.idx
1.30 MB
names
Directory
seq
Directory
GTF file
names
Directory
Rattus_norvegicus.Rnor_6.0.92_sorted.gtf
267.16 MB
trackList.json
481 B
Rattus_norvegicus.Rnor_6.0.92.gtf
267.16 MB
Rattus_norvegicus.Rnor_6.0.92_sorted.gtf.idx
1.33 MB
tracks
Directory
seq
Directory
GTF file
tracks
Directory
annotation-rn6_sorted.gtf
50.54 MB
trackList.json
481 B
annotation-rn6.gtf
50.54 MB
annotation-rn6_sorted.gtf.idx
1.28 MB
names
Directory
seq
Directory
STAR genome index
star_index
Directory
genome-mm10.fasta.fai
688 B
genome-mm10.fasta
2.59 GB
genome-mm10.fasta.gz
828.76 MB
GTF file
names
Directory
trackList.json
481 B
Rattus_norvegicus.Rnor_6.0.ercc.sirv_sorted.gtf
267.21 MB
Rattus_norvegicus.Rnor_6.0.ercc.sirv.gtf
267.21 MB
Rattus_norvegicus.Rnor_6.0.ercc.sirv_sorted.gtf.idx
1.34 MB
tracks
Directory
seq
Directory
GTF file
tracks
Directory
annotation-rn6-ercc.sirv_sorted.gtf
50.63 MB
annotation-rn6-ercc.sirv_sorted.gtf.idx
1.29 MB
trackList.json
481 B
annotation-rn6-ercc.sirv.gtf
50.64 MB
names
Directory
seq
Directory
STAR genome index
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.fai
35.26 kB
star_index
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta.gz
793.98 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.ercc.sirv.fasta
2.72 GB
STAR genome index
genome-hg19-ercc.sirv.fasta.gz
894.22 MB
star_index
Directory
genome-hg19-ercc.sirv.fasta.fai
3.88 kB
genome-hg19-ercc.sirv.fasta
2.94 GB
STAR genome index
star_index
Directory
genome-rn6.fasta
2.64 GB
genome-rn6.fasta.fai
715 B
genome-rn6.fasta.gz
831.04 MB
STAR genome index
genome-mm10-ercc.sirv.fasta.fai
3.79 kB
star_index
Directory
genome-mm10-ercc.sirv.fasta
2.59 GB
genome-mm10-ercc.sirv.fasta.gz
828.85 MB
STAR genome index
star_index
Directory
genome-rn6-ercc.sirv.fasta.fai
3.81 kB
genome-rn6-ercc.sirv.fasta.gz
831.13 MB
genome-rn6-ercc.sirv.fasta
2.64 GB
Salmon Index
salmon_index
Directory
STAR genome index
Rattus_norvegicus_rRNA.fasta
11.50 kB
star_index
Directory
Rattus_norvegicus_rRNA.fasta.fai
126 B
Rattus_norvegicus_rRNA.fasta.gz
3.89 kB
Salmon Index
salmon_index
Directory
Salmon Index
salmon_index
Directory
Genome
seq
Directory
Homo_sapiens_USCS_hg38_ercc.dict
32.14 kB
Homo_sapiens_USCS_hg38_ercc.fasta
2.94 GB
Homo_sapiens_USCS_hg38_ercc.fasta.gz
905.21 MB
Homo_sapiens_USCS_hg38_ercc.fasta.fai
10.54 kB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
walt_index
Directory
subread_index
Directory
OBO file
obo_obj
Directory
go.obo.gz
4.40 MB
Genome
genome-rn6-ercc.sirv.fasta.gz
830.63 MB
seq
Directory
genome-rn6-ercc.sirv.fasta.fai
3.81 kB
genome-rn6-ercc.sirv.dict
12.18 kB
genome-rn6-ercc.sirv.fasta
2.64 GB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
Genome
Homo_sapiens_USCS_hg38.fasta.gz
905.19 MB
Homo_sapiens_USCS_hg38.fasta.fai
7.62 kB
Homo_sapiens_USCS_hg38.fasta
2.94 GB
Homo_sapiens_USCS_hg38.dict
21.35 kB
seq
Directory
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
GTF file
tracks
Directory
Homo_sapiens_UCSC_hg38_ercc.gtf
144.46 MB
Homo_sapiens_UCSC_hg38_ercc_sorted.gtf
144.46 MB
trackList.json
481 B
Homo_sapiens_UCSC_hg38_ercc_sorted.gtf.idx
1.52 MB
names
Directory
seq
Directory
GTF file
tracks
Directory
Homo_sapiens_UCSC_hg38_sorted.gtf.idx
1.52 MB
Homo_sapiens_UCSC_hg38_sorted.gtf
144.45 MB
trackList.json
481 B
Homo_sapiens_UCSC_hg38.gtf
144.45 MB
names
Directory
seq
Directory
Genome
Homo_sapiens_USCS_hg38_ercc_sirv.fasta
2.95 GB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.fai
10.74 kB
Homo_sapiens_USCS_hg38_ercc_sirv.fasta.gz
905.28 MB
Homo_sapiens_USCS_hg38_ercc_sirv.dict
34.30 kB
seq
Directory
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
GTF file
tracks
Directory
annotation-mm10-ercc.gtf
90.58 MB
annotation-mm10-ercc_sorted.gtf
90.58 MB
annotation-mm10-ercc_sorted.gtf.idx
1.30 MB
trackList.json
481 B
names
Directory
seq
Directory
Annotation (GTF2.2)
Homo_sapiens.GRCh38.90.gtf
1.04 GB
Genome
bowtie2_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.fasta.gz
840.39 MB
Homo_sapiens.GRCh38.dna.primary_assembly.fasta
2.93 GB
Homo_sapiens.GRCh38.dna.primary_assembly.dict
23.34 kB
bowtie_index
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.fasta.fai
6.26 kB
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
Upload nucleotide sequence(s) (FASTA)
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta.fai
32.15 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta.gz
793.08 MB
Genome
Homo_sapiens.GRCh38.dna.primary_assembly.dict
23.33 kB
seq
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.fasta
2.93 GB
Homo_sapiens.GRCh38.dna.primary_assembly.fasta.fai
6.26 kB
Homo_sapiens.GRCh38.dna.primary_assembly.fasta.gz
840.39 MB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
Genome
genome-mm10.fasta.gz
828.22 MB
genome-mm10.fasta.fai
688 B
genome-mm10.dict
2.01 kB
seq
Directory
genome-mm10.fasta
2.59 GB
bowtie2_index
Directory
bowtie_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
GTF file
tracks
Directory
Rattus_norvegicus.Rnor_6.0.92_sorted.gtf.idx
1.33 MB
trackList.json
414 B
Rattus_norvegicus.Rnor_6.0.92.gtf
267.16 MB
Rattus_norvegicus.Rnor_6.0.92_sorted.gtf
267.16 MB
Genome
seq
Directory
genome-rn6-ercc.fasta.gz
830.57 MB
genome-rn6-ercc.fasta
2.64 GB
genome-rn6-ercc.dict
10.95 kB
genome-rn6-ercc.fasta.fai
3.62 kB
bowtie2_index
Directory
bowtie_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
FASTA file
Rattus_norvegicus_globin_reference.fasta.fai
126 B
Rattus_norvegicus_globin_reference.fasta.gz
3.89 kB
Genome
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta
2.94 GB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.dict
38.01 kB
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.fai
9.37 kB
seq
Directory
Homo_sapiens.GRCh38.dna.primary_assembly.ercc.sirv.fasta.gz
840.49 MB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
Genome
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta
2.59 GB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.gz
768.74 MB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.fasta.fai
5.21 kB
Mus_musculus.GRCm38.dna.primary_assembly.ercc.sirv.dict
21.34 kB
seq
Directory
bowtie2_index
Directory
bowtie_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
Genome
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.fasta.fai
9.83 MB
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.dict
33.73 MB
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.fasta.gz
881.96 MB
Macaca_mulatta.Mmul_8.0.1.dna.toplevel.fasta
3.08 GB
seq
Directory
bowtie2_index
Directory
bowtie_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
STAR genome index
Rattus_norvegicus_globin_reference.fasta
11.50 kB
star_index
Directory
Rattus_norvegicus_globin_reference.fasta.fai
126 B
Rattus_norvegicus_globin_reference.fasta.gz
3.89 kB
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
Genome
seq
Directory
Rattus_norvegicus.Rnor_6.0.dna.toplevel.dict
115.18 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta
2.72 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta.gz
793.08 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta.fai
32.15 kB
bowtie_index
Directory
bowtie2_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
FASTA file
adapters-truseq-bbduk.fasta.fai
894 B
adapters-truseq-bbduk.fasta.gz
269 B
Upload nucleotide sequence(s) (FASTA)
adapters-illumina.fasta.fai
7.26 kB
adapters-illumina.fasta.gz
1.69 kB
FASTA file
Mus_musculus.GRCm38.cdna.all.fasta.fai
4.44 MB
Mus_musculus.GRCm38.cdna.all.fasta.gz
47.54 MB
FASTA file
Homo_sapiens.GRCh38.cdna.all.fasta.gz
63.67 MB
Homo_sapiens.GRCh38.cdna.all.fasta.fai
6.75 MB
FASTA file
adapters-polya-bbduk.fasta.gz
53 B
adapters-polya-bbduk.fasta.fai
37 B
iCount genome
human.27.fa.gz
877.44 MB
human.27.fa.gz.fai
18.66 kB
Genome
genome-hg19-ercc.sirv.dict
12.51 kB
seq
Directory
genome-hg19-ercc.sirv.fasta.fai
3.88 kB
genome-hg19-ercc.sirv.fasta.gz
893.73 MB
genome-hg19-ercc.sirv.fasta
2.94 GB
bowtie2_index
Directory
bowtie_index
Directory
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
walt_index
Directory
Annotation (GTF2.2)
Rattus_norvegicus.Rnor_6.0.92.gtf
267.16 MB
Genome
human.27.fasta
3.06 GB
human.27.fasta.fai
18.66 kB
human.27.fasta.gz
877.44 MB
bowtie2_index
Directory
bowtie_index
Directory
human.27.dict
50.13 kB
BWA_index
Directory
hisat2_index
Directory
subread_index
Directory
Annotation (GTF2.2)
gencode.vM15.annotation.gtf
752.19 MB
iCount annotation
human.27.gtf
1.07 GB